Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

20634293 .. 20637153

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACTTCTTCGAGCTCTCTCCCTCACTCTCTACATTCTTCGCCTTCTACTTCTTCTGCAAACTATGTTTTTCCAAGAAAACGACCCTCCCCAAAGCGCCTCCATTTTGGTTCGGCAAATCCCCGTCACACCAAAAGCTTTGCTCTGAGAGCAGCTGCGGACGAGATCTCTTTTGTCGAGCCGCCGCCGCCACCTCTGCCGTCTTCCGGAAGTAAACTTGCGCCCAACCCTGAACTCGTAGCGTCTTTGAAGCTCAAGCTATTGCACTGTGCACGTGGGCTTGCCGTAGTCATGGTCTTTATTTGTAGTGCTGTTTCTGGGTTAAATAGAGGCCTTGCAGCATCGCGAGAGGATCTACAAAAGGCAGATGCTGCTGCCAAGGAGATTGAAGCTGCTGGAGGTCCAGTGGATCTCTCAGCTGATCTTGATAAACTGCAAGGGAGATGGAAACTGATATATAGCAGTGCATTTTCTTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACTGGAAGGCTACTCCCAATTACTTTAGGCCAGGTATTTCAACGGATTGACATCTTCAGCAAAAACTTTGATAACATAGTGGAGCTTGATCTAGGTGTTCCATGGCCCCTACCTCCCGTTGACGCAACTACCACCTTGGCCCACAAATTTGAGCTCATAGAGTTACCTCAGTTACCAGAAGGACTAAGACCTCCGTCTAACCGAGGAAGTGGTGAATTTGACGTTACCTACCTTGACGCAGATACCCGCATCACTAGAGGAGATAGAGACGAGCTGAGGGTATTTGTGATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

269

Amino Acids

28.89

Weight (kDa)

9.14

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	103 - 223	1.8e-22	PAP_fibrillin
PAP_fibrillin	PF04755	226 - 265	6.8e-08	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	206
AciI	CCGC	5 cut(s)	158, 182, 185, 188, 757
AclWI	GGATC	2 cut(s)	360, 417
AcsI	RAATTY	2 cut(s)	656, 725
AcuI	CTGAAG	1 cut(s)	550
AcvI	CACGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	206, 512, 516
AgsI	TTSAA	3 cut(s)	250, 389, 551
AjnI	CCWGG	2 cut(s)	499, 540
Alw21I	GWGCWC	3 cut(s)	17, 274, 666
Alw26I	GTCTC	1 cut(s)	771
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	360, 417
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	4 cut(s)	331, 538, 614, 648
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	6 cut(s)	152, 155, 338, 371, 374, 392
ApoI	RAATTY	2 cut(s)	656, 725
AspLEI	GCGC	2 cut(s)	99, 223
AspS9I	GGNCC	4 cut(s)	401, 503, 615, 649
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	401, 503
BaeGI	GKGCMC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	17, 666
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	3 cut(s)	17, 274, 666
BbvCI	CCTCAGC	1 cut(s)	785
BbvI	GCAGC	6 cut(s)	142, 164, 350, 358, 361, 379
BccI	CCATC	1 cut(s)	438
BceAI	ACGGC	3 cut(s)	184, 269, 480
BciT130I	CCWGG	2 cut(s)	501, 542
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	3 cut(s)	485, 602, 765
BfoI	RGCGCY	1 cut(s)	100
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	9 cut(s)	153, 156, 182, 185, 188, 339, 372, 375, 393
BlsI	GCNGC	9 cut(s)	154, 157, 183, 186, 189, 340, 373, 376, 394
Bme1390I	CCNGG	2 cut(s)	501, 542
Bme18I	GGWCC	2 cut(s)	401, 503
BmgT120I	GGNCC	4 cut(s)	401, 503, 615, 649
BmiI	GGNNCC	2 cut(s)	494, 617
BmrFI	CCNGG	2 cut(s)	501, 542
BmsI	GCATC	3 cut(s)	350, 358, 768
BoxI	GACNNNNGTC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	560
BsaJI	CCNNGG	4 cut(s)	378, 611, 645, 712
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 512, 516
Bse1I	ACTGG	2 cut(s)	404, 517
Bse8I	GATNNNNATC	1 cut(s)	560
BseAI	TCCGGA	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	501, 542
BseDI	CCNNGG	4 cut(s)	378, 611, 645, 712
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	206, 512, 516
BseMII	CTCAG	4 cut(s)	137, 429, 692, 776
BseNI	ACTGG	2 cut(s)	404, 517
BseRI	GAGGAG	1 cut(s)	783
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	6 cut(s)	142, 164, 350, 358, 361, 379
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	333, 540, 616, 650
BsiHKAI	GWGCWC	3 cut(s)	17, 274, 666
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	206, 512, 516
BsmAI	GTCTC	1 cut(s)	771
BsmBI	CGTCTC	1 cut(s)	771
BsnI	GGCC	4 cut(s)	333, 540, 616, 650
Bsp1286I	GDGCHC	3 cut(s)	17, 274, 666
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	5 cut(s)	165, 352, 409, 421, 598
Bsp19I	CCATGG	1 cut(s)	611
Bsp68I	TCGCGA	1 cut(s)	346
BspACI	CCGC	5 cut(s)	158, 182, 185, 188, 757
BspANI	GGCC	4 cut(s)	333, 540, 616, 650
BspCNI	CTCAG	4 cut(s)	138, 428, 691, 777
BspEI	TCCGGA	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	494, 617
BspPI	GGATC	2 cut(s)	360, 417
BsrI	ACTGG	2 cut(s)	404, 517
BssECI	CCNNGG	4 cut(s)	378, 611, 645, 712
BssMI	GATC	5 cut(s)	165, 352, 409, 421, 598
BssT1I	CCWWGG	3 cut(s)	378, 611, 645
Bst2UI	CCWGG	2 cut(s)	501, 542
Bst4CI	ACNGT	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	5 cut(s)	146, 415, 678, 695, 785
BstDSI	CCRYGG	1 cut(s)	611
BstFNI	CGCG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 223
BstKTI	GATC	5 cut(s)	168, 355, 412, 424, 601
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	5 cut(s)	165, 352, 409, 421, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 187, 196, 371
BstNI	CCWGG	2 cut(s)	501, 542
BstPAI	GACNNNNGTC	1 cut(s)	703
BstSCI	CCNGG	2 cut(s)	499, 540
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	6 cut(s)	142, 164, 350, 358, 361, 379
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	3 cut(s)	165, 352, 409
BstYI	RGATCY	3 cut(s)	165, 352, 409
BsuRI	GGCC	4 cut(s)	333, 540, 616, 650
BtgI	CCRYGG	1 cut(s)	611
BtgZI	GCGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	4 cut(s)	265, 411, 469, 510
BtuMI	TCGCGA	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	2 cut(s)	99, 223
Cfr13I	GGNCC	4 cut(s)	401, 503, 615, 649
CseI	GACGC	3 cut(s)	231, 641, 755
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	2 cut(s)	292, 612
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	5 cut(s)	146, 415, 678, 695, 785
DpnI	GATC	5 cut(s)	167, 354, 411, 423, 600
DpnII	GATC	5 cut(s)	165, 352, 409, 421, 598
Ecl136II	GAGCTC	2 cut(s)	15, 664
Eco130I	CCWWGG	3 cut(s)	378, 611, 645
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	17, 666
Eco47I	GGWCC	2 cut(s)	401, 503
Eco53kI	GAGCTC	2 cut(s)	15, 664
Eco57I	CTGAAG	1 cut(s)	550
Eco72I	CACGTG	1 cut(s)	275
EcoICRI	GAGCTC	2 cut(s)	15, 664
EcoRII	CCWGG	2 cut(s)	499, 540
EcoT14I	CCWWGG	3 cut(s)	378, 611, 645
EcoT38I	GRGCYC	2 cut(s)	17, 666
ErhI	CCWWGG	3 cut(s)	378, 611, 645
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	2 cut(s)	295, 615
FaiI	YATR	8 cut(s)	66, 293, 457, 459, 587, 613, 668, 805
FatI	CATG	2 cut(s)	291, 611
FauI	CCCGC	1 cut(s)	764
Fnu4HI	GCNGC	9 cut(s)	153, 156, 182, 185, 188, 339, 372, 375, 393
FriOI	GRGCYC	2 cut(s)	17, 666
Fsp4HI	GCNGC	9 cut(s)	153, 156, 182, 185, 188, 339, 372, 375, 393
FspBI	CTAG	3 cut(s)	485, 602, 765
GlaI	GCGC	2 cut(s)	98, 222
GluI	GCNGC	9 cut(s)	153, 156, 182, 185, 188, 339, 372, 375, 393
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	4 cut(s)	333, 540, 616, 650
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	3 cut(s)	231, 641, 755
HhaI	GCGC	2 cut(s)	99, 223
Hin1II	CATG	2 cut(s)	295, 615
Hin6I	GCGC	2 cut(s)	97, 221
HinP1I	GCGC	2 cut(s)	97, 221
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	136
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	3 cut(s)	215, 272, 631
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	207, 345, 425
Hpy8I	GTNNAC	3 cut(s)	215, 272, 631
HpyAV	CCTTC	3 cut(s)	54, 510, 683
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	274, 732
HpyCH4V	TGCA	6 cut(s)	59, 265, 272, 338, 436, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 187, 196, 371
HpyF3I	CTNAG	5 cut(s)	146, 415, 678, 695, 785
HpySE526I	ACGT	2 cut(s)	274, 732
Hsp92II	CATG	2 cut(s)	295, 615
HspAI	GCGC	2 cut(s)	97, 221
Kpn2I	TCCGGA	1 cut(s)	206
Kzo9I	GATC	5 cut(s)	165, 352, 409, 421, 598
LmnI	GCTCC	2 cut(s)	492, 592
Lsp1109I	GCAGC	6 cut(s)	142, 164, 350, 358, 361, 379
LweI	GCATC	3 cut(s)	350, 358, 768
MaeI	CTAG	3 cut(s)	485, 602, 765
MaeII	ACGT	2 cut(s)	274, 732
MaeIII	GTNAC	4 cut(s)	125, 672, 681, 733
MalI	GATC	5 cut(s)	167, 354, 411, 423, 600
MboI	GATC	5 cut(s)	165, 352, 409, 421, 598
MboII	GAAGA	5 cut(s)	30, 45, 195, 465, 556
MflI	RGATCY	3 cut(s)	165, 352, 409
MhlI	GDGCHC	3 cut(s)	17, 274, 666
MluCI	AATT	3 cut(s)	528, 656, 725
MroI	TCCGGA	1 cut(s)	206
MseI	TTAA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	155, 419
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	501, 542
MvaI	CCWGG	2 cut(s)	501, 542
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	4 cut(s)	149, 187, 196, 371
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	5 cut(s)	165, 352, 409, 421, 598
NlaIII	CATG	2 cut(s)	295, 615
NlaIV	GGNNCC	2 cut(s)	494, 617
NmuCI	GTSAC	1 cut(s)	125
NruI	TCGCGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	9 cut(s)	154, 157, 183, 186, 189, 340, 373, 376, 394
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	703
Psp124BI	GAGCTC	2 cut(s)	17, 666
Psp6I	CCWGG	2 cut(s)	499, 540
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	499, 540
PspN4I	GGNNCC	2 cut(s)	494, 617
PspPI	GGNCC	4 cut(s)	401, 503, 615, 649
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	3 cut(s)	165, 352, 409
PvuII	CAGCTG	2 cut(s)	155, 419
RruI	TCGCGA	1 cut(s)	346
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SacI	GAGCTC	2 cut(s)	17, 666
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	9 cut(s)	153, 156, 182, 185, 188, 339, 372, 375, 393
Sau3AI	GATC	5 cut(s)	165, 352, 409, 421, 598
Sau96I	GGNCC	4 cut(s)	401, 503, 615, 649
ScrFI	CCNGG	2 cut(s)	501, 542
SduI	GDGCHC	3 cut(s)	17, 274, 666
SfaNI	GCATC	3 cut(s)	350, 358, 768
SinI	GGWCC	2 cut(s)	401, 503
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	528, 656, 725
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	5 cut(s)	158, 182, 185, 188, 757
SspMI	CTAG	3 cut(s)	485, 602, 765
SstI	GAGCTC	2 cut(s)	17, 666
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	499, 540
StyI	CCWWGG	3 cut(s)	378, 611, 645
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	2 cut(s)	277, 735
TaqI	TCGA	2 cut(s)	11, 177
TasI	AATT	3 cut(s)	528, 656, 725
TauI	GCSGC	3 cut(s)	184, 187, 190
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	4 cut(s)	272, 411, 469, 517
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	6 cut(s)	152, 155, 338, 371, 374, 392
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	2 cut(s)	568, 693
TspRI	CASTG	4 cut(s)	272, 411, 469, 517
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	401, 503
XapI	RAATTY	2 cut(s)	656, 725
XspI	CTAG	3 cut(s)	485, 602, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.