Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8159986.1

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 468

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8159986.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

agtgctgttgccgggctaaataatggtcttgcagcgagtgaagatgatatacgaaaggcagactctgctgccaaggagcttgaagctgctggaggcccagtggatctctcaaatgatcttgataaactgcaagggagatggaaactggtatatagcagtgcattttcttctcgcactcttggcgggagccgtcctgggcctcccattggaaggctcctcccaattactctcggccaggtatggtcccaaacctataatatcttgaaaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

90

Amino Acids

9.45

Weight (kDa)

8.03

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	206, 210
AgsI	TTSAA	2 cut(s)	83, 265
AjnI	CCWGG	2 cut(s)	193, 234
AluBI	AGCT	2 cut(s)	79, 86
AluI	AGCT	2 cut(s)	79, 86
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	94, 197, 232
ApeKI	GCWGC	3 cut(s)	32, 68, 86
AspS9I	GGNCC	3 cut(s)	95, 197, 243
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	243
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BbvI	GCAGC	3 cut(s)	44, 55, 73
BccI	CCATC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	2 cut(s)	195, 236
BcnI	CCSGG	1 cut(s)	13
BisI	GCNGC	3 cut(s)	33, 69, 87
BlsI	GCNGC	3 cut(s)	34, 70, 88
Bme1390I	CCNGG	3 cut(s)	13, 195, 236
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	95, 197, 243
BmiI	GGNNCC	3 cut(s)	188, 215, 245
BmrFI	CCNGG	3 cut(s)	13, 195, 236
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	72, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 210
Bse1I	ACTGG	2 cut(s)	98, 150
BseBI	CCWGG	2 cut(s)	195, 236
BseDI	CCNNGG	2 cut(s)	72, 194
BseLI	CCNNNNNNNGG	2 cut(s)	206, 210
BseNI	ACTGG	2 cut(s)	98, 150
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	44, 55, 73
BshFI	GGCC	3 cut(s)	96, 199, 234
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	206, 210
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	96, 199, 234
Bsp143I	GATC	2 cut(s)	103, 115
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	3 cut(s)	96, 199, 234
BspLI	GGNNCC	3 cut(s)	188, 215, 245
BspPI	GGATC	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	98, 150
BssECI	CCNNGG	2 cut(s)	72, 194
BssMI	GATC	2 cut(s)	103, 115
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	195, 236
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	106, 118
BstMBI	GATC	2 cut(s)	103, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 180
BstNI	CCWGG	2 cut(s)	195, 236
BstSCI	CCNGG	3 cut(s)	11, 193, 234
BstV1I	GCAGC	3 cut(s)	44, 55, 73
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	96, 199, 234
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	105, 163
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	95, 197, 243
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	8 cut(s)	16, 79, 86, 96, 189, 199, 214, 234
CviKI_1	RGCY	8 cut(s)	16, 79, 86, 96, 189, 199, 214, 234
DpnI	GATC	2 cut(s)	105, 117
DpnII	GATC	2 cut(s)	103, 115
EaeI	YGGCCR	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	193, 234
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	273
FaiI	YATR	6 cut(s)	50, 151, 153, 241, 255, 271
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	269
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	3 cut(s)	33, 69, 87
Fsp4HI	GCNGC	3 cut(s)	33, 69, 87
GluI	GCNGC	3 cut(s)	33, 69, 87
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	96, 199, 234
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	273
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	119, 262
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	32, 130, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 180
Hsp92II	CATG	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	103, 115
LmnI	GCTCC	3 cut(s)	76, 186, 219
LpnPI	CCDG	8 cut(s)	25, 75, 111, 131, 180, 207, 221, 248
Lsp1109I	GCAGC	3 cut(s)	44, 55, 73
MalI	GATC	2 cut(s)	105, 117
MboI	GATC	2 cut(s)	103, 115
MboII	GAAGA	2 cut(s)	53, 159
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	3 cut(s)	86, 210, 227
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	13, 195, 236
MvaI	CCWGG	2 cut(s)	195, 236
MwoI	GCNNNNNNNGC	2 cut(s)	65, 180
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	103, 115
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	3 cut(s)	188, 215, 245
NmeAIII	GCCGAG	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	34, 70, 88
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	193, 234
PspGI	CCWGG	2 cut(s)	193, 234
PspN4I	GGNNCC	3 cut(s)	188, 215, 245
PspPI	GGNCC	3 cut(s)	95, 197, 243
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	103
SatI	GCNGC	3 cut(s)	33, 69, 87
Sau3AI	GATC	2 cut(s)	103, 115
Sau96I	GGNCC	3 cut(s)	95, 197, 243
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	13, 195, 236
SetI	ASST	4 cut(s)	81, 88, 240, 254
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	11, 193, 234
StyI	CCWWGG	1 cut(s)	72
TasI	AATT	1 cut(s)	222
TscAI	CASTG	2 cut(s)	105, 163
TseI	GCWGC	3 cut(s)	32, 68, 86
TspRI	CASTG	2 cut(s)	105, 163
VpaK11BI	GGWCC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.