Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

7706964 .. 7710763

Gene Structure 3800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG048200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTTCTCTAACCTGTCTTCCTTGTACTCTACCCACTGTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTGCACCACGTGTCTTGTTGCGGGCAACCCAAAACGAGGTCGTTTCGGTTTGAAGAACAGCCACCGCAGACAAAGCTTTGCTCTGACTACTAGAGCTGCTGTTGACGGCGTCTCTGGTGCTGTGGACGATGTTTCTAGCGCGGCTAAAGGGGCCGTGGATGACGTCACGTCTCTGGGAAGATCGCCGTTAAAGCTCAAGTTATTGAGTGCTGTTGCCGGGCTAAATAATGGTCTTGCAGCGAGTGAAGATGATCTACGAAAGGCAGATGCTGCTGCCAAGGAGCTTGAAGCTGCTGGAGGCCCAGTGGATCTCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAACTGGTATATAGCAGTGCATTTTCTTCTCGTACTCTTGGCGGGAGCCGCCCTGGGCCTCCCATTGGAAGGCTCCTCCCAATTAGTCTCGGCCAGGTATTTCAACGGATTGACATCGTAAGCAAAGACTTTGATAACATAGTGGAGGTTCAACTAGGTGCTCCATGGCCCCTGCCGCCTATTGATGTAACTGCCACTTTAGCCCACAAATTTGAACTCATAGGCACCGCAAGGGTTAAGATCAAATTCGACAAAACCACTGTAAAGACAACTGGAAGCTTATCACAACTTCCTCCATTAGAGATTCCTAGGATACCTGATGGACTAAGGCCATCATCTAACCCTGGCAGTGGTGAATTTGAAGTAACCTATGTTGATACCGATACCCGAATCACTAGAGGAGATAGAGATGAGCTAAGGGTTTTTGTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

284

Amino Acids

29.93

Weight (kDa)

8.9

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	87 - 281	5.5e-42	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	641
AccII	CGCG	1 cut(s)	212
AciI	CCGC	7 cut(s)	92, 136, 212, 459, 466, 593, 645
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	626, 662, 773
AcvI	CACGTG	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	180, 234
AdeI	CACNNNGTG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	28, 451
AfiI	CCNNNNNNNGG	4 cut(s)	107, 482, 486, 767
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	6 cut(s)	124, 359, 521, 569, 632, 779
AhdI	GACNNNNNGTC	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	240
AjnI	CCWGG	3 cut(s)	469, 510, 760
AluBI	AGCT	7 cut(s)	147, 167, 265, 355, 362, 696, 832
AluI	AGCT	7 cut(s)	147, 167, 265, 355, 362, 696, 832
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	4 cut(s)	46, 187, 246, 509
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	6 cut(s)	222, 370, 473, 508, 584, 746
ApeKI	GCWGC	5 cut(s)	167, 308, 341, 344, 362
ApoI	RAATTY	3 cut(s)	626, 662, 773
AspA2I	CCTAGG	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	4 cut(s)	222, 371, 473, 585
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	782
AvrII	CCTAGG	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	641
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbrPI	CACGTG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	5 cut(s)	154, 320, 328, 331, 349
BccI	CCATC	3 cut(s)	408, 731, 757
BceAI	ACGGC	3 cut(s)	193, 209, 241
BciT130I	CCWGG	3 cut(s)	471, 512, 762
BciVI	GTATCC	1 cut(s)	723
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	4 cut(s)	46, 187, 246, 509
BfaI	CTAG	5 cut(s)	162, 207, 572, 726, 813
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	8 cut(s)	168, 213, 309, 342, 345, 363, 466, 593
BlnI	CCTAGG	1 cut(s)	725
BlsI	GCNGC	8 cut(s)	169, 214, 310, 343, 346, 364, 467, 594
Bme1390I	CCNGG	4 cut(s)	289, 471, 512, 762
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	4 cut(s)	222, 371, 473, 585
BmiI	GGNNCC	5 cut(s)	223, 464, 491, 587, 643
BmrFI	CCNGG	4 cut(s)	289, 471, 512, 762
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	2 cut(s)	180, 234
BsaJI	CCNNGG	7 cut(s)	225, 348, 469, 470, 581, 725, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 482, 486, 767
Bse1I	ACTGG	3 cut(s)	374, 426, 694
Bse8I	GATNNNNATC	1 cut(s)	530
BseBI	CCWGG	3 cut(s)	471, 512, 762
BseDI	CCNNGG	7 cut(s)	225, 348, 469, 470, 581, 725, 760
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	4 cut(s)	107, 482, 486, 767
BseNI	ACTGG	3 cut(s)	374, 426, 694
BseRI	GAGGAG	5 cut(s)	34, 37, 40, 482, 831
BseXI	GCAGC	5 cut(s)	154, 320, 328, 331, 349
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	6 cut(s)	224, 372, 475, 510, 586, 748
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	4 cut(s)	107, 482, 486, 767
BsmAI	GTCTC	4 cut(s)	46, 187, 246, 509
BsmBI	CGTCTC	2 cut(s)	187, 246
BsnI	GGCC	6 cut(s)	224, 372, 475, 510, 586, 748
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	5 cut(s)	251, 322, 379, 391, 657
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	7 cut(s)	92, 136, 212, 459, 466, 593, 645
BspANI	GGCC	6 cut(s)	224, 372, 475, 510, 586, 748
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	5 cut(s)	223, 464, 491, 587, 643
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	374, 426, 694
BssECI	CCNNGG	7 cut(s)	225, 348, 469, 470, 581, 725, 760
BssMI	GATC	5 cut(s)	251, 322, 379, 391, 657
BssNI	GRCGYC	2 cut(s)	180, 234
BssT1I	CCWWGG	3 cut(s)	348, 581, 725
Bst2UI	CCWGG	3 cut(s)	471, 512, 762
Bst4CI	ACNGT	2 cut(s)	40, 679
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	2 cut(s)	180, 234
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	743, 833
BstDSI	CCRYGG	2 cut(s)	225, 581
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	254, 325, 382, 394, 660
BstMAI	GTCTC	4 cut(s)	46, 187, 246, 509
BstMBI	GATC	5 cut(s)	251, 322, 379, 391, 657
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 221, 262, 341, 465, 592, 617
BstNI	CCWGG	3 cut(s)	471, 512, 762
BstSCI	CCNGG	4 cut(s)	287, 469, 510, 760
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	5 cut(s)	154, 320, 328, 331, 349
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	723
BsuRI	GGCC	6 cut(s)	224, 372, 475, 510, 586, 748
BtgI	CCRYGG	2 cut(s)	225, 581
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	2 cut(s)	439, 772
BtsIMutI	CAGTG	5 cut(s)	36, 381, 439, 675, 772
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	4 cut(s)	222, 371, 473, 585
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	27, 450
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	1 cut(s)	582
CviQI	GTAC	2 cut(s)	27, 450
DdeI	CTNAG	2 cut(s)	743, 833
DpnI	GATC	5 cut(s)	253, 324, 381, 393, 659
DpnII	GATC	5 cut(s)	251, 322, 379, 391, 657
DraIII	CACNNNGTG	1 cut(s)	81
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	58
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	3 cut(s)	348, 581, 725
Eco72I	CACGTG	1 cut(s)	81
EcoRII	CCWGG	3 cut(s)	469, 510, 760
EcoT14I	CCWWGG	3 cut(s)	348, 581, 725
ErhI	CCWWGG	3 cut(s)	348, 581, 725
Esp3I	CGTCTC	2 cut(s)	187, 246
FaeI	CATG	1 cut(s)	585
FaiI	YATR	6 cut(s)	427, 429, 557, 583, 638, 789
FatI	CATG	1 cut(s)	581
FauI	CCCGC	2 cut(s)	85, 452
Fnu4HI	GCNGC	8 cut(s)	168, 213, 309, 342, 345, 363, 466, 593
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	8 cut(s)	168, 213, 309, 342, 345, 363, 466, 593
FspBI	CTAG	5 cut(s)	162, 207, 572, 726, 813
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	8 cut(s)	168, 213, 309, 342, 345, 363, 466, 593
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	6 cut(s)	224, 372, 475, 510, 586, 748
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	2 cut(s)	180, 234
Hin1II	CATG	1 cut(s)	585
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	2 cut(s)	145, 694
HinfI	GANTC	2 cut(s)	721, 807
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	2 cut(s)	175, 196
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	2 cut(s)	175, 196
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	2 cut(s)	40, 679
HpyCH4IV	ACGT	3 cut(s)	80, 234, 239
HpyCH4V	TGCA	4 cut(s)	75, 308, 406, 437
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 221, 262, 341, 465, 592, 617
HpyF3I	CTNAG	2 cut(s)	743, 833
HpySE526I	ACGT	3 cut(s)	80, 234, 239
Hsp92I	GRCGYC	2 cut(s)	180, 234
Hsp92II	CATG	1 cut(s)	585
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	251, 322, 379, 391, 657
LmnI	GCTCC	4 cut(s)	352, 462, 495, 583
Lsp1109I	GCAGC	5 cut(s)	154, 320, 328, 331, 349
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	5 cut(s)	162, 207, 572, 726, 813
MaeII	ACGT	3 cut(s)	80, 234, 239
MaeIII	GTNAC	3 cut(s)	235, 604, 781
MalI	GATC	5 cut(s)	253, 324, 381, 393, 659
MboI	GATC	5 cut(s)	251, 322, 379, 391, 657
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	4 cut(s)	498, 626, 662, 773
MseI	TTAA	2 cut(s)	260, 654
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	289, 471, 512, 762
MvaI	CCWGG	3 cut(s)	471, 512, 762
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	7 cut(s)	144, 221, 262, 341, 465, 592, 617
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	5 cut(s)	251, 322, 379, 391, 657
NlaIII	CATG	1 cut(s)	585
NlaIV	GGNNCC	5 cut(s)	223, 464, 491, 587, 643
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	235
PasI	CCCWGGG	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	721, 807
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	8 cut(s)	169, 214, 310, 343, 346, 364, 467, 594
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	469, 510, 760
PspCI	CACGTG	1 cut(s)	81
PspGI	CCWGG	3 cut(s)	469, 510, 760
PspN4I	GGNNCC	5 cut(s)	223, 464, 491, 587, 643
PspPI	GGNCC	4 cut(s)	222, 371, 473, 585
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	28, 451
RsaNI	GTAC	2 cut(s)	27, 450
SaqAI	TTAA	2 cut(s)	260, 654
SatI	GCNGC	8 cut(s)	168, 213, 309, 342, 345, 363, 466, 593
Sau3AI	GATC	5 cut(s)	251, 322, 379, 391, 657
Sau96I	GGNCC	4 cut(s)	222, 371, 473, 585
ScrFI	CCNGG	4 cut(s)	289, 471, 512, 762
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	498, 626, 662, 773
SsiI	CCGC	7 cut(s)	92, 136, 212, 459, 466, 593, 645
SspMI	CTAG	5 cut(s)	162, 207, 572, 726, 813
StyD4I	CCNGG	4 cut(s)	287, 469, 510, 760
StyI	CCWWGG	3 cut(s)	348, 581, 725
TaaI	ACNGT	2 cut(s)	40, 679
TaiI	ACGT	3 cut(s)	83, 237, 242
TaqI	TCGA	1 cut(s)	666
TasI	AATT	4 cut(s)	498, 626, 662, 773
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	3 cut(s)	215, 468, 595
TfiI	GAWTC	2 cut(s)	721, 807
Tru1I	TTAA	2 cut(s)	260, 654
Tru9I	TTAA	2 cut(s)	260, 654
TscAI	CASTG	5 cut(s)	43, 381, 439, 682, 772
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	5 cut(s)	167, 308, 341, 344, 362
Tsp45I	GTSAC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	5 cut(s)	43, 381, 439, 682, 772
Tth111I	GACNNNGTC	1 cut(s)	179
XapI	RAATTY	3 cut(s)	626, 662, 773
XmaJI	CCTAGG	1 cut(s)	725
XspI	CTAG	5 cut(s)	162, 207, 572, 726, 813
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.