Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

8342177 .. 8348273

Gene Structure 6097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCAATTGGAGGTCAAGATGATAGTAAGAAGACAAGCTGTGTTTACTGAAGGAAGTAGTGGTTGTGGTAGACTGATGCTTCCGCAGGGGCTGCGAATAAATTCACTGGTTTTGTTAACGCATGTTGGCATGGGACATATGCAGACTCGCCACCCAACTTTGCCAAATAATCATAACATTTCAGGCAAATTCATGGGTCTCAAAGATTTTCATCTCAAGTTTAAGCAAGGCTTTCAGCTGAGGCGAATTCTCAAGATAAAAACTGGGGTTAAGAAGAAAGAGGCTAATTTTACTACAAAACCTTCATGGATGATGCCAGCAGTCTCACATGGGCATCATGTGGTTGAGGGTTATGATGAATTCGACTGTGACTATGTTGTGGCTCAGAGAGAGCAGATTGAAGAGCTTGAGGTGTGGCTTTTCGGAGTTTCCGATCCTCGGATTGGGGGCGGAATTACCAAGTACATGCAGGCACATCTGTTTGATAAGAAGCCAAAAGAGTCTATCATAAAGGGAAAGAGCAACGAGACGATGAGAAAAGCATATCTTGATGCTAAAGCAAAGCTTAGAGATGCCCAGGGAACAGAGGAGACAACTGGAGTCGGTTCAGTTTCGGCAATGGTGATCAATGGTGAAAAGCTAGTATTAGCGAATATGGGAGACTACAGAGCAATTGTTTGCAGAGAGGGTTTGGCTCATGAAATAGGCATTAGGCAGAAGCAATCACCCAAAATGAGTTGGACACATAGACTCTTTAAAGCAAACAATAAGCAATCTAAAAGCTCAGATCTTGTTGTTGGGGCCGAAAAGATTGAGAACGATAGTGAATTTGTCATTTTAGCAAGCAGTGGCATATGGGAGGTGATGAAGTATCAAGAGGCTGTGAATCTCATAAGGCGCATTGAAAATCCAGAAATAGCTGCCGAGTGTTTGGCAAGTGAAGCTTCAAATAGAATGAGCAGAAGCAACATTTCTTGCTTGGTCATTCGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

332

Amino Acids

37.39

Weight (kDa)

9.37

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	140 - 233	9.6e-06	Protein phosphatase 2C
PP2C	PF00481	269 - 324	4.1e-10	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	2 cut(s)	83, 450
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	5 cut(s)	100, 188, 246, 359, 827
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	438, 443
AgsI	TTSAA	3 cut(s)	401, 905, 948
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	8 cut(s)	38, 238, 406, 565, 640, 783, 920, 944
AluI	AGCT	8 cut(s)	38, 238, 406, 565, 640, 783, 920, 944
Alw26I	GTCTC	5 cut(s)	203, 328, 521, 584, 654
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	2 cut(s)	91, 920
ApoI	RAATTY	5 cut(s)	100, 188, 246, 359, 827
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	1 cut(s)	801
AsuHPI	GGTGA	4 cut(s)	634, 644, 717, 874
BbsI	GAAGAC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	78, 907
BciT130I	CCWGG	1 cut(s)	578
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	5 cut(s)	203, 328, 521, 584, 654
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	664
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	2 cut(s)	92, 921
BlsI	GCNGC	2 cut(s)	93, 922
Bme1390I	CCNGG	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	801
BmiI	GGNNCC	1 cut(s)	802
BmrFI	CCNGG	1 cut(s)	578
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	5 cut(s)	66, 303, 343, 541, 562
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	3 cut(s)	200, 236, 428
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	437, 576, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 443
Bse1I	ACTGG	3 cut(s)	111, 268, 601
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	437, 576, 577
BseGI	GGATG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	438, 443
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	3 cut(s)	230, 398, 798
BseNI	ACTGG	3 cut(s)	111, 268, 601
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	78, 907
BshFI	GGCC	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	438, 443
BsmAI	GTCTC	5 cut(s)	203, 328, 521, 584, 654
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	803
Bso31I	GGTCTC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	433, 624, 787
BspACI	CCGC	2 cut(s)	83, 450
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	3 cut(s)	231, 397, 797
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	802
BspPI	GGATC	1 cut(s)	428
BspQI	GCTCTTC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	111, 268, 601
BssECI	CCNNGG	3 cut(s)	437, 576, 577
BssMI	GATC	3 cut(s)	433, 624, 787
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	318, 471, 844
BstDEI	CTNAG	4 cut(s)	239, 384, 566, 784
BstF5I	GGATG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	3 cut(s)	436, 627, 790
BstMAI	GTCTC	5 cut(s)	203, 328, 521, 584, 654
BstMBI	GATC	3 cut(s)	433, 624, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 941
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	125, 469
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	664
BstV1I	GCAGC	2 cut(s)	78, 907
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	1 cut(s)	803
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	853
BtsIMutI	CAGTG	2 cut(s)	104, 853
Cac8I	GCNNGC	3 cut(s)	318, 471, 844
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	1 cut(s)	801
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	8 cut(s)	122, 130, 193, 306, 329, 338, 466, 698
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	4 cut(s)	239, 384, 566, 784
DpnI	GATC	3 cut(s)	435, 626, 789
DpnII	GATC	3 cut(s)	433, 624, 787
DraI	TTTAAA	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	69
EcoRI	GAATTC	2 cut(s)	246, 359
EcoRII	CCWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	8 cut(s)	125, 133, 196, 309, 332, 341, 469, 701
FalI	AAGNNNNNCTT	8 cut(s)	215, 247, 531, 563, 549, 581, 928, 960
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	8 cut(s)	121, 129, 192, 305, 328, 337, 465, 697
FauNDI	CATATG	2 cut(s)	138, 854
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	92, 921
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	92, 921
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	2 cut(s)	92, 921
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	8 cut(s)	125, 133, 196, 309, 332, 341, 469, 701
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	2 cut(s)	563, 942
HinfI	GANTC	5 cut(s)	145, 500, 600, 750, 886
HpaI	GTTAAC	1 cut(s)	117
HphI	GGTGA	4 cut(s)	634, 644, 717, 874
Hpy166II	GTNNAC	3 cut(s)	45, 71, 117
Hpy188I	TCNGA	5 cut(s)	387, 425, 433, 441, 787
Hpy188III	TCNNGA	6 cut(s)	16, 253, 548, 698, 875, 911
Hpy8I	GTNNAC	3 cut(s)	45, 71, 117
HpyAV	CCTTC	2 cut(s)	44, 312
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	4, 142, 469, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 941
HpyF3I	CTNAG	4 cut(s)	239, 384, 566, 784
Hsp92II	CATG	8 cut(s)	125, 133, 196, 309, 332, 341, 469, 701
HspAI	GCGC	1 cut(s)	898
Ksp22I	TGATCA	1 cut(s)	624
KspAI	GTTAAC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	433, 624, 787
LguI	GCTCTTC	1 cut(s)	396
Lsp1109I	GCAGC	2 cut(s)	78, 907
LweI	GCATC	5 cut(s)	66, 303, 343, 541, 562
MaeI	CTAG	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	3 cut(s)	435, 626, 789
MboI	GATC	3 cut(s)	433, 624, 787
MboII	GAAGA	3 cut(s)	42, 286, 413
MfeI	CAATTG	2 cut(s)	5, 672
MflI	RGATCY	1 cut(s)	787
MluCI	AATT	9 cut(s)	5, 100, 188, 246, 286, 359, 453, 672, 827
MlyI	GAGTC	4 cut(s)	139, 509, 609, 744
MmeI	TCCRAC	1 cut(s)	719
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	4 cut(s)	116, 222, 270, 756
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	578
MunI	CAATTG	2 cut(s)	5, 672
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	91, 941
NdeI	CATATG	2 cut(s)	138, 854
NdeII	GATC	3 cut(s)	433, 624, 787
NlaIII	CATG	8 cut(s)	125, 133, 196, 309, 332, 341, 469, 701
NlaIV	GGNNCC	1 cut(s)	802
NmeAIII	GCCGAG	1 cut(s)	949
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	2 cut(s)	125, 469
PagI	TCATGA	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	886
PkrI	GCNGC	2 cut(s)	93, 922
PleI	GAGTC	4 cut(s)	139, 508, 608, 744
PpsI	GAGTC	4 cut(s)	139, 508, 608, 744
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	801
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	116, 222, 270, 756
SatI	GCNGC	2 cut(s)	92, 921
Sau3AI	GATC	3 cut(s)	433, 624, 787
Sau96I	GGNCC	1 cut(s)	801
SchI	GAGTC	4 cut(s)	139, 509, 609, 744
ScrFI	CCNGG	1 cut(s)	578
SfaNI	GCATC	5 cut(s)	66, 303, 343, 541, 562
SfcI	CTRYAG	1 cut(s)	664
SmlI	CTYRAG	3 cut(s)	215, 251, 407
SmoI	CTYRAG	3 cut(s)	215, 251, 407
Sse9I	AATT	9 cut(s)	5, 100, 188, 246, 286, 359, 453, 672, 827
SsiI	CCGC	2 cut(s)	83, 450
SspMI	CTAG	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	363, 988
TasI	AATT	9 cut(s)	5, 100, 188, 246, 286, 359, 453, 672, 827
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	4 cut(s)	116, 222, 270, 756
Tru9I	TTAA	4 cut(s)	116, 222, 270, 756
TscAI	CASTG	2 cut(s)	111, 853
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	91, 920
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	6 cut(s)	181, 200, 294, 372, 714, 881
TspRI	CASTG	2 cut(s)	111, 853
XapI	RAATTY	5 cut(s)	100, 188, 246, 359, 827
XceI	RCATGY	2 cut(s)	125, 469
XmiI	GTMKAC	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.