Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010381

Physical Location & Seq

Genomic Coordinates Reverse (-)

8702420 .. 8707237

Gene Structure 4818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG048500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTCTCTAACCTGTCTTCCTTATACTCTACCCACTGTCTCCCCCTCTTCTTCTTCTTCTTCTTGCACCACGTGTCTTGTTGCGGGCAACCCAAAACGAAGTCGTCTCGGTTTGAAGAACAGCCACCGCAGACAAAGCTTTGCTCTGACTACTAGAGCTGCTGTTGACGGCGTCTCTTCTGCTGTGGACGATGTTTCTAGTGCGGCTAAAGGCGCCGTGGATGACGTCACGTCTCTGGGAAGATCGCCGTTAAAGCTCAAGTTATTGAGTGCTGTTGCCGGGCTAAATAATGGTCTTGCAGCGAGTGAAGATGATCTACGAAAGGCAGATGCTGCTGCCAAGGAGCTTGAAGCTGCTGGAGGCCCAGTGGATCTCTCAACTGATCTTGATAAACTGCAAGGGAGATGGAAACTGGTATATAGCAGTGCATTTTCTTCTCGTACTCTTGGTGGGAGCCGCCCTGGGCCTCCCATTGGAAGGCTCCTCCCAATTACTCTCGGCCAGGTATTTCAACGGATTGACATCGTAAGCAAAGACTTTGATAACATAGTGGAGGTTCAACTAGGTGCTCCATGGCCCCTGCCGCCTATTGATGTAACTGCCACTTTAGCCCACAAATTTGAACTCATAGGTACTTGTGAACTCATGTCTCATTGTCTTTTTGATTCATATAACAACTCATGCACGTCGTACACAAATGAAGTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010035 GO:0010193 GO:0010287 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071840 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

237

Amino Acids

25.01

Weight (kDa)

6.89

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	85 - 214	1e-23	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23400 AT3G23400 AT3G23400 AT3G23400
malus_domestica	MD13G1216500.v1.1 MD16G1221800.v1.1
prunus_persica	Prupe.1G042200_v2.0.a1
pyrus_communis	pycom13g18990 pycom16g18600
rosa_chinensis	RchiOBHm_Chr4g0394281
rosa_laevigata	RLG00000009709
rosa_multiflora	Rmu_co8159986.1_g000001 Rmu_sc0007246.1_g000003 Rmu_ssc0000473.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339310
rosa_rugosa	Rorug03G0368100.1
rosa_samantha	Rh4AG051300 Rh4BG048500 Rh4CG055100 Rh4DG048200
rosa_wichuraiana	Rw4G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	215
AciI	CCGC	5 cut(s)	86, 130, 206, 460, 587
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	620
AcvI	CACGTG	1 cut(s)	75
AcyI	GRCGYC	3 cut(s)	174, 216, 228
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	3 cut(s)	445, 637, 695
AfiI	CCNNNNNNNGG	2 cut(s)	476, 480
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	118, 353, 515, 563, 626
AhdI	GACNNNNNGTC	1 cut(s)	232
AjiI	CACGTC	2 cut(s)	234, 690
AjnI	CCWGG	2 cut(s)	463, 504
AluBI	AGCT	5 cut(s)	141, 161, 259, 349, 356
AluI	AGCT	5 cut(s)	141, 161, 259, 349, 356
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	5 cut(s)	46, 113, 181, 240, 657
AlwI	GGATC	1 cut(s)	381
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	4 cut(s)	364, 467, 502, 578
ApeKI	GCWGC	5 cut(s)	161, 302, 335, 338, 356
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	365, 467, 579
AsuC2I	CCSGG	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BbrPI	CACGTG	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	5 cut(s)	148, 314, 322, 325, 343
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	3 cut(s)	187, 203, 235
BciT130I	CCWGG	2 cut(s)	465, 506
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	5 cut(s)	46, 113, 181, 240, 657
BfaI	CTAG	3 cut(s)	156, 201, 566
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	8 cut(s)	162, 207, 303, 336, 339, 357, 460, 587
BlsI	GCNGC	8 cut(s)	163, 208, 304, 337, 340, 358, 461, 588
Bme1390I	CCNGG	3 cut(s)	283, 465, 506
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgBI	CACGTC	2 cut(s)	234, 690
BmgT120I	GGNCC	3 cut(s)	365, 467, 579
BmiI	GGNNCC	4 cut(s)	217, 458, 485, 581
BmrFI	CCNGG	3 cut(s)	283, 465, 506
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	3 cut(s)	174, 216, 228
BsaJI	CCNNGG	5 cut(s)	219, 342, 463, 464, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 480
Bse1I	ACTGG	2 cut(s)	368, 420
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	465, 506
BseDI	CCNNGG	5 cut(s)	219, 342, 463, 464, 575
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	2 cut(s)	476, 480
BseNI	ACTGG	2 cut(s)	368, 420
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	5 cut(s)	148, 314, 322, 325, 343
BshFI	GGCC	4 cut(s)	366, 469, 504, 580
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	476, 480
BsmAI	GTCTC	5 cut(s)	46, 113, 181, 240, 657
BsmBI	CGTCTC	3 cut(s)	113, 181, 240
BsnI	GGCC	4 cut(s)	366, 469, 504, 580
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	245, 316, 373, 385
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	5 cut(s)	86, 130, 206, 460, 587
BspANI	GGCC	4 cut(s)	366, 469, 504, 580
BspLI	GGNNCC	4 cut(s)	217, 458, 485, 581
BspPI	GGATC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	368, 420
BssECI	CCNNGG	5 cut(s)	219, 342, 463, 464, 575
BssMI	GATC	4 cut(s)	245, 316, 373, 385
BssNI	GRCGYC	3 cut(s)	174, 216, 228
BssT1I	CCWWGG	2 cut(s)	342, 575
Bst2UI	CCWGG	2 cut(s)	465, 506
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	55, 184
BstACI	GRCGYC	3 cut(s)	174, 216, 228
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	88
BstDSI	CCRYGG	2 cut(s)	219, 575
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	4 cut(s)	248, 319, 376, 388
BstMAI	GTCTC	5 cut(s)	46, 113, 181, 240, 657
BstMBI	GATC	4 cut(s)	245, 316, 373, 385
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 215, 256, 335, 586, 611
BstNI	CCWGG	2 cut(s)	465, 506
BstSCI	CCNGG	3 cut(s)	281, 463, 504
BstV1I	GCAGC	5 cut(s)	148, 314, 322, 325, 343
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	366, 469, 504, 580
BtgI	CCRYGG	2 cut(s)	219, 575
BtrI	CACGTC	2 cut(s)	234, 690
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	4 cut(s)	36, 375, 433, 709
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	365, 467, 579
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	444, 636, 694
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	3 cut(s)	576, 649, 684
CviQI	GTAC	3 cut(s)	444, 636, 694
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	4 cut(s)	247, 318, 375, 387
DpnII	GATC	4 cut(s)	245, 316, 373, 385
DraIII	CACNNNGTG	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	55, 184
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	2 cut(s)	55, 184
Eco130I	CCWWGG	2 cut(s)	342, 575
Eco72I	CACGTG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	463, 504
EcoT14I	CCWWGG	2 cut(s)	342, 575
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	2 cut(s)	342, 575
Esp3I	CGTCTC	3 cut(s)	113, 181, 240
FaeI	CATG	3 cut(s)	579, 652, 687
FatI	CATG	3 cut(s)	575, 648, 683
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	8 cut(s)	162, 207, 303, 336, 339, 357, 460, 587
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	8 cut(s)	162, 207, 303, 336, 339, 357, 460, 587
FspBI	CTAG	3 cut(s)	156, 201, 566
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	8 cut(s)	162, 207, 303, 336, 339, 357, 460, 587
GsuI	CTGGAG	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	366, 469, 504, 580
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	3 cut(s)	174, 216, 228
Hin1II	CATG	3 cut(s)	579, 652, 687
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	1 cut(s)	668
HpaII	CCGG	1 cut(s)	282
Hpy166II	GTNNAC	5 cut(s)	169, 190, 644, 696, 709
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	5 cut(s)	169, 190, 644, 696, 709
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	4 cut(s)	74, 228, 233, 689
HpyCH4V	TGCA	5 cut(s)	69, 302, 400, 431, 687
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 215, 256, 335, 586, 611
HpySE526I	ACGT	4 cut(s)	74, 228, 233, 689
Hsp92I	GRCGYC	3 cut(s)	174, 216, 228
Hsp92II	CATG	3 cut(s)	579, 652, 687
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
Kzo9I	GATC	4 cut(s)	245, 316, 373, 385
LmnI	GCTCC	4 cut(s)	346, 456, 489, 577
Lsp1109I	GCAGC	5 cut(s)	148, 314, 322, 325, 343
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	3 cut(s)	156, 201, 566
MaeII	ACGT	4 cut(s)	74, 228, 233, 689
MaeIII	GTNAC	2 cut(s)	229, 598
MalI	GATC	4 cut(s)	247, 318, 375, 387
MboI	GATC	4 cut(s)	245, 316, 373, 385
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	2 cut(s)	492, 620
Mly113I	GGCGCC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	58, 356, 480, 497, 550
MseI	TTAA	1 cut(s)	254
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	283, 465, 506
MvaI	CCWGG	2 cut(s)	465, 506
MwoI	GCNNNNNNNGC	6 cut(s)	138, 215, 256, 335, 586, 611
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	575
NdeII	GATC	4 cut(s)	245, 316, 373, 385
NlaIII	CATG	3 cut(s)	579, 652, 687
NlaIV	GGNNCC	4 cut(s)	217, 458, 485, 581
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	668
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	8 cut(s)	163, 208, 304, 337, 340, 358, 461, 588
PluTI	GGCGCC	1 cut(s)	219
PmaCI	CACGTG	1 cut(s)	75
PmlI	CACGTG	1 cut(s)	75
Ppu21I	YACGTR	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	463, 504
PspCI	CACGTG	1 cut(s)	75
PspGI	CCWGG	2 cut(s)	463, 504
PspN4I	GGNNCC	4 cut(s)	217, 458, 485, 581
PspPI	GGNCC	3 cut(s)	365, 467, 579
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	3 cut(s)	445, 637, 695
RsaNI	GTAC	3 cut(s)	444, 636, 694
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	8 cut(s)	162, 207, 303, 336, 339, 357, 460, 587
Sau3AI	GATC	4 cut(s)	245, 316, 373, 385
Sau96I	GGNCC	3 cut(s)	365, 467, 579
ScrFI	CCNGG	3 cut(s)	283, 465, 506
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	322
SfoI	GGCGCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	492, 620
SsiI	CCGC	5 cut(s)	86, 130, 206, 460, 587
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	3 cut(s)	156, 201, 566
StyD4I	CCNGG	3 cut(s)	281, 463, 504
StyI	CCWWGG	2 cut(s)	342, 575
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	4 cut(s)	77, 231, 236, 692
TasI	AATT	2 cut(s)	492, 620
TauI	GCSGC	3 cut(s)	209, 462, 589
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	3 cut(s)	43, 375, 433
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	5 cut(s)	161, 302, 335, 338, 356
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	660
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	3 cut(s)	43, 375, 433
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	620
XspI	CTAG	3 cut(s)	156, 201, 566
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.