Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8087231 .. 8091050

Gene Structure 3820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTTCTCTAACCTGTCTTCCTTGTACTCTACCCACTGTCTCTCCCTGTTCTTCTTCTTCTTCTTCTTGCACCACGTGTCTTGTTGCGGGCAACCCAAAACGAGGTCGTCTCGGTTTGAAGAACAGCCGCGGCAAACAAAGCTTTGCTCTGACTACTAGAGCTGCTGTTGACGGCGTCTCTTCTGCTGTGGACGATGTTTCTAGTGCGGCTAAAGGCGCCGTGGATGACGTCACGTCTCTGGGAAGATCGCCGTTAAAGCTCAAGTTATTGAGTGCTGTTGCCGGGCTAAATAATGGTCTTGCAGCGAGTGAAGATGATATACGAAAGGCAGACTCTGCTGCCAAGGAGCTTGAAGCTGCTGGAGGCCCAGTGGATCTCTCAAATGATCTTGATAAACTGCAAGGGAGATGGAAACTGGTATATAGCAGTGCATTTTCTTCTCGCACTCTTGGCGGGAGCCGTCCTGGGCCTCCCATTGGAAGGCTCCTCCCAATTACTCTCGGTCAGGTATTTCAACGGATTGACATCGTAAGCAAAGACTTTGATAACATAGTGGATCTTCAACTAGGTGCTCCATGGCCCCTGCCGCCTATTGATGTAACTGCCACTTTAGCCCACAAATTTGAACTCATAGGCACCGCAAGGGTTAAGATCAAATTCGACAAAACCACTGTAAAGACAACTGGAAGCTTATCACAACTTCCTCCATTAGAGATTCCTAGGATACCTGATGGACTAAGGCCATCATCTAACCCTGGCAGTGGTGAATTTGAAGTAACCTATGTTGATACCGATACCCGAATCACTAGAGGAGATAGAGATGAGCTAAGGGTTTTTGTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

283

Amino Acids

29.8

Weight (kDa)

8.8

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	86 - 280	3.9e-42	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	2 cut(s)	218, 638
AccII	CGCG	1 cut(s)	132
AciI	CCGC	7 cut(s)	89, 130, 132, 209, 456, 590, 642
AclWI	GGATC	2 cut(s)	384, 567
AcsI	RAATTY	3 cut(s)	623, 659, 770
AcvI	CACGTG	1 cut(s)	78
AcyI	GRCGYC	3 cut(s)	177, 219, 231
AdeI	CACNNNGTG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	4 cut(s)	104, 479, 483, 764
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	121, 356, 518, 566, 629, 776
AhdI	GACNNNNNGTC	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	466, 757
AluBI	AGCT	7 cut(s)	144, 164, 262, 352, 359, 693, 829
AluI	AGCT	7 cut(s)	144, 164, 262, 352, 359, 693, 829
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	4 cut(s)	46, 116, 184, 243
AlwI	GGATC	2 cut(s)	384, 567
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	4 cut(s)	367, 470, 581, 743
ApeKI	GCWGC	4 cut(s)	164, 305, 341, 359
ApoI	RAATTY	3 cut(s)	623, 659, 770
AspA2I	CCTAGG	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	368, 470, 582
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	779
AvrII	CCTAGG	1 cut(s)	722
BanI	GGYRCC	2 cut(s)	218, 638
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbrPI	CACGTG	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	4 cut(s)	151, 317, 328, 346
BccI	CCATC	3 cut(s)	405, 728, 754
BceAI	ACGGC	4 cut(s)	190, 206, 238, 447
BciT130I	CCWGG	2 cut(s)	468, 759
BciVI	GTATCC	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	4 cut(s)	46, 116, 184, 243
BfaI	CTAG	5 cut(s)	159, 204, 569, 723, 810
BfoI	RGCGCY	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	8 cut(s)	130, 133, 165, 210, 306, 342, 360, 590
BlnI	CCTAGG	1 cut(s)	722
BlsI	GCNGC	8 cut(s)	131, 134, 166, 211, 307, 343, 361, 591
Bme1390I	CCNGG	3 cut(s)	286, 468, 759
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	237
BmgT120I	GGNCC	3 cut(s)	368, 470, 582
BmiI	GGNNCC	5 cut(s)	220, 461, 488, 584, 640
BmrFI	CCNGG	3 cut(s)	286, 468, 759
BmrI	ACTGGG	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	527
BsaHI	GRCGYC	3 cut(s)	177, 219, 231
BsaJI	CCNNGG	7 cut(s)	130, 222, 345, 467, 578, 722, 757
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 357, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 479, 483, 764
Bse1I	ACTGG	3 cut(s)	371, 423, 691
Bse8I	GATNNNNATC	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	468, 759
BseDI	CCNNGG	7 cut(s)	130, 222, 345, 467, 578, 722, 757
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	527
BseLI	CCNNNNNNNGG	4 cut(s)	104, 479, 483, 764
BseNI	ACTGG	3 cut(s)	371, 423, 691
BseRI	GAGGAG	2 cut(s)	479, 828
BseXI	GCAGC	4 cut(s)	151, 317, 328, 346
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	4 cut(s)	369, 472, 583, 745
BshNI	GGYRCC	2 cut(s)	218, 638
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	104, 479, 483, 764
BsmAI	GTCTC	4 cut(s)	46, 116, 184, 243
BsmBI	CGTCTC	3 cut(s)	116, 184, 243
BsnI	GGCC	4 cut(s)	369, 472, 583, 745
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	5 cut(s)	248, 376, 388, 559, 654
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	7 cut(s)	89, 130, 132, 209, 456, 590, 642
BspANI	GGCC	4 cut(s)	369, 472, 583, 745
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	5 cut(s)	220, 461, 488, 584, 640
BspPI	GGATC	2 cut(s)	384, 567
BspT107I	GGYRCC	2 cut(s)	218, 638
BsrI	ACTGG	3 cut(s)	371, 423, 691
BssECI	CCNNGG	7 cut(s)	130, 222, 345, 467, 578, 722, 757
BssMI	GATC	5 cut(s)	248, 376, 388, 559, 654
BssNI	GRCGYC	3 cut(s)	177, 219, 231
BssT1I	CCWWGG	3 cut(s)	345, 578, 722
Bst2UI	CCWGG	2 cut(s)	468, 759
Bst4CI	ACNGT	2 cut(s)	40, 676
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	3 cut(s)	177, 219, 231
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	740, 830
BstDSI	CCRYGG	3 cut(s)	130, 222, 578
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	5 cut(s)	251, 379, 391, 562, 657
BstMAI	GTCTC	4 cut(s)	46, 116, 184, 243
BstMBI	GATC	5 cut(s)	248, 376, 388, 559, 654
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 218, 259, 338, 453, 589, 614
BstNI	CCWGG	2 cut(s)	468, 759
BstSCI	CCNGG	3 cut(s)	284, 466, 757
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	151, 317, 328, 346
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	376, 559
BstYI	RGATCY	2 cut(s)	376, 559
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	4 cut(s)	369, 472, 583, 745
BtgI	CCRYGG	3 cut(s)	130, 222, 578
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	2 cut(s)	436, 769
BtsIMutI	CAGTG	5 cut(s)	36, 378, 436, 672, 769
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	368, 470, 582
Cfr42I	CCGCGG	1 cut(s)	133
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	579
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	740, 830
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	5 cut(s)	250, 378, 390, 561, 656
DpnII	GATC	5 cut(s)	248, 376, 388, 559, 654
DraIII	CACNNNGTG	1 cut(s)	78
DriI	GACNNNNNGTC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	345, 578, 722
Eco72I	CACGTG	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	466, 757
EcoT14I	CCWWGG	3 cut(s)	345, 578, 722
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	3 cut(s)	345, 578, 722
Esp3I	CGTCTC	3 cut(s)	116, 184, 243
FaeI	CATG	1 cut(s)	582
FaiI	YATR	7 cut(s)	323, 424, 426, 554, 580, 635, 786
FatI	CATG	1 cut(s)	578
FauI	CCCGC	2 cut(s)	82, 449
Fnu4HI	GCNGC	8 cut(s)	130, 133, 165, 210, 306, 342, 360, 590
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	8 cut(s)	130, 133, 165, 210, 306, 342, 360, 590
FspBI	CTAG	5 cut(s)	159, 204, 569, 723, 810
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	8 cut(s)	130, 133, 165, 210, 306, 342, 360, 590
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	4 cut(s)	369, 472, 583, 745
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	3 cut(s)	177, 219, 231
Hin1II	CATG	1 cut(s)	582
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	142, 691
HinfI	GANTC	3 cut(s)	335, 718, 804
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	2 cut(s)	172, 193
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	172, 193
HpyAV	CCTTC	1 cut(s)	477
HpyCH4III	ACNGT	2 cut(s)	40, 676
HpyCH4IV	ACGT	3 cut(s)	77, 231, 236
HpyCH4V	TGCA	4 cut(s)	72, 305, 403, 434
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 218, 259, 338, 453, 589, 614
HpyF3I	CTNAG	2 cut(s)	740, 830
HpySE526I	ACGT	3 cut(s)	77, 231, 236
Hsp92I	GRCGYC	3 cut(s)	177, 219, 231
Hsp92II	CATG	1 cut(s)	582
HspAI	GCGC	1 cut(s)	219
KasI	GGCGCC	1 cut(s)	218
KspI	CCGCGG	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	248, 376, 388, 559, 654
LmnI	GCTCC	4 cut(s)	349, 459, 492, 580
Lsp1109I	GCAGC	4 cut(s)	151, 317, 328, 346
MaeI	CTAG	5 cut(s)	159, 204, 569, 723, 810
MaeII	ACGT	3 cut(s)	77, 231, 236
MaeIII	GTNAC	3 cut(s)	232, 601, 778
MalI	GATC	5 cut(s)	250, 378, 390, 561, 656
MboI	GATC	5 cut(s)	248, 376, 388, 559, 654
MflI	RGATCY	2 cut(s)	376, 559
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	4 cut(s)	495, 623, 659, 770
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	6 cut(s)	98, 359, 483, 500, 717, 806
MseI	TTAA	2 cut(s)	257, 651
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	286, 468, 759
MvaI	CCWGG	2 cut(s)	468, 759
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	7 cut(s)	141, 218, 259, 338, 453, 589, 614
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	5 cut(s)	248, 376, 388, 559, 654
NlaIII	CATG	1 cut(s)	582
NlaIV	GGNNCC	5 cut(s)	220, 461, 488, 584, 640
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	718, 804
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	8 cut(s)	131, 134, 166, 211, 307, 343, 361, 591
PleI	GAGTC	1 cut(s)	329
PluTI	GGCGCC	1 cut(s)	222
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	466, 757
PspCI	CACGTG	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	466, 757
PspN4I	GGNNCC	5 cut(s)	220, 461, 488, 584, 640
PspPI	GGNCC	3 cut(s)	368, 470, 582
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	376, 559
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SacII	CCGCGG	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	257, 651
SatI	GCNGC	8 cut(s)	130, 133, 165, 210, 306, 342, 360, 590
Sau3AI	GATC	5 cut(s)	248, 376, 388, 559, 654
Sau96I	GGNCC	3 cut(s)	368, 470, 582
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	286, 468, 759
SduI	GDGCHC	1 cut(s)	577
SfoI	GGCGCC	1 cut(s)	220
Sfr303I	CCGCGG	1 cut(s)	133
SgrBI	CCGCGG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	495, 623, 659, 770
SsiI	CCGC	7 cut(s)	89, 130, 132, 209, 456, 590, 642
SspDI	GGCGCC	1 cut(s)	218
SspMI	CTAG	5 cut(s)	159, 204, 569, 723, 810
StyD4I	CCNGG	3 cut(s)	284, 466, 757
StyI	CCWWGG	3 cut(s)	345, 578, 722
TaaI	ACNGT	2 cut(s)	40, 676
TaiI	ACGT	3 cut(s)	80, 234, 239
TaqI	TCGA	1 cut(s)	663
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	4 cut(s)	495, 623, 659, 770
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	4 cut(s)	132, 135, 212, 592
TfiI	GAWTC	2 cut(s)	718, 804
Tru1I	TTAA	2 cut(s)	257, 651
Tru9I	TTAA	2 cut(s)	257, 651
TscAI	CASTG	5 cut(s)	43, 378, 436, 679, 769
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	164, 305, 341, 359
Tsp45I	GTSAC	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	5 cut(s)	43, 378, 436, 679, 769
Tth111I	GACNNNGTC	1 cut(s)	176
XapI	RAATTY	3 cut(s)	623, 659, 770
XmaJI	CCTAGG	1 cut(s)	722
XspI	CTAG	5 cut(s)	159, 204, 569, 723, 810
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.