Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

7297206 .. 7299506

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTCTCAAAGATTTTCATCTCAAGTTTAAGCAAGGCTTTCAGCTGAGGCGAATTCTCAAGATAAAAACTGGGGTTAAGAAGAAAGATGCTAAATTTACTACAAAACCTTCATGGATGATGCCAGCAGTCTCACATGGGCATCATGTGGTTGAGGGTTATGATGAATTCGACTGTGACTATGTTGTGGCTCAGAGAGAGCAGATTGAAGAGCTTGAGGTGTGGCTTTTCGGAGTTTCCGATCCTCGGATTGGGGACGGAATTACCAAGTACATGCAGGCACATCTGTTTGATAAGAAGCCAAAAGAGTCTTACATAAAGGGAAAGAGCAACGAGACGATGAGAAAAGCATATCTTGATGCTAAAGCAAAGGTTAGAGACGCCCAGGGAACAGAGGAGACAAATGGAGTCGGTTCAGTTTCGGCAATGGTGATCAATGGTGAAAAGCTAGTATTAGCGAATATGGGAGACTACAGAGCAATTGTTTGCAGAGAGGGTTTGGCTCATGAAATAGGCATTAGGCACAAGCAATCACCCAAAATGAGTTGGACACATAGACTCTTTAAAGCAAACAATAAGCAATCTAAAAGCTCAGATCTTCTTGTTGGGGCCGAAAAGATTGAGAACGATATTGAATTTGTCATTTTAGCAAGCAGTGGCATATGGGAGGTGATGAAGTATCAAGAGGCTGTGAATCTCATAAGGCGCGTTGAAAATCCAGAAATAGCTGCCGAGTGTTTGGCAAGTGAAGCTTCAAATAGAATGAGCAGAAGCAACATTTCTTGCTTGGTCATTCGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

268

Amino Acids

30.41

Weight (kDa)

8.99

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	74 - 176	3.1e-07	Protein phosphatase 2C
PP2C	PF00481	206 - 260	1.1e-09	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	708
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	4 cut(s)	54, 95, 167, 635
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	246, 251
AgsI	TTSAA	4 cut(s)	209, 635, 713, 756
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	6 cut(s)	46, 214, 448, 591, 728, 752
AluI	AGCT	6 cut(s)	46, 214, 448, 591, 728, 752
Alw26I	GTCTC	6 cut(s)	11, 136, 329, 372, 392, 462
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	4 cut(s)	54, 95, 167, 635
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	4 cut(s)	442, 452, 525, 682
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	715
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	432
BcoDI	GTCTC	6 cut(s)	11, 136, 329, 372, 392, 462
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	472
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	4 cut(s)	79, 111, 151, 349
BmuI	ACTGGG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	3 cut(s)	8, 44, 236
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	245, 384, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 251
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	245, 384, 385
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	246, 251
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	38, 206, 606
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	715
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	246, 251
BsmAI	GTCTC	6 cut(s)	11, 136, 329, 372, 392, 462
BsmBI	CGTCTC	2 cut(s)	329, 372
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	611
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	241, 432, 595
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	3 cut(s)	39, 205, 605
BspFNI	CGCG	1 cut(s)	708
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	245, 384, 385
BssMI	GATC	3 cut(s)	241, 432, 595
BssNI	GRCGYC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	126, 279, 652
BstDEI	CTNAG	3 cut(s)	47, 192, 592
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	3 cut(s)	244, 435, 598
BstMAI	GTCTC	6 cut(s)	11, 136, 329, 372, 392, 462
BstMBI	GATC	3 cut(s)	241, 432, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	126, 279, 652
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	1 cut(s)	609
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	5 cut(s)	114, 137, 146, 274, 506
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	47, 192, 592
DpnI	GATC	3 cut(s)	243, 434, 597
DpnII	GATC	3 cut(s)	241, 432, 595
DraI	TTTAAA	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	11
EcoRI	GAATTC	2 cut(s)	54, 167
EcoRII	CCWGG	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	329, 372
FaeI	CATG	5 cut(s)	117, 140, 149, 277, 509
FalI	AAGNNNNNCTT	6 cut(s)	23, 55, 339, 371, 736, 768
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	5 cut(s)	113, 136, 145, 273, 505
FauNDI	CATATG	1 cut(s)	662
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	611
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	708
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	117, 140, 149, 277, 509
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	4 cut(s)	308, 408, 558, 694
HphI	GGTGA	4 cut(s)	442, 452, 525, 682
Hpy188I	TCNGA	5 cut(s)	195, 233, 241, 249, 595
Hpy188III	TCNNGA	5 cut(s)	61, 356, 506, 683, 719
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	277, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	3 cut(s)	47, 192, 592
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	5 cut(s)	117, 140, 149, 277, 509
HspAI	GCGC	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	241, 432, 595
LguI	GCTCTTC	1 cut(s)	204
LpnPI	CCDG	6 cut(s)	57, 138, 263, 371, 398, 732
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	4 cut(s)	79, 111, 151, 349
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	243, 434, 597
MboI	GATC	3 cut(s)	241, 432, 595
MboII	GAAGA	3 cut(s)	94, 221, 590
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	6 cut(s)	54, 95, 167, 261, 480, 635
MlyI	GAGTC	3 cut(s)	317, 417, 552
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	8 cut(s)	42, 148, 211, 255, 388, 487, 661, 679
MseI	TTAA	3 cut(s)	30, 78, 564
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	1 cut(s)	749
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	3 cut(s)	241, 432, 595
NlaIII	CATG	5 cut(s)	117, 140, 149, 277, 509
NlaIV	GGNNCC	1 cut(s)	610
NmeAIII	GCCGAG	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	505
PasI	CCCWGGG	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	694
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	3 cut(s)	316, 416, 552
PpsI	GAGTC	3 cut(s)	316, 416, 552
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	30, 78, 564
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	3 cut(s)	241, 432, 595
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	3 cut(s)	317, 417, 552
ScrFI	CCNGG	1 cut(s)	386
SfaNI	GCATC	4 cut(s)	79, 111, 151, 349
SfcI	CTRYAG	1 cut(s)	472
SmlI	CTYRAG	3 cut(s)	23, 59, 215
SmoI	CTYRAG	3 cut(s)	23, 59, 215
Sse9I	AATT	6 cut(s)	54, 95, 167, 261, 480, 635
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	171, 796
TasI	AATT	6 cut(s)	54, 95, 167, 261, 480, 635
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	694
Tru1I	TTAA	3 cut(s)	30, 78, 564
Tru9I	TTAA	3 cut(s)	30, 78, 564
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	5 cut(s)	8, 102, 180, 522, 689
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	661
XapI	RAATTY	4 cut(s)	54, 95, 167, 635
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.