Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011736

Physical Location & Seq

Genomic Coordinates Forward (+)

8488695 .. 8490266

Gene Structure 1572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGTTCTCAATCTCATCACTGAAGCAGGTACAACCAATCTTGTGCTTCAAGAACAAGCTATCTAAGGTCAACGTCAACTCTTTTCTCCATCCCAAAGAAAAAGTCATCTTTGTGATGGGAGCTACCGGATCGGGTAAGTCTCGTCTCGCCATCGACCTAGCAACTCGTTTTCAAGGAGAGATCATAAACTCCGACAAGATTCAACTTTACAAGGGCCTAGACGTCCTAACAAACAAAGTCACCCCTAAAGAATGCCGAGGCGTGCCTCACCACTTGCTTGGAGTATTCGACTCCGAAGCCGGAAACCTAACGGCCACCCAGTATAGCCGCCTTGCGTCACAAGCAATCTCGAAACTCTCAGCGAACAACAAGCTTCCCATAGTAGCCGGTGGATCAAACTCTTACATCGAAGCACTTGTTAATCATTCCTCGGGGTTTTTATTAAACAACTACGATTGTTGTTTCATTTGGGTCGACGTTTCCTTACCCGTACTTAACTCCTTTGTCTCAAAACGTGTCGACCGCATGATGGAAGCAGGATTACTCGAAGAAGTAAGAGAAGTGTTCAATCCAAAAGCGAATTACTCCGTAGGGATACGACGAGCTATCGGAGTCCCCGAGCTCCATGAATATTTACGTAACGAATCTCTAGTGGACCGTGCCACAAAAAGTAAAATGCTTGACGTAGCCGTTAAAAATATCAAAAAGAACACTGAGATTTTAGCTTGTCGACAGTTAAAAAAGATTCAACGGCTTCACAAGAAGTGGAAGATGTCTATGCATCGTGTTGACGCCACTGAGGTGTTCTTGAAACGCAACGTAGAAGAACAAGACGAGGCTTGGGAGAATCTTGTAGCGAGACCAAGCGAGAGAATCGTCGATAAGTTTTATAATAATAATAACCAACTGAAAAATGATGATGTTGAGCACTGTTTGGCGGCATCTTACGGCGGAGGAAGTGGAAGTAGAGCCCACAATATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009653 GO:0009690 GO:0009691 GO:0009824 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0010817 GO:0016043 GO:0016049 GO:0016070 GO:0016740 GO:0016765 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0040007 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052381 GO:0052622 GO:0052623 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

329

Amino Acids

36.98

Weight (kDa)

9.41

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	36 - 217	9.9e-12	Isopentenyl transferase
IPPT	PF01715	69 - 143	5.1e-19	IPP transferase
IPPT	PF01715	151 - 248	2.3e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23630 AT5G19040 AT5G19040 AT5G19040
fragaria_vesca	FvH4_4g14440
malus_domestica	MD13G1182800.v1.1 MD16G1183400.v1.1
prunus_persica	Prupe.1G150800_v2.0.a1
pyrus_communis	pycom13g15770 pycom16g15410
rosa_chinensis	RchiOBHm_Chr4g0418401
rosa_laevigata	RLG00000007870
rosa_multiflora	Rmu_sc0001266.1_g000013
rosa_roxburghii	Rroxscaffold_5G00361580
rosa_rugosa	Rorug04G0152700
rosa_samantha	Rh4BG216100 Rh4CG226100 Rh4DG212800
rosa_wichuraiana	Rw4G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	19
AccI	GTMKAC	3 cut(s)	477, 522, 733
AciI	CCGC	4 cut(s)	331, 526, 941, 954
AclWI	GGATC	2 cut(s)	139, 403
AcoI	YGGCCR	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	225, 795
AfaI	GTAC	2 cut(s)	33, 495
AfiI	CCNNNNNNNGG	1 cut(s)	532
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	6 cut(s)	52, 176, 206, 571, 752, 814
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	6 cut(s)	61, 125, 376, 608, 625, 728
AluI	AGCT	6 cut(s)	61, 125, 376, 608, 625, 728
Alw21I	GWGCWC	2 cut(s)	627, 933
Alw26I	GTCTC	4 cut(s)	147, 152, 514, 856
AlwI	GGATC	2 cut(s)	139, 403
Ama87I	CYCGRG	2 cut(s)	433, 620
AoxI	GGCC	2 cut(s)	217, 315
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspS9I	GGNCC	2 cut(s)	217, 658
AsuHPI	GGTGA	2 cut(s)	235, 263
AvaI	CYCGRG	2 cut(s)	433, 620
AvaII	GGWCC	1 cut(s)	658
BanII	GRGCYC	2 cut(s)	627, 976
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
Bbv12I	GWGCWC	2 cut(s)	627, 933
BccI	CCATC	4 cut(s)	99, 112, 161, 526
BceAI	ACGGC	4 cut(s)	330, 677, 770, 967
BciVI	GTATCC	1 cut(s)	591
BcoDI	GTCTC	4 cut(s)	147, 152, 514, 856
BfaI	CTAG	3 cut(s)	161, 221, 653
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	591
BisI	GCNGC	2 cut(s)	331, 942
BlsI	GCNGC	2 cut(s)	332, 943
Bme18I	GGWCC	1 cut(s)	658
BmeT110I	CYCGRG	2 cut(s)	433, 620
BmgT120I	GGNCC	2 cut(s)	217, 658
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	793, 953
BmuI	ACTGGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	641
BsaHI	GRCGYC	2 cut(s)	225, 795
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	2 cut(s)	259, 432
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	259, 432
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	3 cut(s)	375, 708, 792
BseNI	ACTGG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	219, 317
BsiEI	CGRYCG	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	627, 933
BsiHKCI	CYCGRG	2 cut(s)	433, 620
BsiSI	CCGG	3 cut(s)	129, 303, 390
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	4 cut(s)	147, 152, 514, 856
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	219, 317
Bso31I	GGTCTC	1 cut(s)	856
BsoBI	CYCGRG	2 cut(s)	433, 620
Bsp1286I	GDGCHC	3 cut(s)	627, 933, 976
Bsp143I	GATC	3 cut(s)	131, 183, 395
BspACI	CCGC	4 cut(s)	331, 526, 941, 954
BspANI	GGCC	2 cut(s)	219, 317
BspCNI	CTCAG	3 cut(s)	374, 709, 793
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	139, 403
BspTNI	GGTCTC	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	259, 432
BssMI	GATC	3 cut(s)	131, 183, 395
BssNI	GRCGYC	2 cut(s)	225, 795
Bst4CI	ACNGT	3 cut(s)	662, 738, 935
BstACI	GRCGYC	2 cut(s)	225, 795
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	4 cut(s)	66, 361, 717, 801
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	3 cut(s)	134, 186, 398
BstMAI	GTCTC	4 cut(s)	147, 152, 514, 856
BstMBI	GATC	3 cut(s)	131, 183, 395
BstMCI	CGRYCG	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSNI	TACGTA	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	219, 317
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	4 cut(s)	20, 714, 798, 931
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	217, 658
CseI	GACGC	2 cut(s)	327, 803
Csp6I	GTAC	2 cut(s)	32, 494
CviAII	CATG	2 cut(s)	529, 629
CviQI	GTAC	2 cut(s)	32, 494
DdeI	CTNAG	4 cut(s)	66, 361, 717, 801
DpnI	GATC	3 cut(s)	133, 185, 397
DpnII	GATC	3 cut(s)	131, 183, 395
EaeI	YGGCCR	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	969
Ecl136II	GAGCTC	1 cut(s)	625
Eco105I	TACGTA	1 cut(s)	641
Eco24I	GRGCYC	2 cut(s)	627, 976
Eco31I	GGTCTC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	433, 620
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	786
EcoT38I	GRGCYC	2 cut(s)	627, 976
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	532, 632
FaiI	YATR	9 cut(s)	188, 327, 383, 530, 630, 782, 894, 983, 988
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	2 cut(s)	528, 628
FblI	GTMKAC	3 cut(s)	477, 522, 733
Fnu4HI	GCNGC	2 cut(s)	331, 942
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	2 cut(s)	627, 976
Fsp4HI	GCNGC	2 cut(s)	331, 942
FspBI	CTAG	3 cut(s)	161, 221, 653
GluI	GCNGC	2 cut(s)	331, 942
HaeIII	GGCC	2 cut(s)	219, 317
HapII	CCGG	3 cut(s)	129, 303, 390
HgaI	GACGC	2 cut(s)	327, 803
Hin1I	GRCGYC	2 cut(s)	225, 795
Hin1II	CATG	2 cut(s)	532, 632
HincII	GTYRAC	6 cut(s)	73, 79, 478, 523, 734, 793
HindII	GTYRAC	6 cut(s)	73, 79, 478, 523, 734, 793
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	7 cut(s)	202, 293, 615, 647, 748, 850, 876
HpaII	CCGG	3 cut(s)	129, 303, 390
HphI	GGTGA	2 cut(s)	235, 263
Hpy166II	GTNNAC	7 cut(s)	73, 79, 478, 523, 658, 734, 793
Hpy188I	TCNGA	3 cut(s)	196, 298, 614
Hpy188III	TCNNGA	3 cut(s)	52, 352, 811
Hpy8I	GTNNAC	7 cut(s)	73, 79, 478, 523, 658, 734, 793
Hpy99I	CGWCG	3 cut(s)	482, 606, 884
HpyCH4III	ACNGT	3 cut(s)	662, 738, 935
HpyCH4IV	ACGT	7 cut(s)	75, 225, 480, 517, 640, 687, 822
HpyCH4V	TGCA	1 cut(s)	784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	4 cut(s)	66, 361, 717, 801
HpySE526I	ACGT	7 cut(s)	75, 225, 480, 517, 640, 687, 822
Hsp92I	GRCGYC	2 cut(s)	225, 795
Hsp92II	CATG	2 cut(s)	532, 632
Kzo9I	GATC	3 cut(s)	131, 183, 395
LmnI	GCTCC	2 cut(s)	122, 630
LpnPI	CCDG	6 cut(s)	14, 142, 316, 335, 403, 525
LweI	GCATC	2 cut(s)	793, 953
MaeI	CTAG	3 cut(s)	161, 221, 653
MaeII	ACGT	7 cut(s)	75, 225, 480, 517, 640, 687, 822
MaeIII	GTNAC	3 cut(s)	241, 339, 641
MalI	GATC	3 cut(s)	133, 185, 397
MboI	GATC	3 cut(s)	131, 183, 395
MboII	GAAGA	3 cut(s)	563, 784, 839
MhlI	GDGCHC	3 cut(s)	627, 933, 976
MluCI	AATT	1 cut(s)	583
MlyI	GAGTC	2 cut(s)	287, 624
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	254, 279, 442, 796, 832, 950
Mph1103I	ATGCAT	1 cut(s)	786
MseI	TTAA	5 cut(s)	423, 446, 498, 696, 740
MslI	CAYNNNNRTG	2 cut(s)	113, 803
MspI	CCGG	3 cut(s)	129, 303, 390
Mva1269I	GAATGC	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	3 cut(s)	131, 183, 395
NlaIII	CATG	2 cut(s)	532, 632
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	2 cut(s)	241, 339
NsiI	ATGCAT	1 cut(s)	786
OliI	CACNNNNGTG	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	202, 647, 748, 850, 876
PkrI	GCNGC	2 cut(s)	332, 943
PleI	GAGTC	2 cut(s)	287, 623
PpsI	GAGTC	2 cut(s)	287, 623
Ppu21I	YACGTR	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	894
Psp124BI	GAGCTC	1 cut(s)	627
PspPI	GGNCC	2 cut(s)	217, 658
RsaI	GTAC	2 cut(s)	33, 495
RsaNI	GTAC	2 cut(s)	32, 494
RseI	CAYNNNNRTG	2 cut(s)	113, 803
SacI	GAGCTC	1 cut(s)	627
SalI	GTCGAC	3 cut(s)	476, 521, 732
SaqAI	TTAA	5 cut(s)	423, 446, 498, 696, 740
SatI	GCNGC	2 cut(s)	331, 942
Sau3AI	GATC	3 cut(s)	131, 183, 395
Sau96I	GGNCC	2 cut(s)	217, 658
SchI	GAGTC	2 cut(s)	287, 624
SduI	GDGCHC	3 cut(s)	627, 933, 976
SfaNI	GCATC	2 cut(s)	793, 953
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	2 cut(s)	113, 803
SnaBI	TACGTA	1 cut(s)	641
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	4 cut(s)	331, 526, 941, 954
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	3 cut(s)	161, 221, 653
SstI	GAGCTC	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	662, 738, 935
TaiI	ACGT	7 cut(s)	78, 228, 483, 520, 643, 690, 825
TaqI	TCGA	9 cut(s)	156, 291, 353, 411, 477, 522, 549, 733, 882
TasI	AATT	1 cut(s)	583
TauI	GCSGC	2 cut(s)	333, 944
TfiI	GAWTC	5 cut(s)	202, 647, 748, 850, 876
Tru1I	TTAA	5 cut(s)	423, 446, 498, 696, 740
Tru9I	TTAA	5 cut(s)	423, 446, 498, 696, 740
TscAI	CASTG	4 cut(s)	27, 721, 805, 938
TseFI	GTSAC	2 cut(s)	241, 339
Tsp45I	GTSAC	2 cut(s)	241, 339
TspDTI	ATGAA	3 cut(s)	17, 457, 645
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	4 cut(s)	27, 721, 805, 938
VpaK11BI	GGWCC	1 cut(s)	658
XmiI	GTMKAC	3 cut(s)	477, 522, 733
XspI	CTAG	3 cut(s)	161, 221, 653
ZraI	GACGTC	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.