Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

3400952 .. 3403740

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03890.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTCTCAAAGATCTTCATCTCAAGTTTAAGCAAGGCTTGCAGCTGAGGCGAATTCTCAAGATAAATACTGGGTTTAAGAAGAAAGAGGCCAACTTTACCAAAAAACCTTCATGGATGATGCCAGCAGTTTCACATGGGCATCATGTGGTGGAGGGTTATGATGGATCCGACTGTGACTATTTTAGGGTTCAGAGAGAGCAGATTGAAGAGCTTGAGCTTTGGCTTTTTGGAGTTTCGGATCCTCGGATTGGGGACGGAGTTACCAAGTACATGCAGGCACATCTGTTTGATAAGAAACCTAAAGAGTCTTACATAAAGGGAAAGAGCCAAGAGACTATGAAAAAAGCATATCTTAGTGCTAAATCAAAGGTTAGAGATGCCCAGGAAACTGAGGAGGCAAATGGAGTGGGTTCGGTTTCGGCAATGGTGATCGATGGTGAAAAGCTAGTGTTAGCTAATATGGGCAACTACAGAGCAATTGTTTGCAGAGAGGGTTTAGCTCATGAAATAGGCAGCAGGCACAAGCAATCACCCAAAAGGAGTTGGTCTAGTAGATTTTTCAGAGCAAGCAATAAGCAATCTAAAAGCTCAGATCTTGTTGTTGGGGCCGAAAAGATTGAGAATGATACTGAATTTGTCATCTTAGCAAGCAGTGGAATATGGGAGGTGATGAAGTATCAAGAGGCTGTGAATCTCATAAGGAACATCGAGGATCCACAAGCAGCTGCCAAGTATTTGGCAAAGGAAGCTTCAAACAGACTGAGCAGAAGCAACATTTCTTGCTTGATCATTCGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

269

Amino Acids

30.39

Weight (kDa)

9.37

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	83 - 184	1.1e-06	Protein phosphatase 2C
PP2C	PF00481	212 - 267	4.6e-11	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	162, 175, 236, 249, 710, 723
AcsI	RAATTY	2 cut(s)	54, 635
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	209, 756
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	9 cut(s)	46, 214, 220, 448, 458, 503, 591, 728, 752
AluI	AGCT	9 cut(s)	46, 214, 220, 448, 458, 503, 591, 728, 752
Alw26I	GTCTC	2 cut(s)	11, 329
AlwI	GGATC	6 cut(s)	162, 175, 236, 249, 710, 723
AoxI	GGCC	2 cut(s)	90, 609
ApeKI	GCWGC	4 cut(s)	43, 516, 725, 728
ApoI	RAATTY	2 cut(s)	54, 635
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	4 cut(s)	442, 452, 525, 682
BamHI	GGATCC	3 cut(s)	167, 241, 715
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	55, 528, 715, 737
BccI	CCATC	2 cut(s)	158, 431
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	789
BcoDI	GTCTC	2 cut(s)	11, 329
BfaI	CTAG	2 cut(s)	449, 552
BfmI	CTRYAG	1 cut(s)	472
BglII	AGATCT	2 cut(s)	13, 595
BisI	GCNGC	4 cut(s)	44, 517, 726, 729
BlsI	GCNGC	4 cut(s)	45, 518, 727, 730
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	4 cut(s)	169, 243, 610, 717
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	111, 151, 370
BmuI	ACTGGG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	3 cut(s)	8, 44, 236
Bsa29I	ATCGAT	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	245, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	245, 384
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	4 cut(s)	38, 384, 606, 755
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	4 cut(s)	55, 528, 715, 737
BshFI	GGCC	2 cut(s)	92, 611
BshVI	ATCGAT	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	11, 329
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	92, 611
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
BspANI	GGCC	2 cut(s)	92, 611
BspCNI	CTCAG	4 cut(s)	39, 385, 605, 756
BspDI	ATCGAT	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	4 cut(s)	169, 243, 610, 717
BspPI	GGATC	6 cut(s)	162, 175, 236, 249, 710, 723
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	245, 384
BssMI	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstC8I	GCNNGC	6 cut(s)	41, 126, 279, 521, 571, 652
BstDEI	CTNAG	6 cut(s)	47, 356, 393, 592, 646, 764
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	7 cut(s)	16, 170, 244, 435, 598, 718, 792
BstMAI	GTCTC	2 cut(s)	11, 329
BstMBI	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 49, 749
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	55, 528, 715, 737
BstX2I	RGATCY	5 cut(s)	13, 167, 241, 595, 715
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	5 cut(s)	13, 167, 241, 595, 715
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	92, 611
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	6 cut(s)	41, 126, 279, 521, 571, 652
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	271
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	5 cut(s)	114, 137, 146, 274, 506
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	6 cut(s)	47, 356, 393, 592, 646, 764
DpnI	GATC	7 cut(s)	15, 169, 243, 434, 597, 717, 791
DpnII	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	384
FaeI	CATG	5 cut(s)	117, 140, 149, 277, 509
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 339, 371
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	5 cut(s)	113, 136, 145, 273, 505
FbaI	TGATCA	1 cut(s)	789
Fnu4HI	GCNGC	4 cut(s)	44, 517, 726, 729
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	44, 517, 726, 729
FspBI	CTAG	2 cut(s)	449, 552
GluI	GCNGC	4 cut(s)	44, 517, 726, 729
HaeIII	GGCC	2 cut(s)	92, 611
Hin1II	CATG	5 cut(s)	117, 140, 149, 277, 509
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	2 cut(s)	308, 694
HphI	GGTGA	4 cut(s)	442, 452, 525, 682
Hpy188I	TCNGA	6 cut(s)	172, 195, 241, 249, 566, 595
Hpy188III	TCNNGA	3 cut(s)	61, 506, 683
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	43, 277, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 49, 749
HpyF3I	CTNAG	6 cut(s)	47, 356, 393, 592, 646, 764
Hsp92II	CATG	5 cut(s)	117, 140, 149, 277, 509
Ksp22I	TGATCA	1 cut(s)	789
Kzo9I	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
LguI	GCTCTTC	1 cut(s)	204
LpnPI	CCDG	6 cut(s)	57, 138, 263, 371, 398, 505
Lsp1109I	GCAGC	4 cut(s)	55, 528, 715, 737
LweI	GCATC	3 cut(s)	111, 151, 370
MaeI	CTAG	2 cut(s)	449, 552
MaeIII	GTNAC	2 cut(s)	176, 262
MalI	GATC	7 cut(s)	15, 169, 243, 434, 597, 717, 791
MboI	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
MboII	GAAGA	3 cut(s)	8, 94, 221
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	5 cut(s)	13, 167, 241, 595, 715
MluCI	AATT	3 cut(s)	54, 480, 635
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	195
MseI	TTAA	2 cut(s)	30, 78
MspA1I	CMGCKG	2 cut(s)	46, 728
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	40, 49, 749
NdeII	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
NlaIII	CATG	5 cut(s)	117, 140, 149, 277, 509
NlaIV	GGNNCC	4 cut(s)	169, 243, 610, 717
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	694
PkrI	GCNGC	4 cut(s)	45, 518, 727, 730
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	4 cut(s)	169, 243, 610, 717
PspPI	GGNCC	1 cut(s)	609
PsuI	RGATCY	5 cut(s)	13, 167, 241, 595, 715
PvuII	CAGCTG	2 cut(s)	46, 728
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	30, 78
SatI	GCNGC	4 cut(s)	44, 517, 726, 729
Sau3AI	GATC	7 cut(s)	13, 167, 241, 432, 595, 715, 789
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	386
SfaNI	GCATC	3 cut(s)	111, 151, 370
SfcI	CTRYAG	1 cut(s)	472
SmlI	CTYRAG	3 cut(s)	23, 59, 215
SmoI	CTYRAG	3 cut(s)	23, 59, 215
Sse9I	AATT	3 cut(s)	54, 480, 635
SspMI	CTAG	2 cut(s)	449, 552
StyD4I	CCNGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	435, 711, 796
TasI	AATT	3 cut(s)	54, 480, 635
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	694
Tru1I	TTAA	2 cut(s)	30, 78
Tru9I	TTAA	2 cut(s)	30, 78
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	4 cut(s)	43, 516, 725, 728
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	5 cut(s)	8, 102, 356, 522, 689
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	661
XapI	RAATTY	2 cut(s)	54, 635
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	2 cut(s)	449, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.