Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

22147808 .. 22151754

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1221800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGTCGTCTCAAAACAAACAATATAAACTCTCAAAGAGCCAAGACCTTTCCTTCTACTTTCTAGCCATGGCCATGGCTTCTTTGAGCTCTCTCCCTCACTCTCTACAGTCCTCGCCTTCTACTTCTTCTGCAAACTATGTTATTCCAAGCAAACCACCCTGCCCAAAACGCCTCCGTTTTGGTTCGTCAAATCGCCGTCACACCAAAAGCTTTGCTCCGAGAGCAGCTGTGGACGAGGTTTCTGTTCTCGAACCGCCGCCACCACAGCCGCCGTCTTCCGGAAGCAAAACCACGCCCAACCCTGAACTTGTAGCGTCTTTAAAGCTCAACCTATTGAGTGCTGTTTCTGGGCTAAATAGAGGTCTTGCAGCATCGGGAGAGGATCTACAAAAGGCAGAAGCTGCTGCCAAGGAGATTGAAGCTGCTGGAGGTCCAGTGGATCTCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAATTGATATATAGCAGTGCATTTTCTTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACCGGAAGGCTACTCCCAATTACCTTAGGCCAGGTATTTCAACGGATTGATATCTTCAGCAAAGACTTTGATAACATAGTGGAGCTTGAACTAGGTGCTCCATGGCCCCTGCCGCCCGTTGAAGCAACTGCCACTTTGGCCCACAAATTTGAACTCATAGGATCTTCCAGGGTTAAGATCATTTTTGAGAAAACTACTGTGAAGACTACTGGAAACTTATCGCAGCTTCCTCCATTAGAGTTACCTAAGTTACCAGAAGGACTACGACCTCCGTCTAACCCAGGAAGTGGTGAATTTGACGTTACCTACCTTGATGCTGATATCCGCATCACCAGAGGAGATAGAGACGAGCTAAGGGTTTTTGTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

306

Amino Acids

32.83

Weight (kDa)

9.23

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	107 - 302	2.3e-44	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	5 cut(s)	257, 260, 272, 656, 868
AclWI	GGATC	3 cut(s)	393, 450, 712
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	689, 836
AcuI	CTGAAG	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	4 cut(s)	281, 545, 549, 830
AgsI	TTSAA	5 cut(s)	422, 584, 632, 665, 695
AjnI	CCWGG	4 cut(s)	532, 573, 710, 823
AluBI	AGCT	9 cut(s)	90, 213, 230, 328, 404, 425, 628, 769, 895
AluI	AGCT	9 cut(s)	90, 213, 230, 328, 404, 425, 628, 769, 895
Alw21I	GWGCWC	2 cut(s)	92, 643
Alw26I	GTCTC	2 cut(s)	15, 882
AlwI	GGATC	3 cut(s)	393, 450, 712
AlwNI	CAGNNNCTG	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	4 cut(s)	72, 571, 647, 681
ApeKI	GCWGC	6 cut(s)	227, 371, 404, 407, 425, 766
ApoI	RAATTY	2 cut(s)	689, 836
AspS9I	GGNCC	4 cut(s)	434, 536, 648, 682
AsuHPI	GGTGA	2 cut(s)	845, 865
AvaII	GGWCC	2 cut(s)	434, 536
AxyI	CCTNAGG	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	92
BbsI	GAAGAC	2 cut(s)	270, 752
Bbv12I	GWGCWC	2 cut(s)	92, 643
BbvI	GCAGC	6 cut(s)	239, 383, 391, 394, 412, 778
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	3 cut(s)	183, 259, 513
BciT130I	CCWGG	4 cut(s)	534, 575, 712, 825
BcoDI	GTCTC	2 cut(s)	15, 882
BfaI	CTAG	3 cut(s)	65, 518, 635
BfmI	CTRYAG	1 cut(s)	107
BglI	GCCNNNNNGGC	1 cut(s)	680
BisI	GCNGC	9 cut(s)	228, 260, 272, 372, 405, 408, 426, 656, 767
BlsI	GCNGC	9 cut(s)	229, 261, 273, 373, 406, 409, 427, 657, 768
Bme1390I	CCNGG	4 cut(s)	534, 575, 712, 825
Bme18I	GGWCC	2 cut(s)	434, 536
BmgT120I	GGNCC	4 cut(s)	434, 536, 648, 682
BmiI	GGNNCC	2 cut(s)	527, 650
BmrFI	CCNGG	4 cut(s)	534, 575, 712, 825
BmsI	GCATC	3 cut(s)	383, 847, 879
BoxI	GACNNNNGTC	1 cut(s)	814
BpiI	GAAGAC	2 cut(s)	270, 752
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	896
BsaBI	GATNNNNATC	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	6 cut(s)	69, 75, 411, 644, 711, 823
BsaWI	WCCGGW	2 cut(s)	281, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 545, 549, 830
Bse1I	ACTGG	2 cut(s)	437, 757
Bse21I	CCTNAGG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	4 cut(s)	534, 575, 712, 825
BseDI	CCNNGG	6 cut(s)	69, 75, 411, 644, 711, 823
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	4 cut(s)	281, 545, 549, 830
BseNI	ACTGG	2 cut(s)	437, 757
BseRI	GAGGAG	1 cut(s)	894
BseXI	GCAGC	6 cut(s)	239, 383, 391, 394, 412, 778
BshFI	GGCC	4 cut(s)	74, 573, 649, 683
BsiHKAI	GWGCWC	2 cut(s)	92, 643
BsiSI	CCGG	2 cut(s)	282, 546
BslI	CCNNNNNNNGG	4 cut(s)	281, 545, 549, 830
BsmAI	GTCTC	2 cut(s)	15, 882
BsmBI	CGTCTC	2 cut(s)	15, 882
BsnI	GGCC	4 cut(s)	74, 573, 649, 683
Bsp1286I	GDGCHC	2 cut(s)	92, 643
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	5 cut(s)	385, 442, 454, 704, 720
Bsp19I	CCATGG	3 cut(s)	69, 75, 644
BspACI	CCGC	5 cut(s)	257, 260, 272, 656, 868
BspANI	GGCC	4 cut(s)	74, 573, 649, 683
BspEI	TCCGGA	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	527, 650
BspPI	GGATC	3 cut(s)	393, 450, 712
BsrI	ACTGG	2 cut(s)	437, 757
BssECI	CCNNGG	6 cut(s)	69, 75, 411, 644, 711, 823
BssMI	GATC	5 cut(s)	385, 442, 454, 704, 720
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	4 cut(s)	69, 75, 411, 644
Bst2UI	CCWGG	4 cut(s)	534, 575, 712, 825
Bst4CI	ACNGT	2 cut(s)	111, 742
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	568, 789, 896
BstDSI	CCRYGG	3 cut(s)	69, 75, 644
BstKTI	GATC	5 cut(s)	388, 445, 457, 707, 723
BstMAI	GTCTC	2 cut(s)	15, 882
BstMBI	GATC	5 cut(s)	385, 442, 454, 704, 720
BstMWI	GCNNNNNNNGC	6 cut(s)	171, 224, 268, 404, 655, 680
BstNI	CCWGG	4 cut(s)	534, 575, 712, 825
BstPAI	GACNNNNGTC	1 cut(s)	814
BstSCI	CCNGG	4 cut(s)	532, 573, 710, 823
BstSFI	CTRYAG	1 cut(s)	107
BstV1I	GCAGC	6 cut(s)	239, 383, 391, 394, 412, 778
BstV2I	GAAGAC	2 cut(s)	270, 752
BstX2I	RGATCY	3 cut(s)	385, 442, 704
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	3 cut(s)	385, 442, 704
Bsu36I	CCTNAGG	1 cut(s)	568
BsuRI	GGCC	4 cut(s)	74, 573, 649, 683
BtgI	CCRYGG	3 cut(s)	69, 75, 644
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	2 cut(s)	444, 502
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	4 cut(s)	434, 536, 648, 682
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	3 cut(s)	70, 76, 645
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	3 cut(s)	568, 789, 896
DpnI	GATC	5 cut(s)	387, 444, 456, 706, 722
DpnII	GATC	5 cut(s)	385, 442, 454, 704, 720
DraI	TTTAAA	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	4 cut(s)	69, 75, 411, 644
Eco24I	GRGCYC	1 cut(s)	92
Eco32I	GATATC	2 cut(s)	595, 865
Eco47I	GGWCC	2 cut(s)	434, 536
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	90
EcoRII	CCWGG	4 cut(s)	532, 573, 710, 823
EcoRV	GATATC	2 cut(s)	595, 865
EcoT14I	CCWWGG	4 cut(s)	69, 75, 411, 644
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	4 cut(s)	69, 75, 411, 644
Esp3I	CGTCTC	2 cut(s)	15, 882
FaeI	CATG	3 cut(s)	73, 79, 648
FatI	CATG	3 cut(s)	69, 75, 644
Fnu4HI	GCNGC	9 cut(s)	228, 260, 272, 372, 405, 408, 426, 656, 767
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	9 cut(s)	228, 260, 272, 372, 405, 408, 426, 656, 767
FspBI	CTAG	3 cut(s)	65, 518, 635
GluI	GCNGC	9 cut(s)	228, 260, 272, 372, 405, 408, 426, 656, 767
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	4 cut(s)	74, 573, 649, 683
HapII	CCGG	2 cut(s)	282, 546
HgaI	GACGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	73, 79, 648
HindIII	AAGCTT	1 cut(s)	211
HpaII	CCGG	2 cut(s)	282, 546
HphI	GGTGA	2 cut(s)	845, 865
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	4 cut(s)	251, 282, 378, 458
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	64, 129, 543, 794
HpyCH4III	ACNGT	2 cut(s)	111, 742
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	4 cut(s)	134, 371, 469, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	171, 224, 268, 404, 655, 680
HpyF3I	CTNAG	3 cut(s)	568, 789, 896
HpySE526I	ACGT	1 cut(s)	843
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	73, 79, 648
Kpn2I	TCCGGA	1 cut(s)	281
Kzo9I	GATC	5 cut(s)	385, 442, 454, 704, 720
LmnI	GCTCC	4 cut(s)	223, 525, 625, 646
Lsp1109I	GCAGC	6 cut(s)	239, 383, 391, 394, 412, 778
LweI	GCATC	3 cut(s)	383, 847, 879
MaeI	CTAG	3 cut(s)	65, 518, 635
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	4 cut(s)	200, 783, 792, 844
MalI	GATC	5 cut(s)	387, 444, 456, 706, 722
MboI	GATC	5 cut(s)	385, 442, 454, 704, 720
MboII	GAAGA	6 cut(s)	120, 270, 498, 589, 699, 757
MflI	RGATCY	3 cut(s)	385, 442, 704
MhlI	GDGCHC	2 cut(s)	92, 643
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	4 cut(s)	482, 561, 689, 836
MluNI	TGGCCA	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	2 cut(s)	323, 717
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	282, 546
MspR9I	CCNGG	4 cut(s)	534, 575, 712, 825
MvaI	CCWGG	4 cut(s)	534, 575, 712, 825
MwoI	GCNNNNNNNGC	6 cut(s)	171, 224, 268, 404, 655, 680
NcoI	CCATGG	3 cut(s)	69, 75, 644
NdeII	GATC	5 cut(s)	385, 442, 454, 704, 720
NlaIII	CATG	3 cut(s)	73, 79, 648
NlaIV	GGNNCC	2 cut(s)	527, 650
NmuCI	GTSAC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	9 cut(s)	229, 261, 273, 373, 406, 409, 427, 657, 768
PshAI	GACNNNNGTC	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	4 cut(s)	532, 573, 710, 823
PspGI	CCWGG	4 cut(s)	532, 573, 710, 823
PspN4I	GGNNCC	2 cut(s)	527, 650
PspPI	GGNCC	4 cut(s)	434, 536, 648, 682
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	385, 442, 704
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	323, 717
SatI	GCNGC	9 cut(s)	228, 260, 272, 372, 405, 408, 426, 656, 767
Sau3AI	GATC	5 cut(s)	385, 442, 454, 704, 720
Sau96I	GGNCC	4 cut(s)	434, 536, 648, 682
ScrFI	CCNGG	4 cut(s)	534, 575, 712, 825
SduI	GDGCHC	2 cut(s)	92, 643
SfaNI	GCATC	3 cut(s)	383, 847, 879
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	434, 536
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	482, 561, 689, 836
SsiI	CCGC	5 cut(s)	257, 260, 272, 656, 868
SspMI	CTAG	3 cut(s)	65, 518, 635
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	4 cut(s)	532, 573, 710, 823
StyI	CCWWGG	4 cut(s)	69, 75, 411, 644
TaaI	ACNGT	2 cut(s)	111, 742
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	1 cut(s)	252
TasI	AATT	4 cut(s)	482, 561, 689, 836
TauI	GCSGC	3 cut(s)	262, 274, 658
Tru1I	TTAA	2 cut(s)	323, 717
Tru9I	TTAA	2 cut(s)	323, 717
TscAI	CASTG	2 cut(s)	444, 502
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	6 cut(s)	227, 371, 404, 407, 425, 766
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	903
TspGWI	ACGGA	3 cut(s)	167, 601, 804
TspRI	CASTG	2 cut(s)	444, 502
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	434, 536
XapI	RAATTY	2 cut(s)	689, 836
XspI	CTAG	3 cut(s)	65, 518, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.