Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

3012036 .. 3014903

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCCATGGCTTCTCTGAGCTGTCTTCCTCACTCTCTGCCCGTTGTCTCTCATTCTTCACCTTCCTCTTCTTCTACAAAATATCTTATTCCGAGCAACCCTCCCTACCCAAAACGTCTTCGTTTTGATTCGAGAAAGAGCAAGTACAGCAAAAGCTTTGCTCTGAGAGCGGCTTTGGAGGAGGTATCTGTTCTTGACCCAGCTCCTCCTTCGTCTTCTGGAAGTAAGGGCAAACCCAACCCTGAGCTCGTAGCGTCTTTGAAGCTCAAGTTATTGAGTGCTGTTTCTGGGCTAAATAGAGGTCTTGCAGCTTCTGAAGATGATCTACGAAAGGCAGATACTGCTGCCAAGGAGATTGAAGCTGCTGGAGGTCCAGTGGATCTCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAACTGATATATAGTAGTGCATTTTCTTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACTGGAAGGCTACTCCCAATTACTCTAGGCCAGGTATTTCAACGAATTGATATCTTCAGCAAAGACTTTGATAACATAGTGGAGCTTGAACTAGGTGCTCCATGGCCCCTGCCGCCTGTTGAAGCAACTGCCACGTTAGCCCACAAATTTGAACTCATAGGATATGCAAGGGTTAAGATCGTATTTGAGAAAACTACCGTGAAGACAACAGGAAACTTATCGCAACTTCCTCTATTGGAGTTACCAAAGTTACCAGACGGACTAAGACCTCCATCTAACCCAGGAAGTGGTGAGTTTGACGTTACTTACCTTGATGCTGACATCCGCATCACCAGAGGAGATCGAGACGAGCTGAGGGTTTTTGTGGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

285

Amino Acids

30.63

Weight (kDa)

9.19

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	3 cut(s)	170, 593, 805
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	2 cut(s)	336, 520
AfaI	GTAC	2 cut(s)	146, 451
AfiI	CCNNNNNNNGG	3 cut(s)	482, 486, 767
AgsI	TTSAA	6 cut(s)	262, 359, 521, 569, 602, 632
AjnI	CCWGG	3 cut(s)	469, 510, 760
AluBI	AGCT	9 cut(s)	21, 156, 203, 247, 265, 311, 362, 565, 832
AluI	AGCT	9 cut(s)	21, 156, 203, 247, 265, 311, 362, 565, 832
Alw21I	GWGCWC	2 cut(s)	249, 580
Alw26I	GTCTC	2 cut(s)	52, 819
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	2 cut(s)	314, 341
AoxI	GGCC	3 cut(s)	3, 508, 584
ApeKI	GCWGC	3 cut(s)	308, 344, 362
ApoI	RAATTY	1 cut(s)	626
AspS9I	GGNCC	3 cut(s)	371, 473, 585
AsuHPI	GGTGA	3 cut(s)	51, 782, 802
AvaII	GGWCC	2 cut(s)	371, 473
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	4 cut(s)	17, 110, 207, 689
Bbv12I	GWGCWC	2 cut(s)	249, 580
BbvCI	CCTCAGC	1 cut(s)	833
BbvI	GCAGC	3 cut(s)	320, 331, 349
BccI	CCATC	2 cut(s)	408, 760
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	3 cut(s)	471, 512, 762
BcoDI	GTCTC	2 cut(s)	52, 819
BfaI	CTAG	3 cut(s)	455, 506, 572
BisI	GCNGC	5 cut(s)	171, 309, 345, 363, 593
BlsI	GCNGC	5 cut(s)	172, 310, 346, 364, 594
Bme1390I	CCNGG	3 cut(s)	471, 512, 762
Bme18I	GGWCC	2 cut(s)	371, 473
BmgT120I	GGNCC	3 cut(s)	371, 473, 585
BmiI	GGNNCC	2 cut(s)	464, 587
BmrFI	CCNGG	3 cut(s)	471, 512, 762
BmsI	GCATC	2 cut(s)	784, 816
BpiI	GAAGAC	4 cut(s)	17, 110, 207, 689
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	2 cut(s)	243, 833
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	4 cut(s)	6, 348, 581, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 486, 767
Bse1I	ACTGG	2 cut(s)	374, 487
BseBI	CCWGG	3 cut(s)	471, 512, 762
BseDI	CCNNGG	4 cut(s)	6, 348, 581, 760
BseGI	GGATG	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	482, 486, 767
BseMII	CTCAG	4 cut(s)	8, 155, 234, 824
BseNI	ACTGG	2 cut(s)	374, 487
BseRI	GAGGAG	3 cut(s)	194, 195, 831
BseXI	GCAGC	3 cut(s)	320, 331, 349
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	5, 510, 586
BsiHKAI	GWGCWC	2 cut(s)	249, 580
BslI	CCNNNNNNNGG	3 cut(s)	482, 486, 767
BsmAI	GTCTC	2 cut(s)	52, 819
BsmBI	CGTCTC	1 cut(s)	819
BsnI	GGCC	3 cut(s)	5, 510, 586
Bsp1286I	GDGCHC	2 cut(s)	249, 580
Bsp143I	GATC	5 cut(s)	322, 379, 391, 657, 820
Bsp19I	CCATGG	2 cut(s)	6, 581
BspACI	CCGC	3 cut(s)	170, 593, 805
BspANI	GGCC	3 cut(s)	5, 510, 586
BspCNI	CTCAG	4 cut(s)	9, 156, 235, 825
BspLI	GGNNCC	2 cut(s)	464, 587
BspPI	GGATC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	374, 487
BssECI	CCNNGG	4 cut(s)	6, 348, 581, 760
BssMI	GATC	5 cut(s)	322, 379, 391, 657, 820
BssT1I	CCWWGG	3 cut(s)	6, 348, 581
Bst2UI	CCWGG	3 cut(s)	471, 512, 762
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	5 cut(s)	17, 164, 243, 743, 833
BstDSI	CCRYGG	2 cut(s)	6, 581
BstF5I	GGATG	1 cut(s)	801
BstKTI	GATC	5 cut(s)	325, 382, 394, 660, 823
BstMAI	GTCTC	2 cut(s)	52, 819
BstMBI	GATC	5 cut(s)	322, 379, 391, 657, 820
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 167, 341, 592, 617
BstNI	CCWGG	3 cut(s)	471, 512, 762
BstSCI	CCNGG	3 cut(s)	469, 510, 760
BstV1I	GCAGC	3 cut(s)	320, 331, 349
BstV2I	GAAGAC	4 cut(s)	17, 110, 207, 689
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	5, 510, 586
BtgI	CCRYGG	2 cut(s)	6, 581
BtsCI	GGATG	1 cut(s)	801
BtsIMutI	CAGTG	2 cut(s)	381, 480
CaiI	CAGNNNCTG	2 cut(s)	314, 341
Cfr13I	GGNCC	3 cut(s)	371, 473, 585
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	145, 450
CviAII	CATG	2 cut(s)	7, 582
CviQI	GTAC	2 cut(s)	145, 450
DdeI	CTNAG	5 cut(s)	17, 164, 243, 743, 833
DpnI	GATC	5 cut(s)	324, 381, 393, 659, 822
DpnII	GATC	5 cut(s)	322, 379, 391, 657, 820
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	6, 348, 581
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	371, 473
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	336, 520
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	469, 510, 760
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	3 cut(s)	6, 348, 581
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	3 cut(s)	6, 348, 581
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	2 cut(s)	10, 585
FaiI	YATR	8 cut(s)	8, 427, 429, 557, 583, 638, 645, 853
FatI	CATG	2 cut(s)	6, 581
Fnu4HI	GCNGC	5 cut(s)	171, 309, 345, 363, 593
FokI	GGATG	1 cut(s)	788
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	171, 309, 345, 363, 593
FspBI	CTAG	3 cut(s)	455, 506, 572
GluI	GCNGC	5 cut(s)	171, 309, 345, 363, 593
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	5, 510, 586
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	10, 585
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	3 cut(s)	51, 782, 802
Hpy188I	TCNGA	4 cut(s)	18, 93, 165, 316
Hpy188III	TCNNGA	5 cut(s)	132, 194, 219, 395, 824
HpyAV	CCTTC	3 cut(s)	72, 219, 480
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	3 cut(s)	115, 614, 780
HpyCH4V	TGCA	4 cut(s)	308, 406, 437, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 167, 341, 592, 617
HpyF3I	CTNAG	5 cut(s)	17, 164, 243, 743, 833
HpySE526I	ACGT	3 cut(s)	115, 614, 780
Hsp92II	CATG	2 cut(s)	10, 585
Kzo9I	GATC	5 cut(s)	322, 379, 391, 657, 820
LmnI	GCTCC	4 cut(s)	208, 462, 562, 583
Lsp1109I	GCAGC	3 cut(s)	320, 331, 349
LweI	GCATC	2 cut(s)	784, 816
MaeI	CTAG	3 cut(s)	455, 506, 572
MaeII	ACGT	3 cut(s)	115, 614, 780
MaeIII	GTNAC	3 cut(s)	720, 729, 781
MalI	GATC	5 cut(s)	324, 381, 393, 659, 822
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	5 cut(s)	322, 379, 391, 657, 820
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	249, 580
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	498, 525, 626
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	471, 512, 762
MvaI	CCWGG	3 cut(s)	471, 512, 762
MwoI	GCNNNNNNNGC	5 cut(s)	147, 167, 341, 592, 617
NcoI	CCATGG	2 cut(s)	6, 581
NdeII	GATC	5 cut(s)	322, 379, 391, 657, 820
NlaIII	CATG	2 cut(s)	10, 585
NlaIV	GGNNCC	2 cut(s)	464, 587
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	767
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	172, 310, 346, 364, 594
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	469, 510, 760
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	3 cut(s)	469, 510, 760
PspN4I	GGNNCC	2 cut(s)	464, 587
PspPI	GGNCC	3 cut(s)	371, 473, 585
PstNI	CAGNNNCTG	2 cut(s)	314, 341
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	2 cut(s)	146, 451
RsaNI	GTAC	2 cut(s)	145, 450
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	5 cut(s)	171, 309, 345, 363, 593
Sau3AI	GATC	5 cut(s)	322, 379, 391, 657, 820
Sau96I	GGNCC	3 cut(s)	371, 473, 585
ScrFI	CCNGG	3 cut(s)	471, 512, 762
SduI	GDGCHC	2 cut(s)	249, 580
SfaNI	GCATC	2 cut(s)	784, 816
SinI	GGWCC	2 cut(s)	371, 473
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	498, 525, 626
SsiI	CCGC	3 cut(s)	170, 593, 805
SspMI	CTAG	3 cut(s)	455, 506, 572
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	469, 510, 760
StyI	CCWWGG	3 cut(s)	6, 348, 581
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	3 cut(s)	118, 617, 783
TaqI	TCGA	2 cut(s)	131, 823
TasI	AATT	3 cut(s)	498, 525, 626
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	2 cut(s)	173, 595
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	2 cut(s)	381, 487
TseI	GCWGC	3 cut(s)	308, 344, 362
TspDTI	ATGAA	1 cut(s)	840
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	2 cut(s)	381, 487
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	371, 473
XapI	RAATTY	1 cut(s)	626
XspI	CTAG	3 cut(s)	455, 506, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.