Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8376444 .. 8378364

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGACTTCTTCTACTTTCTCGTCACTACTACCTTCACCACCAGCTCTTCTTTCCGACCACCGTTCTCCTCCACCATCCATCAGATACTCCTTTTCTCCCTTAACTACTCCAAAATCGTCTCGTTTGGGTTTCACTGTACCGGAGAAGAGAAACCTCGCTGCTAATTCGTCTCTCGTTGAAGTATCCATTGGCGGAGAAAGTGACCCACCACCATCATCATCTGGATCAGGAGGAGACGACAAGCAAATTGCATTACTCAAACTCAAATTACTTAGTGTAGTTTCGGGATTAAACAGAGGACTTGTGGCGAGTGTTGATGATTTAGAAAGAGCTGAAGTGGCTGCTAAAGAACTTGAAACTGCTGGGGGACCGGTTGATTTAACCGATGATCTTGATAAGCTTCAAGGGAAATGGAGGCTGTTGTATAGTAGTGCGTTCTCTTCTCGGTCTTTAGGTGGTAGCCGTCCTGGTCTACCTACTGGACGTTTGATCCCTGTTACTCTTGGCCAGGTGTTTCAACGGATTGATGTGTTTAGCAAAGATTTTGATAACATAGCAGAGGTGGAATTAGGAGCCCCTTGGCCATTTCCGCCATTAGAAGCCACTGCGACATTGGCACACAAGTTTGAACTCTTAGGCACTTGCAAGATCAAGATAACATTTGAGAAAACAACTGTGAAGACATCGGGAAACTTGTCGCAGATTCCTCCGTTTGATATCCCGAGGCTTCCCGACAGTTTCAGACCATCGTCAAACCCTGGAACTGGGGATTTCGAAGTTACCTATGTTGATGATACCATGCGCATAACTCGCGGGGACAGAGGTGAACTTAGGGTATTCGTCATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

284

Amino Acids

30.45

Weight (kDa)

5.82

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	87 - 281	6.2e-54	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	475
AccII	CGCG	1 cut(s)	816
AciI	CCGC	3 cut(s)	195, 593, 816
AclWI	GGATC	2 cut(s)	235, 487
AcoI	YGGCCR	2 cut(s)	508, 584
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	767
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	182, 359, 407, 521, 632
AjnI	CCWGG	3 cut(s)	469, 510, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	3 cut(s)	47, 335, 403
AluI	AGCT	3 cut(s)	47, 335, 403
Alw26I	GTCTC	3 cut(s)	126, 177, 231
AlwI	GGATC	2 cut(s)	235, 487
Ama87I	CYCGRG	1 cut(s)	724
AoxI	GGCC	2 cut(s)	508, 584
ApeKI	GCWGC	2 cut(s)	161, 344
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	30, 839
AsuII	TTCGAA	1 cut(s)	777
AvaI	CYCGRG	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	371
BalI	TGGCCA	2 cut(s)	510, 586
BanII	GRGCYC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	689
BbvI	GCAGC	2 cut(s)	148, 331
BccI	CCATC	4 cut(s)	85, 89, 223, 757
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	3 cut(s)	471, 512, 762
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	126, 177, 231
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	162, 345
BlsI	GCNGC	2 cut(s)	163, 346
Bme1390I	CCNGG	3 cut(s)	471, 512, 762
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	372, 577
BmrFI	CCNGG	3 cut(s)	471, 512, 762
BmrI	ACTGGG	1 cut(s)	777
BmuI	ACTGGG	1 cut(s)	777
BoxI	GACNNNNGTC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	581, 725, 760
BsaWI	WCCGGW	2 cut(s)	142, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	487, 772
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	3 cut(s)	471, 512, 762
BseDI	CCNNGG	3 cut(s)	581, 725, 760
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseMI	GCAATG	1 cut(s)	846
BseNI	ACTGG	2 cut(s)	487, 772
BseRI	GAGGAG	2 cut(s)	60, 249
BseXI	GCAGC	2 cut(s)	148, 331
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	2 cut(s)	510, 586
BshTI	ACCGGT	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	143, 374
BslFI	GGGAC	2 cut(s)	384, 833
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	3 cut(s)	126, 177, 231
BsmBI	CGTCTC	3 cut(s)	126, 177, 231
BsmFI	GGGAC	2 cut(s)	384, 833
BsnI	GGCC	2 cut(s)	510, 586
BsoBI	CYCGRG	1 cut(s)	724
Bsp119I	TTCGAA	1 cut(s)	777
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	227, 391, 492, 651
BspACI	CCGC	3 cut(s)	195, 593, 816
BspANI	GGCC	2 cut(s)	510, 586
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	2 cut(s)	372, 577
BspPI	GGATC	2 cut(s)	235, 487
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	777
BsrDI	GCAATG	1 cut(s)	846
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	487, 772
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	581, 725, 760
BssMI	GATC	4 cut(s)	227, 391, 492, 651
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	3 cut(s)	471, 512, 762
Bst4CI	ACNGT	4 cut(s)	65, 139, 679, 740
Bst6I	CTCTTC	3 cut(s)	54, 143, 448
BstBI	TTCGAA	1 cut(s)	777
BstDEI	CTNAG	3 cut(s)	275, 637, 833
BstF5I	GGATG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	4 cut(s)	230, 394, 495, 654
BstMAI	GTCTC	3 cut(s)	126, 177, 231
BstMBI	GATC	4 cut(s)	227, 391, 492, 651
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 592, 617, 813
BstNI	CCWGG	3 cut(s)	471, 512, 762
BstPAI	GACNNNNGTC	1 cut(s)	751
BstSCI	CCNGG	3 cut(s)	469, 510, 760
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	148, 331
BstV2I	GAAGAC	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	510, 586
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	135, 606
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	140
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	1 cut(s)	802
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	275, 637, 833
DpnI	GATC	4 cut(s)	229, 393, 494, 653
DpnII	GATC	4 cut(s)	227, 391, 492, 651
EaeI	YGGCCR	2 cut(s)	508, 584
Eam1104I	CTCTTC	3 cut(s)	54, 143, 448
EarI	CTCTTC	3 cut(s)	54, 143, 448
EciI	GGCGGA	2 cut(s)	210, 582
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	724
EcoRII	CCWGG	3 cut(s)	469, 510, 760
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	3 cut(s)	126, 177, 231
FaeI	CATG	1 cut(s)	805
FaiI	YATR	5 cut(s)	429, 557, 789, 803, 809
FaqI	GGGAC	2 cut(s)	384, 833
FatI	CATG	1 cut(s)	801
FauI	CCCGC	1 cut(s)	809
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	162, 345
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	2 cut(s)	162, 345
FspAI	RTGCGCAY	1 cut(s)	806
FspI	TGCGCA	1 cut(s)	806
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	2 cut(s)	162, 345
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	510, 586
HapII	CCGG	2 cut(s)	143, 374
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	1 cut(s)	805
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	706
HpaII	CCGG	2 cut(s)	143, 374
HphI	GGTGA	2 cut(s)	30, 839
Hpy166II	GTNNAC	2 cut(s)	476, 830
Hpy188I	TCNGA	3 cut(s)	58, 86, 746
Hpy188III	TCNNGA	8 cut(s)	225, 231, 288, 395, 655, 690, 724, 734
Hpy8I	GTNNAC	2 cut(s)	476, 830
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	4 cut(s)	65, 139, 679, 740
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	254, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 592, 617, 813
HpyF3I	CTNAG	3 cut(s)	275, 637, 833
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	1 cut(s)	805
HspAI	GCGC	1 cut(s)	805
Kzo9I	GATC	4 cut(s)	227, 391, 492, 651
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	2 cut(s)	148, 331
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	4 cut(s)	24, 203, 499, 781
MalI	GATC	4 cut(s)	229, 393, 494, 653
MboI	GATC	4 cut(s)	227, 391, 492, 651
MboII	GAAGA	5 cut(s)	3, 41, 160, 435, 694
MhlI	GDGCHC	1 cut(s)	580
MlsI	TGGCCA	2 cut(s)	510, 586
MluCI	AATT	4 cut(s)	166, 249, 269, 569
MluNI	TGGCCA	2 cut(s)	510, 586
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	9 cut(s)	81, 167, 227, 293, 411, 556, 720, 720, 818
Mox20I	TGGCCA	2 cut(s)	510, 586
MscI	TGGCCA	2 cut(s)	510, 586
MseI	TTAA	4 cut(s)	104, 293, 383, 853
Msp20I	TGGCCA	2 cut(s)	510, 586
MspI	CCGG	2 cut(s)	143, 374
MspR9I	CCNGG	3 cut(s)	471, 512, 762
MvaI	CCWGG	3 cut(s)	471, 512, 762
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	4 cut(s)	341, 592, 617, 813
NdeII	GATC	4 cut(s)	227, 391, 492, 651
NlaIII	CATG	1 cut(s)	805
NlaIV	GGNNCC	2 cut(s)	372, 577
NmuCI	GTSAC	2 cut(s)	24, 203
NsbI	TGCGCA	1 cut(s)	806
NspV	TTCGAA	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	706
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	163, 346
PshAI	GACNNNNGTC	1 cut(s)	751
Psp6I	CCWGG	3 cut(s)	469, 510, 760
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	3 cut(s)	469, 510, 760
PspN4I	GGNNCC	2 cut(s)	372, 577
PspPI	GGNCC	1 cut(s)	371
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	104, 293, 383, 853
SatI	GCNGC	2 cut(s)	162, 345
Sau3AI	GATC	4 cut(s)	227, 391, 492, 651
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	471, 512, 762
SduI	GDGCHC	1 cut(s)	580
SfuI	TTCGAA	1 cut(s)	777
SinI	GGWCC	1 cut(s)	371
Sse9I	AATT	4 cut(s)	166, 249, 269, 569
SsiI	CCGC	3 cut(s)	195, 593, 816
StyD4I	CCNGG	3 cut(s)	469, 510, 760
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	4 cut(s)	65, 139, 679, 740
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	777
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	4 cut(s)	166, 249, 269, 569
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	4 cut(s)	104, 293, 383, 853
Tru9I	TTAA	4 cut(s)	104, 293, 383, 853
TscAI	CASTG	2 cut(s)	142, 613
TseFI	GTSAC	2 cut(s)	24, 203
TseI	GCWGC	2 cut(s)	161, 344
Tsp45I	GTSAC	2 cut(s)	24, 203
TspGWI	ACGGA	2 cut(s)	538, 702
TspRI	CASTG	2 cut(s)	142, 613
VpaK11BI	GGWCC	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.