Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

7647157 .. 7649638

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTTCAGAGTGCTGTTGCCGGGCTAAATAATGGTCTTGCAGCGAGTGAAGATGATATACGAAAGGCAGATGCTGCTGCCAAGGAGCTTGAAGCTGCTGGAGGCCCAGTGGATCTCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAACTGGTATATAGCAGCGCATTTTCTTCTCGTACTCTTGGCGGGAGCCGCCCTGGACCTCCCATTGGAAGGCTCCTCCCAATTTCTCTCGGCCAGGTATTTCAACGGATTGACATCGTAAGCAAAGACTTTGATAACATAGCAGAGGTTCAACTAGGTGCACCATGGCCCCTGCCGCCTATTGATATAACTGCCACTTTAGCCCACAAATTTGAACTCATAGGCACCGCAAAGGTTAAGATCATATTTGACAAAACCACTGTAAAGACAACTGGAAGCTTATCACAGCTTCCTCCATTGGAGATTCCTAGGATACCTGATGGACTAAGGCCATCATCTAACCCTGGCAGTGGTGAATTTGAAGTAACCTATGTTGATGCCGATACCCGAATCACCAGAGGAGATAGAGATGAGCTGAGGGTTTTTGTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

195

Amino Acids

20.87

Weight (kDa)

5.26

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	3 - 192	3.9e-38	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	4 cut(s)	192, 199, 326, 378
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	359, 506
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	215, 219, 500
AgsI	TTSAA	5 cut(s)	92, 254, 302, 365, 512
AjnI	CCWGG	3 cut(s)	202, 243, 493
AluBI	AGCT	5 cut(s)	88, 95, 429, 439, 565
AluI	AGCT	5 cut(s)	88, 95, 429, 439, 565
Alw21I	GWGCWC	1 cut(s)	313
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	4 cut(s)	103, 241, 317, 479
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	5 cut(s)	41, 74, 77, 95, 165
ApoI	RAATTY	2 cut(s)	359, 506
AspA2I	CCTAGG	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	104, 206, 318
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	515, 535
AvaII	GGWCC	1 cut(s)	206
AvrII	CCTAGG	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	374
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
Bbv12I	GWGCWC	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	566
BbvI	GCAGC	5 cut(s)	53, 61, 64, 82, 177
BccI	CCATC	3 cut(s)	141, 464, 490
BciT130I	CCWGG	3 cut(s)	204, 245, 495
BciVI	GTATCC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	2 cut(s)	305, 459
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	7 cut(s)	42, 75, 78, 96, 166, 199, 326
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	7 cut(s)	43, 76, 79, 97, 167, 200, 327
Bme1390I	CCNGG	4 cut(s)	22, 204, 245, 495
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	104, 206, 318
BmiI	GGNNCC	4 cut(s)	197, 224, 320, 376
BmrFI	CCNGG	4 cut(s)	22, 204, 245, 495
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	61, 517
BmuI	ACTGGG	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	566
BpuMI	CCSGG	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	5 cut(s)	81, 202, 314, 458, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 219, 500
Bse1I	ACTGG	3 cut(s)	107, 159, 427
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	3 cut(s)	204, 245, 495
BseDI	CCNNGG	5 cut(s)	81, 202, 314, 458, 493
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	215, 219, 500
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	3 cut(s)	107, 159, 427
BseRI	GAGGAG	2 cut(s)	215, 564
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	5 cut(s)	53, 61, 64, 82, 177
BshFI	GGCC	4 cut(s)	105, 243, 319, 481
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	215, 219, 500
BsnI	GGCC	4 cut(s)	105, 243, 319, 481
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	112, 124, 390
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	192, 199, 326, 378
BspANI	GGCC	4 cut(s)	105, 243, 319, 481
BspCNI	CTCAG	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	197, 224, 320, 376
BspPI	GGATC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	374
BsrI	ACTGG	3 cut(s)	107, 159, 427
BssECI	CCNNGG	5 cut(s)	81, 202, 314, 458, 493
BssMI	GATC	3 cut(s)	112, 124, 390
BssT1I	CCWWGG	3 cut(s)	81, 314, 458
Bst2UI	CCWGG	3 cut(s)	204, 245, 495
Bst4CI	ACNGT	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	476, 566
BstDSI	CCRYGG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	115, 127, 393
BstMBI	GATC	3 cut(s)	112, 124, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 198, 325, 350
BstNI	CCWGG	3 cut(s)	204, 245, 495
BstSCI	CCNGG	4 cut(s)	20, 202, 243, 493
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	5 cut(s)	53, 61, 64, 82, 177
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	105, 243, 319, 481
BtgI	CCRYGG	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	114, 408, 505
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	104, 206, 318
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	315
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	476, 566
DpnI	GATC	3 cut(s)	114, 126, 392
DpnII	GATC	3 cut(s)	112, 124, 390
EaeI	YGGCCR	1 cut(s)	241
Eco130I	CCWWGG	3 cut(s)	81, 314, 458
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	202, 243, 493
EcoT14I	CCWWGG	3 cut(s)	81, 314, 458
ErhI	CCWWGG	3 cut(s)	81, 314, 458
FaeI	CATG	1 cut(s)	318
FaiI	YATR	9 cut(s)	59, 160, 162, 290, 316, 338, 371, 395, 522
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	7 cut(s)	42, 75, 78, 96, 166, 199, 326
Fsp4HI	GCNGC	7 cut(s)	42, 75, 78, 96, 166, 199, 326
FspBI	CTAG	2 cut(s)	305, 459
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	7 cut(s)	42, 75, 78, 96, 166, 199, 326
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	105, 243, 319, 481
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	2 cut(s)	454, 540
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	515, 535
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	3 cut(s)	41, 139, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 198, 325, 350
HpyF3I	CTNAG	2 cut(s)	476, 566
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	112, 124, 390
LmnI	GCTCC	3 cut(s)	85, 195, 228
Lsp1109I	GCAGC	5 cut(s)	53, 61, 64, 82, 177
LweI	GCATC	2 cut(s)	61, 517
MaeI	CTAG	2 cut(s)	305, 459
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	114, 126, 392
MboI	GATC	3 cut(s)	112, 124, 390
MboII	GAAGA	2 cut(s)	62, 168
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	231, 359, 506
MnlI	CCTC	7 cut(s)	95, 219, 236, 289, 453, 542, 561
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	4 cut(s)	22, 204, 245, 495
MvaI	CCWGG	3 cut(s)	204, 245, 495
MwoI	GCNNNNNNNGC	4 cut(s)	74, 198, 325, 350
NciI	CCSGG	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	112, 124, 390
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	4 cut(s)	197, 224, 320, 376
NmeAIII	GCCGAG	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	454, 540
PkrI	GCNGC	7 cut(s)	43, 76, 79, 97, 167, 200, 327
Psp6I	CCWGG	3 cut(s)	202, 243, 493
PspGI	CCWGG	3 cut(s)	202, 243, 493
PspN4I	GGNNCC	4 cut(s)	197, 224, 320, 376
PspPI	GGNCC	3 cut(s)	104, 206, 318
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	7 cut(s)	42, 75, 78, 96, 166, 199, 326
Sau3AI	GATC	3 cut(s)	112, 124, 390
Sau96I	GGNCC	3 cut(s)	104, 206, 318
ScrFI	CCNGG	4 cut(s)	22, 204, 245, 495
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	61, 517
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	3 cut(s)	231, 359, 506
SsiI	CCGC	4 cut(s)	192, 199, 326, 378
SspMI	CTAG	2 cut(s)	305, 459
StyD4I	CCNGG	4 cut(s)	20, 202, 243, 493
StyI	CCWWGG	3 cut(s)	81, 314, 458
TaaI	ACNGT	1 cut(s)	412
TasI	AATT	3 cut(s)	231, 359, 506
TauI	GCSGC	2 cut(s)	201, 328
TfiI	GAWTC	2 cut(s)	454, 540
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	114, 415, 505
TseI	GCWGC	5 cut(s)	41, 74, 77, 95, 165
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	114, 415, 505
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	359, 506
XmaJI	CCTAGG	1 cut(s)	458
XspI	CTAG	2 cut(s)	305, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.