Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

15020479 .. 15023453

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAATTTGAACCTCCAATTGTCCCACAACCGACAAACATGTAACTCCCTAAAAAGCCAAGACCTTTGCTTTCTAGCCATGGCCATGGCTTCTCCGAGCTCTCTCCCTCACTCTCTACATTCTTCGCCTTCTACTTCTTCTGCAAACTATGTTCTTCTAAGCAAACCACCCTCCCCAAAACGCCTCCGTTTTGGTTCGGCAAATCCCCGTCACACCAAAAGCTTTGCTCTGAGAGCAGCTGCGGACGAGGTCTCTTTTGTCGAGCCGCCGCCGCCACCTCCGCCGTCTTCCGGAAGTAAACCCGCGCCCAACCCTGAACTCTTAGCGTCTTTGAAGCTCAAGTTATTGAGTGCTGTTTCTGGGTTAAATAGAGGCCTTGCAGCATTGCGAGAGGATCTACAAAAGGCAGATGCTGCTGCCAAGGAGATTGAAGCTGCTGGAGGTCCAGTGGATCTCTCAGCTGATCTTGATAAACTGCAGGGGAGATGGAAACTGATATATAGCAGTGCATTTTCTTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACTGGAAGGCTACTCCCGATTACTTTAGGCCAGGTATTTCAACGGATTGACATCTTCAGCAAAGACTTTGATAACATAGTGGAGCTTGAACTAGGTGTTCCATGGCCCCTGCCTCCTGTTGACGCAACTGCCACTTTGGCCCACAAATTTGAGCTCATAGGATCTGCCAGGGTTAAAATTGTATTCGAGAAAACTACTGTAAAGACTACTGGAAACTTTTCGCAACTTCCTCCATTAGAGTTACCTCAGTTACCAGAAGGACTAAGACCCCCGTCTAACCGAGGAAGTGGTGAATTTGACGTTACCTACCTTGACGCAGATACCCGCATCACCAGAGGAGATAGAGACGAGCTGAGGGTATTTGTGATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

309

Amino Acids

33.2

Weight (kDa)

9.22

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	110 - 305	3.5e-43	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	305
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	7 cut(s)	242, 266, 269, 272, 281, 303, 877
AclWI	GGATC	3 cut(s)	402, 459, 721
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	4, 698, 845
AcuI	CTGAAG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	3 cut(s)	290, 554, 558
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	5 cut(s)	10, 334, 431, 593, 641
AjnI	CCWGG	3 cut(s)	541, 582, 719
AluBI	AGCT	9 cut(s)	99, 222, 239, 337, 434, 461, 637, 706, 904
AluI	AGCT	9 cut(s)	99, 222, 239, 337, 434, 461, 637, 706, 904
Alw21I	GWGCWC	2 cut(s)	101, 708
Alw26I	GTCTC	2 cut(s)	256, 891
AlwI	GGATC	3 cut(s)	402, 459, 721
AlwNI	CAGNNNCTG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	5 cut(s)	81, 373, 580, 656, 690
ApeKI	GCWGC	6 cut(s)	236, 239, 380, 413, 416, 434
ApoI	RAATTY	3 cut(s)	4, 698, 845
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	4 cut(s)	443, 545, 657, 691
AsuHPI	GGTGA	2 cut(s)	854, 874
AvaII	GGWCC	2 cut(s)	443, 545
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	101, 708
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	101, 708
BbvCI	CCTCAGC	1 cut(s)	905
BbvI	GCAGC	6 cut(s)	226, 248, 392, 400, 403, 421
BccI	CCATC	1 cut(s)	480
BceAI	ACGGC	2 cut(s)	268, 522
BciT130I	CCWGG	3 cut(s)	543, 584, 721
BcoDI	GTCTC	2 cut(s)	256, 891
BfaI	CTAG	3 cut(s)	74, 527, 644
BfmI	CTRYAG	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	689
BisI	GCNGC	9 cut(s)	237, 240, 266, 269, 272, 381, 414, 417, 435
BlsI	GCNGC	9 cut(s)	238, 241, 267, 270, 273, 382, 415, 418, 436
Bme1390I	CCNGG	3 cut(s)	543, 584, 721
Bme18I	GGWCC	2 cut(s)	443, 545
BmgT120I	GGNCC	4 cut(s)	443, 545, 657, 691
BmiI	GGNNCC	2 cut(s)	536, 659
BmrFI	CCNGG	3 cut(s)	543, 584, 721
BmsI	GCATC	2 cut(s)	400, 888
BoxI	GACNNNNGTC	1 cut(s)	823
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	6 cut(s)	78, 84, 420, 653, 720, 832
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 554, 558
Bse1I	ACTGG	3 cut(s)	446, 559, 766
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	602
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	3 cut(s)	543, 584, 721
BseDI	CCNNGG	6 cut(s)	78, 84, 420, 653, 720, 832
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	290, 554, 558
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	4 cut(s)	221, 471, 812, 896
BseNI	ACTGG	3 cut(s)	446, 559, 766
BseRI	GAGGAG	1 cut(s)	903
BseXI	GCAGC	6 cut(s)	226, 248, 392, 400, 403, 421
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	5 cut(s)	83, 375, 582, 658, 692
BsiHKAI	GWGCWC	2 cut(s)	101, 708
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	3 cut(s)	290, 554, 558
BsmAI	GTCTC	2 cut(s)	256, 891
BsmBI	CGTCTC	1 cut(s)	891
BsmFI	GGGAC	1 cut(s)	7
BsnI	GGCC	5 cut(s)	83, 375, 582, 658, 692
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	101, 708
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	394, 451, 463, 713
Bsp19I	CCATGG	3 cut(s)	78, 84, 653
BspACI	CCGC	7 cut(s)	242, 266, 269, 272, 281, 303, 877
BspANI	GGCC	5 cut(s)	83, 375, 582, 658, 692
BspCNI	CTCAG	4 cut(s)	222, 470, 811, 897
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	536, 659
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	3 cut(s)	402, 459, 721
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	3 cut(s)	446, 559, 766
BssECI	CCNNGG	6 cut(s)	78, 84, 420, 653, 720, 832
BssMI	GATC	4 cut(s)	394, 451, 463, 713
BssT1I	CCWWGG	4 cut(s)	78, 84, 420, 653
Bst2UI	CCWGG	3 cut(s)	543, 584, 721
Bst4CI	ACNGT	1 cut(s)	751
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	7 cut(s)	158, 230, 322, 457, 798, 815, 905
BstDSI	CCRYGG	3 cut(s)	78, 84, 653
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	4 cut(s)	397, 454, 466, 716
BstMAI	GTCTC	2 cut(s)	256, 891
BstMBI	GATC	4 cut(s)	394, 451, 463, 713
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 271, 280, 413, 689
BstNI	CCWGG	3 cut(s)	543, 584, 721
BstNSI	RCATGY	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	823
BstSCI	CCNGG	3 cut(s)	541, 582, 719
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	6 cut(s)	226, 248, 392, 400, 403, 421
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	3 cut(s)	394, 451, 713
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	3 cut(s)	394, 451, 713
BsuRI	GGCC	5 cut(s)	83, 375, 582, 658, 692
BtgI	CCRYGG	3 cut(s)	78, 84, 653
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	3 cut(s)	453, 511, 552
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	4 cut(s)	443, 545, 657, 691
CseI	GACGC	3 cut(s)	315, 683, 875
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	4 cut(s)	39, 79, 85, 654
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	7 cut(s)	158, 230, 322, 457, 798, 815, 905
DpnI	GATC	4 cut(s)	396, 453, 465, 715
DpnII	GATC	4 cut(s)	394, 451, 463, 713
EaeI	YGGCCR	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	270
Ecl136II	GAGCTC	2 cut(s)	99, 706
Eco130I	CCWWGG	4 cut(s)	78, 84, 420, 653
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	101, 708
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	443, 545
Eco53kI	GAGCTC	2 cut(s)	99, 706
Eco57I	CTGAAG	1 cut(s)	592
EcoICRI	GAGCTC	2 cut(s)	99, 706
EcoRII	CCWGG	3 cut(s)	541, 582, 719
EcoT14I	CCWWGG	4 cut(s)	78, 84, 420, 653
EcoT38I	GRGCYC	2 cut(s)	101, 708
ErhI	CCWWGG	4 cut(s)	78, 84, 420, 653
Esp3I	CGTCTC	1 cut(s)	891
FaeI	CATG	4 cut(s)	42, 82, 88, 657
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	38, 78, 84, 653
FauI	CCCGC	2 cut(s)	310, 884
Fnu4HI	GCNGC	9 cut(s)	237, 240, 266, 269, 272, 381, 414, 417, 435
FriOI	GRGCYC	2 cut(s)	101, 708
Fsp4HI	GCNGC	9 cut(s)	237, 240, 266, 269, 272, 381, 414, 417, 435
FspBI	CTAG	3 cut(s)	74, 527, 644
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	9 cut(s)	237, 240, 266, 269, 272, 381, 414, 417, 435
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	5 cut(s)	83, 375, 582, 658, 692
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	3 cut(s)	315, 683, 875
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	42, 82, 88, 657
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	220
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	854, 874
Hpy166II	GTNNAC	2 cut(s)	299, 673
Hpy188I	TCNGA	2 cut(s)	96, 231
Hpy188III	TCNNGA	4 cut(s)	291, 467, 568, 739
Hpy8I	GTNNAC	2 cut(s)	299, 673
HpyAV	CCTTC	3 cut(s)	138, 552, 803
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	4 cut(s)	143, 380, 478, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 271, 280, 413, 689
HpyF3I	CTNAG	7 cut(s)	158, 230, 322, 457, 798, 815, 905
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	4 cut(s)	42, 82, 88, 657
HspAI	GCGC	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	290
Kzo9I	GATC	4 cut(s)	394, 451, 463, 713
LmnI	GCTCC	2 cut(s)	534, 634
Lsp1109I	GCAGC	6 cut(s)	226, 248, 392, 400, 403, 421
LweI	GCATC	2 cut(s)	400, 888
MaeI	CTAG	3 cut(s)	74, 527, 644
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	5 cut(s)	41, 209, 792, 801, 853
MalI	GATC	4 cut(s)	396, 453, 465, 715
MboI	GATC	4 cut(s)	394, 451, 463, 713
MboII	GAAGA	6 cut(s)	114, 129, 146, 279, 507, 598
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	3 cut(s)	394, 451, 713
MhlI	GDGCHC	2 cut(s)	101, 708
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	5 cut(s)	4, 17, 698, 729, 845
MluNI	TGGCCA	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	769
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	365, 726
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	239, 461
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	543, 584, 721
MunI	CAATTG	1 cut(s)	17
MvaI	CCWGG	3 cut(s)	543, 584, 721
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	233, 271, 280, 413, 689
NcoI	CCATGG	3 cut(s)	78, 84, 653
NdeII	GATC	4 cut(s)	394, 451, 463, 713
NlaIII	CATG	4 cut(s)	42, 82, 88, 657
NlaIV	GGNNCC	2 cut(s)	536, 659
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	375
PciI	ACATGT	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	769
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	9 cut(s)	238, 241, 267, 270, 273, 382, 415, 418, 436
PscI	ACATGT	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	823
Psp124BI	GAGCTC	2 cut(s)	101, 708
Psp6I	CCWGG	3 cut(s)	541, 582, 719
PspGI	CCWGG	3 cut(s)	541, 582, 719
PspN4I	GGNNCC	2 cut(s)	536, 659
PspPI	GGNCC	4 cut(s)	443, 545, 657, 691
PstI	CTGCAG	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	3 cut(s)	394, 451, 713
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	2 cut(s)	239, 461
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	2 cut(s)	101, 708
SaqAI	TTAA	2 cut(s)	365, 726
SatI	GCNGC	9 cut(s)	237, 240, 266, 269, 272, 381, 414, 417, 435
Sau3AI	GATC	4 cut(s)	394, 451, 463, 713
Sau96I	GGNCC	4 cut(s)	443, 545, 657, 691
ScrFI	CCNGG	3 cut(s)	543, 584, 721
SduI	GDGCHC	2 cut(s)	101, 708
SfaNI	GCATC	2 cut(s)	400, 888
SfcI	CTRYAG	1 cut(s)	476
SinI	GGWCC	2 cut(s)	443, 545
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	4, 17, 698, 729, 845
SseBI	AGGCCT	1 cut(s)	375
SsiI	CCGC	7 cut(s)	242, 266, 269, 272, 281, 303, 877
SspMI	CTAG	3 cut(s)	74, 527, 644
SstI	GAGCTC	2 cut(s)	101, 708
StuI	AGGCCT	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	541, 582, 719
StyI	CCWWGG	4 cut(s)	78, 84, 420, 653
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	2 cut(s)	261, 738
TasI	AATT	5 cut(s)	4, 17, 698, 729, 845
TauI	GCSGC	3 cut(s)	268, 271, 274
Tru1I	TTAA	2 cut(s)	365, 726
Tru9I	TTAA	2 cut(s)	365, 726
TscAI	CASTG	3 cut(s)	453, 511, 559
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	6 cut(s)	236, 239, 380, 413, 416, 434
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	17, 912
TspGWI	ACGGA	2 cut(s)	176, 610
TspRI	CASTG	3 cut(s)	453, 511, 559
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	443, 545
XapI	RAATTY	3 cut(s)	4, 698, 845
XceI	RCATGY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	3 cut(s)	74, 527, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.