Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

10760510 .. 10769568

Gene Structure 9059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTTCTCTAACCTGTCTTCCTTGTACTCTACACACTGTCTCTCCCTGTTCTTCTTCTTCTTCTTCTTCTTCTTGCACCACGTGTCTTGTTGCGGGCAACCCAAAACGAGGTCGTTTCGGTTTGAAGAACAGCCACCGCAGACAAAGCTTTGCTCTGACTACTAGAGCTGCTGTTGACGGCGTCTCTTCTGCTGTGGACGATGTTTCTAGTGCGGCTAAAGGCGCCGTGGATGACGTCACGTCTCTGGGAAGATCGCCGTTAAAGCTCAAGTTATTGAGTGCTGTTGCCGGGCTAAATAATGGTCTTGCAGCGAGTGAAGATGATCTACGAAAGGCAGATGCTGCTGCCAAGGAGCTTGAAGCTGCTGGAGGCCCAGTGGATCTCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAACTGGTATATAGCAGTGCATTTTCTTCTCGTACTCTTGGTGGGAGCCGCCCTGGGCCTCCCATTGGAAGGCTCCTCCCAATTACTCTCGGCCAGGTATTTCAACGGATTGACATCGTAAGCAAAGACTTTGATAACATAGTGGAGGTTCAACTAGGTGCTCCATGGCCCCTGCCGCCTATTGATGTAACTGCCACTTTAGCCCACAAATTTGAACTCATAGGCACCGCAAGGGTTAAGATCAAATTCGACAAAACCACTGTAAAGACAACTGGAAGCTTATCACAACTTCCTCCATTAGAGATTCCTAGGATACCTGATGGACTAAGGCCATCATCTAACCCTGGCAGTGGTGAATTTGAAGTAACCTATGTTGATACCGATACCCGAATCACTAGGGGAGATAGAGATGAGCTAAGGGTTTTTGTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

285

Amino Acids

30.13

Weight (kDa)

8.81

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	88 - 282	2.6e-42	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	224, 644
AciI	CCGC	6 cut(s)	95, 139, 215, 469, 596, 648
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	3 cut(s)	629, 665, 776
AcvI	CACGTG	1 cut(s)	84
AcyI	GRCGYC	3 cut(s)	183, 225, 237
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	28, 454
AfiI	CCNNNNNNNGG	4 cut(s)	110, 485, 489, 770
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	127, 362, 524, 572, 635, 782
AhdI	GACNNNNNGTC	1 cut(s)	241
AjiI	CACGTC	1 cut(s)	243
AjnI	CCWGG	3 cut(s)	472, 513, 763
AluBI	AGCT	7 cut(s)	150, 170, 268, 358, 365, 699, 835
AluI	AGCT	7 cut(s)	150, 170, 268, 358, 365, 699, 835
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	3 cut(s)	46, 190, 249
AlwI	GGATC	1 cut(s)	390
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	5 cut(s)	373, 476, 511, 587, 749
ApeKI	GCWGC	5 cut(s)	170, 311, 344, 347, 365
ApoI	RAATTY	3 cut(s)	629, 665, 776
AspA2I	CCTAGG	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	374, 476, 588
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	785
AvrII	CCTAGG	1 cut(s)	728
BanI	GGYRCC	2 cut(s)	224, 644
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbrPI	CACGTG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	5 cut(s)	157, 323, 331, 334, 352
BccI	CCATC	3 cut(s)	411, 734, 760
BceAI	ACGGC	3 cut(s)	196, 212, 244
BciT130I	CCWGG	3 cut(s)	474, 515, 765
BciVI	GTATCC	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	3 cut(s)	46, 190, 249
BfaI	CTAG	5 cut(s)	165, 210, 575, 729, 816
BfoI	RGCGCY	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	8 cut(s)	171, 216, 312, 345, 348, 366, 469, 596
BlnI	CCTAGG	1 cut(s)	728
BlsI	GCNGC	8 cut(s)	172, 217, 313, 346, 349, 367, 470, 597
Bme1390I	CCNGG	4 cut(s)	292, 474, 515, 765
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	374, 476, 588
BmiI	GGNNCC	5 cut(s)	226, 467, 494, 590, 646
BmrFI	CCNGG	4 cut(s)	292, 474, 515, 765
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	3 cut(s)	183, 225, 237
BsaJI	CCNNGG	7 cut(s)	228, 351, 472, 473, 584, 728, 763
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 363, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 485, 489, 770
Bse1I	ACTGG	3 cut(s)	377, 429, 697
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	3 cut(s)	474, 515, 765
BseDI	CCNNGG	7 cut(s)	228, 351, 472, 473, 584, 728, 763
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	4 cut(s)	110, 485, 489, 770
BseNI	ACTGG	3 cut(s)	377, 429, 697
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	5 cut(s)	157, 323, 331, 334, 352
BshFI	GGCC	5 cut(s)	375, 478, 513, 589, 751
BshNI	GGYRCC	2 cut(s)	224, 644
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	4 cut(s)	110, 485, 489, 770
BsmAI	GTCTC	3 cut(s)	46, 190, 249
BsmBI	CGTCTC	2 cut(s)	190, 249
BsnI	GGCC	5 cut(s)	375, 478, 513, 589, 751
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	5 cut(s)	254, 325, 382, 394, 660
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	6 cut(s)	95, 139, 215, 469, 596, 648
BspANI	GGCC	5 cut(s)	375, 478, 513, 589, 751
BspLI	GGNNCC	5 cut(s)	226, 467, 494, 590, 646
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	2 cut(s)	224, 644
BsrI	ACTGG	3 cut(s)	377, 429, 697
BssECI	CCNNGG	7 cut(s)	228, 351, 472, 473, 584, 728, 763
BssMI	GATC	5 cut(s)	254, 325, 382, 394, 660
BssNI	GRCGYC	3 cut(s)	183, 225, 237
BssT1I	CCWWGG	3 cut(s)	351, 584, 728
Bst2UI	CCWGG	3 cut(s)	474, 515, 765
Bst4CI	ACNGT	2 cut(s)	40, 682
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	3 cut(s)	183, 225, 237
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	746, 836
BstDSI	CCRYGG	2 cut(s)	228, 584
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	5 cut(s)	257, 328, 385, 397, 663
BstMAI	GTCTC	3 cut(s)	46, 190, 249
BstMBI	GATC	5 cut(s)	254, 325, 382, 394, 660
BstMWI	GCNNNNNNNGC	6 cut(s)	147, 224, 265, 344, 595, 620
BstNI	CCWGG	3 cut(s)	474, 515, 765
BstSCI	CCNGG	4 cut(s)	290, 472, 513, 763
BstV1I	GCAGC	5 cut(s)	157, 323, 331, 334, 352
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	5 cut(s)	375, 478, 513, 589, 751
BtgI	CCRYGG	2 cut(s)	228, 584
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	2 cut(s)	442, 775
BtsIMutI	CAGTG	5 cut(s)	36, 384, 442, 678, 775
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	374, 476, 588
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	27, 453
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	1 cut(s)	585
CviQI	GTAC	2 cut(s)	27, 453
DdeI	CTNAG	2 cut(s)	746, 836
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	5 cut(s)	256, 327, 384, 396, 662
DpnII	GATC	5 cut(s)	254, 325, 382, 394, 660
DraIII	CACNNNGTG	1 cut(s)	84
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	351, 584, 728
Eco72I	CACGTG	1 cut(s)	84
EcoRII	CCWGG	3 cut(s)	472, 513, 763
EcoT14I	CCWWGG	3 cut(s)	351, 584, 728
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	3 cut(s)	351, 584, 728
Esp3I	CGTCTC	2 cut(s)	190, 249
FaeI	CATG	1 cut(s)	588
FaiI	YATR	6 cut(s)	430, 432, 560, 586, 641, 792
FatI	CATG	1 cut(s)	584
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	8 cut(s)	171, 216, 312, 345, 348, 366, 469, 596
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	8 cut(s)	171, 216, 312, 345, 348, 366, 469, 596
FspBI	CTAG	5 cut(s)	165, 210, 575, 729, 816
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	8 cut(s)	171, 216, 312, 345, 348, 366, 469, 596
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	5 cut(s)	375, 478, 513, 589, 751
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	3 cut(s)	183, 225, 237
Hin1II	CATG	1 cut(s)	588
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	148, 697
HinfI	GANTC	2 cut(s)	724, 810
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	2 cut(s)	178, 199
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	178, 199
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	2 cut(s)	40, 682
HpyCH4IV	ACGT	3 cut(s)	83, 237, 242
HpyCH4V	TGCA	4 cut(s)	78, 311, 409, 440
HpyF10VI	GCNNNNNNNGC	6 cut(s)	147, 224, 265, 344, 595, 620
HpyF3I	CTNAG	2 cut(s)	746, 836
HpySE526I	ACGT	3 cut(s)	83, 237, 242
Hsp92I	GRCGYC	3 cut(s)	183, 225, 237
Hsp92II	CATG	1 cut(s)	588
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	5 cut(s)	254, 325, 382, 394, 660
LmnI	GCTCC	4 cut(s)	355, 465, 498, 586
Lsp1109I	GCAGC	5 cut(s)	157, 323, 331, 334, 352
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	5 cut(s)	165, 210, 575, 729, 816
MaeII	ACGT	3 cut(s)	83, 237, 242
MaeIII	GTNAC	3 cut(s)	238, 607, 784
MalI	GATC	5 cut(s)	256, 327, 384, 396, 662
MboI	GATC	5 cut(s)	254, 325, 382, 394, 660
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	4 cut(s)	501, 629, 665, 776
Mly113I	GGCGCC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	104, 365, 489, 506, 559, 723
MseI	TTAA	2 cut(s)	263, 657
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	4 cut(s)	292, 474, 515, 765
MvaI	CCWGG	3 cut(s)	474, 515, 765
MwoI	GCNNNNNNNGC	6 cut(s)	147, 224, 265, 344, 595, 620
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	5 cut(s)	254, 325, 382, 394, 660
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	5 cut(s)	226, 467, 494, 590, 646
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	724, 810
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	8 cut(s)	172, 217, 313, 346, 349, 367, 470, 597
PluTI	GGCGCC	1 cut(s)	228
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	84
Psp6I	CCWGG	3 cut(s)	472, 513, 763
PspCI	CACGTG	1 cut(s)	84
PspGI	CCWGG	3 cut(s)	472, 513, 763
PspN4I	GGNNCC	5 cut(s)	226, 467, 494, 590, 646
PspPI	GGNCC	3 cut(s)	374, 476, 588
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	28, 454
RsaNI	GTAC	2 cut(s)	27, 453
SaqAI	TTAA	2 cut(s)	263, 657
SatI	GCNGC	8 cut(s)	171, 216, 312, 345, 348, 366, 469, 596
Sau3AI	GATC	5 cut(s)	254, 325, 382, 394, 660
Sau96I	GGNCC	3 cut(s)	374, 476, 588
ScrFI	CCNGG	4 cut(s)	292, 474, 515, 765
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	1 cut(s)	331
SfoI	GGCGCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	501, 629, 665, 776
SsiI	CCGC	6 cut(s)	95, 139, 215, 469, 596, 648
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	5 cut(s)	165, 210, 575, 729, 816
StyD4I	CCNGG	4 cut(s)	290, 472, 513, 763
StyI	CCWWGG	3 cut(s)	351, 584, 728
TaaI	ACNGT	2 cut(s)	40, 682
TaiI	ACGT	3 cut(s)	86, 240, 245
TaqI	TCGA	1 cut(s)	669
TasI	AATT	4 cut(s)	501, 629, 665, 776
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	3 cut(s)	218, 471, 598
TfiI	GAWTC	2 cut(s)	724, 810
Tru1I	TTAA	2 cut(s)	263, 657
Tru9I	TTAA	2 cut(s)	263, 657
TscAI	CASTG	5 cut(s)	43, 384, 442, 685, 775
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	5 cut(s)	170, 311, 344, 347, 365
Tsp45I	GTSAC	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	5 cut(s)	43, 384, 442, 685, 775
Tth111I	GACNNNGTC	1 cut(s)	182
XapI	RAATTY	3 cut(s)	629, 665, 776
XmaJI	CCTAGG	1 cut(s)	728
XspI	CTAG	5 cut(s)	165, 210, 575, 729, 816
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.