Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Forward (+)

20448615 .. 20450930

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1215600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGCGTTAAAGATTTTCATATCAAGCAAAGGCTGAAACGCTTCCTCATGAGAAGTGGAGAGGGGAGGAAGAAGAAAGAAGCCACCATGGCAAAGAAACCGTCGTGGATGATGCCTGCAGTCTCACATGGATATCACACCATTGAGAGCAACACATCACCGGCTACTTATGGTGATTCCGATTCGGACTTTGTTGTGGCTCAAAGAGAGCAAATTGAAGAGCTTGAGCTGTGGTTTTTTGGAGTTTTTGATGCCGGGGTTGGCGACGGAGTTACCAAGTACATGCAGTCACATTTGTTTGATAAGAAGCCTAAAGAGTCTCATATAAGGGGAAAGAGCAAGGAGACAATGAGAAAAGCCTATCTTGGTGCTAGATCGAAGGTTAGAGAGGCCTCGGAGGAGACGAAAGGAGTCGGTTCAGTTTCTGCACTGGTGATCGACGGGGAAAAGCTTGTATTAGCTAACATGGGAGACTATAGAGCAGTTGTGTGTAAAGATGGTTTGGCTCGTCAGATAGGCAGCAGGAACAAGCAATCAACCAAAAAAAGTTGGTCACACAGGTTCTTTAGAGGTAATGCAGCAAACACCAAGAGTTCCAAAAGCACAGACCTTGTTGTTGGGGTTGAAAGGGTTGATCCCGACACTGAATTTGTCATTTTGGCAAGCACTGGCATATGGGAGGTAATGAAGAATCAAGAGGCTGTGAATCTCATCCGGCACATCGAAAATCCACAGAAGGCTTCCGAGTGTTTGGCGGAAGAAGCGTCAAATAGGATGAGCAGGGGCTGCATTTCTTGCTTGGTCATCAGATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

273

Amino Acids

30.47

Weight (kDa)

9.39

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	78 - 170	3.8e-08	Protein phosphatase 2C
PP2C	PF00481	211 - 261	5.9e-10	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	755
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	1 cut(s)	647
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	218, 626
AluBI	AGCT	4 cut(s)	223, 229, 451, 461
AluI	AGCT	4 cut(s)	223, 229, 451, 461
Alw26I	GTCTC	5 cut(s)	127, 324, 338, 395, 465
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	2 cut(s)	425, 786
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	519, 578, 786
ApoI	RAATTY	1 cut(s)	647
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 632, 664
Asp700I	GAANNNNTTC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	150, 185, 445
BbvI	GCAGC	3 cut(s)	531, 590, 773
BccI	CCATC	1 cut(s)	491
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	5 cut(s)	127, 324, 338, 395, 465
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	2 cut(s)	117, 475
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	3 cut(s)	520, 579, 787
BlsI	GCNGC	3 cut(s)	521, 580, 788
Bme1390I	CCNGG	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	102, 241
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	87, 255, 393
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	435, 673
BseDI	CCNNGG	3 cut(s)	87, 255, 393
BseGI	GGATG	3 cut(s)	114, 711, 780
BseNI	ACTGG	2 cut(s)	435, 673
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	531, 590, 773
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	161, 255, 715
BsmAI	GTCTC	5 cut(s)	127, 324, 338, 395, 465
BsmBI	CGTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	374, 435, 634
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	755
BspANI	GGCC	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	435, 673
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	3 cut(s)	87, 255, 393
BssMI	GATC	3 cut(s)	374, 435, 634
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	2 cut(s)	786, 795
BstC8I	GCNNGC	2 cut(s)	117, 664
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	114, 711, 780
BstKTI	GATC	3 cut(s)	377, 438, 637
BstMAI	GTCTC	5 cut(s)	127, 324, 338, 395, 465
BstMBI	GATC	3 cut(s)	374, 435, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 761, 786, 795
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	2 cut(s)	117, 475
BstV1I	GCAGC	3 cut(s)	531, 590, 773
BsuRI	GGCC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	114, 711, 780
BtsIMutI	CAGTG	3 cut(s)	428, 642, 666
Cac8I	GCNNGC	2 cut(s)	117, 664
CaiI	CAGNNNCTG	2 cut(s)	425, 786
CciI	TCATGA	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	160
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	5 cut(s)	49, 88, 128, 283, 466
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	3 cut(s)	376, 437, 636
DpnII	GATC	3 cut(s)	374, 435, 634
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	5 cut(s)	52, 91, 131, 286, 469
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	5 cut(s)	48, 87, 127, 282, 465
FauNDI	CATATG	1 cut(s)	674
Fnu4HI	GCNGC	3 cut(s)	520, 579, 787
FokI	GGATG	3 cut(s)	121, 698, 787
Fsp4HI	GCNGC	3 cut(s)	520, 579, 787
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	3 cut(s)	520, 579, 787
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	3 cut(s)	161, 255, 715
HgaI	GACGC	1 cut(s)	753
Hin1II	CATG	5 cut(s)	52, 91, 131, 286, 469
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	6 cut(s)	176, 182, 317, 411, 691, 706
HpaII	CCGG	3 cut(s)	161, 255, 715
HphI	GGTGA	3 cut(s)	150, 185, 445
Hpy188I	TCNGA	6 cut(s)	181, 187, 397, 513, 745, 809
Hpy188III	TCNNGA	3 cut(s)	49, 638, 695
Hpy99I	CGWCG	3 cut(s)	106, 269, 443
HpyAV	CCTTC	2 cut(s)	373, 730
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	119, 286, 428, 578, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 761, 786, 795
Hsp92II	CATG	5 cut(s)	52, 91, 131, 286, 469
Kzo9I	GATC	3 cut(s)	374, 435, 634
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	129, 174, 268, 416, 508, 544, 654, 728, 766
Lsp1109I	GCAGC	3 cut(s)	531, 590, 773
LweI	GCATC	2 cut(s)	102, 241
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	271, 288, 552
MalI	GATC	3 cut(s)	376, 437, 636
MboI	GATC	3 cut(s)	374, 435, 634
MboII	GAAGA	5 cut(s)	82, 85, 230, 700, 770
MluCI	AATT	2 cut(s)	213, 647
MlyI	GAGTC	2 cut(s)	326, 420
MnlI	CCTC	9 cut(s)	55, 56, 60, 382, 391, 403, 563, 673, 691
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	9, 817
MspI	CCGG	3 cut(s)	161, 255, 715
MspR9I	CCNGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	89, 761, 786, 795
NciI	CCSGG	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	3 cut(s)	374, 435, 634
NlaIII	CATG	5 cut(s)	52, 91, 131, 286, 469
NmuCI	GTSAC	2 cut(s)	288, 552
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	176, 182, 691, 706
PkrI	GCNGC	3 cut(s)	521, 580, 788
PleI	GAGTC	2 cut(s)	325, 419
PpsI	GAGTC	2 cut(s)	325, 419
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	2 cut(s)	425, 786
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	9, 817
SatI	GCNGC	3 cut(s)	520, 579, 787
Sau3AI	GATC	3 cut(s)	374, 435, 634
SchI	GAGTC	2 cut(s)	326, 420
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	9 cut(s)	225, 231, 384, 453, 463, 563, 574, 612, 684
SfaNI	GCATC	2 cut(s)	102, 241
SfcI	CTRYAG	2 cut(s)	117, 475
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	213, 647
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	755
SspMI	CTAG	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	377, 438, 723
TasI	AATT	2 cut(s)	213, 647
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	176, 182, 691, 706
Tru1I	TTAA	2 cut(s)	9, 817
Tru9I	TTAA	2 cut(s)	9, 817
TscAI	CASTG	3 cut(s)	435, 649, 673
TseFI	GTSAC	2 cut(s)	288, 552
TseI	GCWGC	3 cut(s)	519, 578, 786
Tsp45I	GTSAC	2 cut(s)	288, 552
TspDTI	ATGAA	2 cut(s)	8, 701
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	3 cut(s)	435, 649, 673
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.