Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

9497015 .. 9499321

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36645

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGATAATCATAACATTTCAGGCAAATTCATGGGTCTCAAAGATTTTCATCTCAAGTTTAAGCAAGGCTTTCAGCTGAGGCGAATTCTCAAGATAAAAACTGGGGTTAAGAAGAAAGAGGCTAATTTTACTACAAAACCTTCATGGATGATGCCAGCAGTCTCACATGGGCATCATGTGGTTGAGGGTTATGATGAATTCGACTGTGACTATGTTGTGGCTCAGAGAGAGCAGATTGAAGAGCTTGAGGTGTGGCTTTTCGGAGTTTCCGATCCTCGGATTGGGGGCGGAATTACCAAGTACATGCAGGCACATCTGTTTGATAAGAAGCCAAAAGAGTCTATCATAAAGGGAAAGAGCAACGAGACGATGAGAAAAGCATATCTTGATGCTAAAGCAAAGCTTAGAGATGCCCAGGGAACAGAGGAGACAACTGGAGTCGGTTCAGTTTCGGCAATGGTGATCAATGGTGAAAAGCTAGTATTAGCGAATATGGGAGACTACAGAGCAATTGTTTGCAGAGAGGGTTTGGCTCATGAAATAGGCATTAGGCAGAAGCAATCACCCAAAATGAGTTGGACACATAGACTCTTTAAAGCAAACAATAAGCAATCTAAAAGCTCAGATCTTGTTGTTGGGGCCGAAAAGATTGAGAACGATAGTGAATTTGTCATTTTAGCAAGCAGTGGCATATGGGAGGTGATGAAGTATCAAGAGGCTGTGAATCTCATAAGGCGCATTGAAAATCCAGAAATAGCTGCCGAGTGTTTGGCAAGTGAAGCTTCAAATAGAATGAGCAGAAGCAACATTTCTTGCTTGGTCATTCGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

279

Amino Acids

31.49

Weight (kDa)

9.0

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	87 - 180	6.3e-06	Protein phosphatase 2C
PP2C	PF00481	216 - 271	3.1e-10	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	4 cut(s)	29, 87, 200, 668
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	279, 284
AgsI	TTSAA	3 cut(s)	242, 746, 789
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	7 cut(s)	79, 247, 406, 481, 624, 761, 785
AluI	AGCT	7 cut(s)	79, 247, 406, 481, 624, 761, 785
Alw26I	GTCTC	5 cut(s)	44, 169, 362, 425, 495
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	4 cut(s)	29, 87, 200, 668
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	4 cut(s)	475, 485, 558, 715
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	748
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	5 cut(s)	44, 169, 362, 425, 495
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
Bme1390I	CCNGG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	144, 184, 382, 403
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	3 cut(s)	41, 77, 269
BsaBI	GATNNNNATC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	278, 417, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 284
Bse1I	ACTGG	2 cut(s)	109, 442
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	3 cut(s)	278, 417, 418
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	279, 284
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	71, 239, 639
BseNI	ACTGG	2 cut(s)	109, 442
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	748
BshFI	GGCC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	279, 284
BsmAI	GTCTC	5 cut(s)	44, 169, 362, 425, 495
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	644
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	274, 465, 628
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	3 cut(s)	72, 238, 638
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	109, 442
BssECI	CCNNGG	3 cut(s)	278, 417, 418
BssMI	GATC	3 cut(s)	274, 465, 628
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	159, 312, 685
BstDEI	CTNAG	4 cut(s)	80, 225, 407, 625
BstF5I	GGATG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	3 cut(s)	277, 468, 631
BstMAI	GTCTC	5 cut(s)	44, 169, 362, 425, 495
BstMBI	GATC	3 cut(s)	274, 465, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	159, 312, 685
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	6 cut(s)	34, 147, 170, 179, 307, 539
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	80, 225, 407, 625
DpnI	GATC	3 cut(s)	276, 467, 630
DpnII	GATC	3 cut(s)	274, 465, 628
DraI	TTTAAA	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	44
EcoRI	GAATTC	2 cut(s)	87, 200
EcoRII	CCWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	6 cut(s)	37, 150, 173, 182, 310, 542
FalI	AAGNNNNNCTT	8 cut(s)	56, 88, 372, 404, 390, 422, 769, 801
FatI	CATG	6 cut(s)	33, 146, 169, 178, 306, 538
FauNDI	CATATG	1 cut(s)	695
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	1 cut(s)	762
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	644
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	6 cut(s)	37, 150, 173, 182, 310, 542
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HindIII	AAGCTT	2 cut(s)	404, 783
HinfI	GANTC	4 cut(s)	341, 441, 591, 727
HphI	GGTGA	4 cut(s)	475, 485, 558, 715
Hpy188I	TCNGA	5 cut(s)	228, 266, 274, 282, 628
Hpy188III	TCNNGA	5 cut(s)	94, 389, 539, 716, 752
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	310, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	4 cut(s)	80, 225, 407, 625
Hsp92II	CATG	6 cut(s)	37, 150, 173, 182, 310, 542
HspAI	GCGC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	274, 465, 628
LguI	GCTCTTC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	9, 90, 171, 296, 404, 423, 431, 765
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	4 cut(s)	144, 184, 382, 403
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	276, 467, 630
MboI	GATC	3 cut(s)	274, 465, 628
MboII	GAAGA	2 cut(s)	127, 254
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	628
MluCI	AATT	7 cut(s)	29, 87, 127, 200, 294, 513, 668
MlyI	GAGTC	3 cut(s)	350, 450, 585
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	9 cut(s)	75, 115, 181, 244, 288, 421, 520, 694, 712
MseI	TTAA	3 cut(s)	63, 111, 597
MspA1I	CMGCKG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	782
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	3 cut(s)	274, 465, 628
NlaIII	CATG	6 cut(s)	37, 150, 173, 182, 310, 542
NlaIV	GGNNCC	1 cut(s)	643
NmeAIII	GCCGAG	1 cut(s)	790
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	538
PasI	CCCWGGG	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	727
PkrI	GCNGC	1 cut(s)	763
PleI	GAGTC	3 cut(s)	349, 449, 585
PpsI	GAGTC	3 cut(s)	349, 449, 585
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	642
PsuI	RGATCY	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	63, 111, 597
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	3 cut(s)	274, 465, 628
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	3 cut(s)	350, 450, 585
ScrFI	CCNGG	1 cut(s)	419
SfaNI	GCATC	4 cut(s)	144, 184, 382, 403
SfcI	CTRYAG	1 cut(s)	505
SmlI	CTYRAG	3 cut(s)	56, 92, 248
SmoI	CTYRAG	3 cut(s)	56, 92, 248
Sse9I	AATT	7 cut(s)	29, 87, 127, 200, 294, 513, 668
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	204, 829
TasI	AATT	7 cut(s)	29, 87, 127, 200, 294, 513, 668
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	3 cut(s)	63, 111, 597
Tru9I	TTAA	3 cut(s)	63, 111, 597
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	6 cut(s)	22, 41, 135, 213, 555, 722
TspRI	CASTG	1 cut(s)	694
XapI	RAATTY	4 cut(s)	29, 87, 200, 668
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.