Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011736

Physical Location & Seq

Genomic Coordinates Reverse (-)

6361776 .. 6363713

Gene Structure 1938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGCCATGCATGACGGCTCTAAGACAAGTGATTCAACCATTGTCGTTGAACTTCCAAGGAAACATGGTGGACGTTCCGTTTTTCCGGCGAAAAGACAAGGTTGTTTTCGTCATGGGAGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCACTCGTTTTCCGGCGGAGATTGTAAACTCCGACAAGATCCAGGTCTATAAAGGTCTAGACATTGTGACTAACAAAGTCACTCCTGAGGAAAGCCTTGGCGTTCCTCACCACCTTCTCGGCACCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTTCAGCGTGAAGCAATCAGGGCCGTCGAGTCAATCGTCCAGAGAGACCGTGTCCCGATCATAGCCGGTGGTTCCAATTCTTACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCTTGTGGGTCGACGTCTCTAGACCGGTTTTACACTCGTTTGTCTCGGAGCGAGTTGATAAGATGGTTGATATGGGTCTCGTCGACGAGGTTCGCCGCATCTTCGATCCGTCTTCGTCGGATTACTCCGCTGGAATTCGCCGAGCCATTGGAGTTCCAGAGCTCGACGAATTTCTCCGTTCGGAGATGCGGAATTATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATCGAGAAGATTAAAGAGAACACTTGTTTGCTTGCGTGTAGACAATTGCAGAAGATTCAAAGGCTTTACAAGCAGTGGAAGTGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAGAAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAAAGTTCCTTAGTTACAGCGATGACCACCATTTGGAAGGCGCCAATATTCTCCTACCGGAGATCTCTGCCGTTCCGCCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009653 GO:0009690 GO:0009691 GO:0009824 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0010817 GO:0016043 GO:0016049 GO:0016070 GO:0016740 GO:0016765 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0040007 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052381 GO:0052622 GO:0052623 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

330

Amino Acids

37.39

Weight (kDa)

5.59

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	35 - 156	3.8e-10	Isopentenyl transferase
IPPT	PF01715	68 - 143	5.8e-22	IPP transferase
IPPT	PF01715	149 - 248	1.8e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23630 AT5G19040 AT5G19040 AT5G19040
fragaria_vesca	FvH4_4g14440
malus_domestica	MD13G1182800.v1.1 MD16G1183400.v1.1
prunus_persica	Prupe.1G150800_v2.0.a1
pyrus_communis	pycom13g15770 pycom16g15410
rosa_chinensis	RchiOBHm_Chr4g0418401
rosa_laevigata	RLG00000007870
rosa_multiflora	Rmu_sc0001266.1_g000013
rosa_roxburghii	Rroxscaffold_5G00361580
rosa_rugosa	Rorug04G0152700
rosa_samantha	Rh4BG216100 Rh4CG226100 Rh4DG212800
rosa_wichuraiana	Rw4G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
AccB1I	GGYRCC	2 cut(s)	281, 920
AccB7I	CCANNNNNTGG	1 cut(s)	913
AccI	GTMKAC	4 cut(s)	471, 543, 733, 792
AccII	CGCG	1 cut(s)	797
AciI	CCGC	9 cut(s)	176, 314, 556, 588, 649, 662, 956, 969, 977
AclWI	GGATC	2 cut(s)	193, 560
AcsI	RAATTY	2 cut(s)	594, 629
AcyI	GRCGYC	2 cut(s)	474, 921
AfiI	CCNNNNNNNGG	1 cut(s)	913
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	38, 52, 686, 752
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	622, 830
AluI	AGCT	2 cut(s)	622, 830
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	6 cut(s)	360, 481, 508, 542, 659, 670
AlwI	GGATC	2 cut(s)	193, 560
AoxI	GGCC	1 cut(s)	342
ApoI	RAATTY	2 cut(s)	594, 629
AsiGI	ACCGGT	1 cut(s)	484
AspLEI	GCGC	2 cut(s)	869, 923
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	988
AsuHPI	GGTGA	1 cut(s)	260
AxyI	CCTNAGG	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	281, 920
BanII	GRGCYC	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	624
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	7 cut(s)	33, 327, 329, 705, 860, 935, 956
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	988
BcoDI	GTCTC	6 cut(s)	360, 481, 508, 542, 659, 670
BfaI	CTAG	4 cut(s)	146, 158, 218, 480
BfoI	RGCGCY	1 cut(s)	924
BglI	GCCNNNNNGGC	2 cut(s)	974, 977
BglII	AGATCT	1 cut(s)	942
BisI	GCNGC	3 cut(s)	556, 969, 978
BlsI	GCNGC	3 cut(s)	557, 970, 979
Bme1390I	CCNGG	2 cut(s)	203, 988
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	5 cut(s)	121, 130, 283, 394, 922
BmrFI	CCNGG	2 cut(s)	203, 988
BmsI	GCATC	2 cut(s)	567, 636
BpiI	GAAGAC	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	988
BsaHI	GRCGYC	2 cut(s)	474, 921
BsaI	GGTCTC	2 cut(s)	360, 542
BsaJI	CCNNGG	3 cut(s)	58, 256, 972
BsaWI	WCCGGW	4 cut(s)	125, 438, 484, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	913
Bse118I	RCCGGY	3 cut(s)	131, 386, 484
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	58, 256, 972
BseGI	GGATG	1 cut(s)	859
BseLI	CCNNNNNNNGG	1 cut(s)	913
BseMII	CTCAG	2 cut(s)	237, 864
BseRI	GAGGAG	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	797
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	281, 920
BshTI	ACCGGT	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	913
BsmAI	GTCTC	6 cut(s)	360, 481, 508, 542, 659, 670
BsmBI	CGTCTC	2 cut(s)	481, 659
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	2 cut(s)	360, 542
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	198, 378, 565, 693, 942
BspACI	CCGC	9 cut(s)	176, 314, 556, 588, 649, 662, 956, 969, 977
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	238, 863
BspFNI	CGCG	1 cut(s)	797
BspLI	GGNNCC	5 cut(s)	121, 130, 283, 394, 922
BspPI	GGATC	2 cut(s)	193, 560
BspT107I	GGYRCC	2 cut(s)	281, 920
BspTNI	GGTCTC	2 cut(s)	360, 542
BsrFI	RCCGGY	3 cut(s)	131, 386, 484
BssAI	RCCGGY	3 cut(s)	131, 386, 484
BssECI	CCNNGG	3 cut(s)	58, 256, 972
BssMI	GATC	5 cut(s)	198, 378, 565, 693, 942
BssNI	GRCGYC	2 cut(s)	474, 921
BssT1I	CCWWGG	2 cut(s)	58, 256
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	286, 371, 788
Bst6I	CTCTTC	1 cut(s)	966
BstACI	GRCGYC	2 cut(s)	474, 921
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	4 cut(s)	23, 246, 850, 890
BstDSI	CCRYGG	1 cut(s)	972
BstF5I	GGATG	1 cut(s)	859
BstFNI	CGCG	1 cut(s)	797
BstH2I	RGCGCY	1 cut(s)	924
BstHHI	GCGC	2 cut(s)	869, 923
BstKTI	GATC	5 cut(s)	201, 381, 568, 696, 945
BstMAI	GTCTC	6 cut(s)	360, 481, 508, 542, 659, 670
BstMBI	GATC	5 cut(s)	198, 378, 565, 693, 942
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 763, 836, 974, 977
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	2 cut(s)	201, 986
BstUI	CGCG	1 cut(s)	797
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	198, 942
BstYI	RGATCY	2 cut(s)	198, 942
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	972
BtgZI	GCGATG	1 cut(s)	915
BtsCI	GGATG	1 cut(s)	859
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	2 cut(s)	773, 858
Cac8I	GCNNGC	1 cut(s)	726
CfoI	GCGC	2 cut(s)	869, 923
Cfr10I	RCCGGY	3 cut(s)	131, 386, 484
Cfr13I	GGNCC	1 cut(s)	342
CseI	GACGC	1 cut(s)	803
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	5 cut(s)	9, 13, 67, 115, 781
DdeI	CTNAG	4 cut(s)	23, 246, 850, 890
DinI	GGCGCC	1 cut(s)	922
DpnI	GATC	5 cut(s)	200, 380, 567, 695, 944
DpnII	GATC	5 cut(s)	198, 378, 565, 693, 942
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
EciI	GGCGGA	4 cut(s)	191, 329, 677, 945
Ecl136II	GAGCTC	1 cut(s)	622
Eco130I	CCWWGG	2 cut(s)	58, 256
Eco24I	GRGCYC	1 cut(s)	624
Eco31I	GGTCTC	2 cut(s)	360, 542
Eco53kI	GAGCTC	1 cut(s)	622
Eco81I	CCTNAGG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	58, 256
EcoT22I	ATGCAT	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	624
EgeI	GGCGCC	1 cut(s)	922
EheI	GGCGCC	1 cut(s)	922
ErhI	CCWWGG	2 cut(s)	58, 256
Esp3I	CGTCTC	2 cut(s)	481, 659
FaeI	CATG	5 cut(s)	12, 16, 70, 118, 784
FaiI	YATR	9 cut(s)	10, 14, 68, 116, 210, 383, 450, 533, 782
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	5 cut(s)	8, 12, 66, 114, 780
FblI	GTMKAC	4 cut(s)	471, 543, 733, 792
Fnu4HI	GCNGC	3 cut(s)	556, 969, 978
FokI	GGATG	1 cut(s)	846
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	556, 969, 978
FspBI	CTAG	4 cut(s)	146, 158, 218, 480
GlaI	GCGC	2 cut(s)	868, 922
GluI	GCNGC	3 cut(s)	556, 969, 978
HaeII	RGCGCY	1 cut(s)	924
HaeIII	GGCC	1 cut(s)	344
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	2 cut(s)	869, 923
Hin1I	GRCGYC	2 cut(s)	474, 921
Hin1II	CATG	5 cut(s)	12, 16, 70, 118, 784
Hin6I	GCGC	2 cut(s)	867, 921
HinP1I	GCGC	2 cut(s)	867, 921
HincII	GTYRAC	5 cut(s)	421, 433, 472, 544, 793
HindII	GTYRAC	5 cut(s)	421, 433, 472, 544, 793
HinfI	GANTC	3 cut(s)	34, 350, 748
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	9 cut(s)	73, 187, 289, 421, 433, 472, 544, 734, 793
Hpy188I	TCNGA	6 cut(s)	193, 508, 580, 643, 815, 864
Hpy188III	TCNNGA	8 cut(s)	218, 245, 361, 376, 480, 617, 683, 697
Hpy8I	GTNNAC	9 cut(s)	73, 187, 289, 421, 433, 472, 544, 734, 793
HpyAV	CCTTC	2 cut(s)	284, 911
HpyCH4III	ACNGT	3 cut(s)	286, 371, 788
HpyCH4IV	ACGT	2 cut(s)	75, 474
HpyCH4V	TGCA	3 cut(s)	12, 742, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 763, 836, 974, 977
HpyF3I	CTNAG	4 cut(s)	23, 246, 850, 890
HpySE526I	ACGT	2 cut(s)	75, 474
Hsp92I	GRCGYC	2 cut(s)	474, 921
Hsp92II	CATG	5 cut(s)	12, 16, 70, 118, 784
HspAI	GCGC	2 cut(s)	867, 921
KasI	GGCGCC	1 cut(s)	920
Kzo9I	GATC	5 cut(s)	198, 378, 565, 693, 942
LmnI	GCTCC	2 cut(s)	119, 508
LweI	GCATC	2 cut(s)	567, 636
MaeI	CTAG	4 cut(s)	146, 158, 218, 480
MaeII	ACGT	2 cut(s)	75, 474
MaeIII	GTNAC	3 cut(s)	226, 238, 893
MalI	GATC	5 cut(s)	200, 380, 567, 695, 944
MboI	GATC	5 cut(s)	198, 378, 565, 693, 942
MboII	GAAGA	7 cut(s)	314, 553, 564, 712, 757, 836, 953
MfeI	CAATTG	1 cut(s)	737
MflI	RGATCY	2 cut(s)	198, 942
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	6 cut(s)	397, 451, 594, 629, 652, 737
Mly113I	GGCGCC	1 cut(s)	921
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	3 cut(s)	216, 558, 838
MnlI	CCTC	9 cut(s)	241, 276, 310, 403, 541, 796, 812, 829, 969
Mph1103I	ATGCAT	1 cut(s)	14
MseI	TTAA	2 cut(s)	443, 705
MspA1I	CMGCKG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	203, 988
MunI	CAATTG	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	5 cut(s)	341, 763, 836, 974, 977
NarI	GGCGCC	1 cut(s)	921
NciI	CCSGG	1 cut(s)	988
NdeII	GATC	5 cut(s)	198, 378, 565, 693, 942
NlaIII	CATG	5 cut(s)	12, 16, 70, 118, 784
NlaIV	GGNNCC	5 cut(s)	121, 130, 283, 394, 922
NmeAIII	GCCGAG	2 cut(s)	258, 626
NmuCI	GTSAC	2 cut(s)	226, 238
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 354
PfeI	GAWTC	2 cut(s)	34, 748
PflFI	GACNNNGTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	913
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	557, 970, 979
Ple19I	CGATCG	1 cut(s)	696
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	924
PpsI	GAGTC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	5 cut(s)	121, 130, 283, 394, 922
PspPI	GGNCC	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	198, 942
PsyI	GACNNNGTC	1 cut(s)	371
PvuI	CGATCG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	624
SalI	GTCGAC	3 cut(s)	470, 542, 791
SaqAI	TTAA	2 cut(s)	443, 705
SatI	GCNGC	3 cut(s)	556, 969, 978
Sau3AI	GATC	5 cut(s)	198, 378, 565, 693, 942
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	203, 988
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	567, 636
SfoI	GGCGCC	1 cut(s)	922
SgrDI	CGTCGACG	1 cut(s)	542
Sse9I	AATT	6 cut(s)	397, 451, 594, 629, 652, 737
SsiI	CCGC	9 cut(s)	176, 314, 556, 588, 649, 662, 956, 969, 977
SspDI	GGCGCC	1 cut(s)	920
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	4 cut(s)	146, 158, 218, 480
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	201, 986
StyI	CCWWGG	2 cut(s)	58, 256
TaaI	ACNGT	3 cut(s)	286, 371, 788
TaiI	ACGT	2 cut(s)	78, 477
TaqI	TCGA	9 cut(s)	348, 408, 471, 543, 564, 624, 696, 792, 879
TasI	AATT	6 cut(s)	397, 451, 594, 629, 652, 737
TauI	GCSGC	3 cut(s)	558, 971, 980
TfiI	GAWTC	2 cut(s)	34, 748
Tru1I	TTAA	2 cut(s)	443, 705
Tru9I	TTAA	2 cut(s)	443, 705
TscAI	CASTG	2 cut(s)	773, 858
TseFI	GTSAC	2 cut(s)	226, 238
Tsp45I	GTSAC	2 cut(s)	226, 238
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	5 cut(s)	69, 558, 626, 686, 815
TspRI	CASTG	2 cut(s)	773, 858
Tth111I	GACNNNGTC	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	913
XapI	RAATTY	2 cut(s)	594, 629
XbaI	TCTAGA	2 cut(s)	217, 479
XceI	RCATGY	1 cut(s)	784
XmiI	GTMKAC	4 cut(s)	471, 543, 733, 792
XspI	CTAG	4 cut(s)	146, 158, 218, 480
ZraI	GACGTC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.