Rw4G018210

Adenylate isopentenyltransferase 5

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
40489000 .. 40491001
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018210.1

Sequence Viewer

Length: 1059 bp
ATGCAAACTCTTTTCTCCATGGCTGCCTGCCAACAAGTAGTTCACATACAGCCGATGGTAAGATTCCAAAACCCGCCAGCCGGACTATCCATTGATCGATTTTTCAGTCGGAATAAGGATAAGGTTGTGATAGTAATGGGAGCCACGGGAACCGGTAAGTCCAGGCTTGCCATAGACCTTGCATTAAAATATTCGGCCGAGATCATAAACTCGGATAAAATGCAAGTCTATAAAGGTTTGGACACCCTCACCAACAAGGTCACTGAGGAGGAGTGCAAAGGCGTACCACATCACCTGTTGGGCACAGTAGATCCTGAGTCGAACTTCACAGTTAATGATTTTAAGCTTCATGCGTCTTTGGCCATTGAATCGATCCTGGAGCGTAACCGGTTACCTATCATCGCCGGTGGATCAAACTCGTACATAGAGGCACTGGTGGACGAGCACCCCGAGTTTCGGAGGAGGTACGAGTGCTGCTTTCTTTGGGTCGACGTAACGCCGCTGGTGCTCAACTCGTTTGTGTCGGAGCGAGTTGATCGGATGGTGGAGGTGGGTGGTCTGGTGGACGAGGTGAGGAGAATGTTCGACCCAACAGCCGACGAGGAGGACTATAGCACCGGGATTAAGAAAGCTATCGGAGTTCCAGAGATGCATCATTACTTGCGCGGCGAAGCGTGTGGCAACGACGAAGAGACTCAAAAAGCGCTGTTGATGGAAGCTATTTCGAACATCAAGAAGAATACTCGCACGTTGGCCCATCGCCAACTGCAAAAGATTCACCGACTGCGGAGCAAGTGGAACTGGAGCATGCACCGCCTCGACGCCACCGAAGCTTTCTTGAACCACCGTCGCGGCCGGGAGGGAGACCGAGTGTGGGAGAAGCAAGTTGCGAGACCCGCCACAGGAATCGTCAGTCAGTTCCGCGTAGACCCAATGTCAACCATTCTTCCTCATGACACTGCCTTTGTAGCTGCAGCGGCTACGGCCGGCAGCACCAGCACCACCAGTGTCAATTCTCTTGCGGTGTCCATGCCGGCCGTGGCTGCTGCAACACGGTAG

Protein Analysis

352

Amino Acids

39.35

Weight (kDa)

7.2

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 41 - 149 1.4e-08 Isopentenyl transferase
IPPT PF01715 75 - 150 1.3e-22 IPP transferase
IPPT PF01715 152 - 257 8e-14 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011736)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 489, 927
AccII CGCG 3 cut(s) 666, 852, 924
AclWI GGATC 3 cut(s) 305, 367, 418
AcoI YGGCCR 5 cut(s) 195, 360, 853, 984, 1035
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 3 cut(s) 285, 422, 467
AfeI AGCGCT 1 cut(s) 705
AfiI CCNNNNNNNGG 4 cut(s) 80, 456, 874, 902
AgeI ACCGGT 2 cut(s) 152, 387
AgsI TTSAA 2 cut(s) 368, 841
AhdI GACNNNNNGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 161, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 5 cut(s) 346, 632, 719, 833, 971
AluI AGCT 5 cut(s) 346, 632, 719, 833, 971
Alw21I GWGCWC 2 cut(s) 447, 510
Alw26I GTCTC 3 cut(s) 686, 858, 886
AlwI GGATC 3 cut(s) 305, 367, 418
Ama87I CYCGRG 1 cut(s) 449
Aor51HI AGCGCT 1 cut(s) 705
AoxI GGCC 6 cut(s) 195, 360, 753, 853, 984, 1035
ApeKI GCWGC 7 cut(s) 23, 474, 971, 974, 990, 1043, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AsiGI ACCGGT 2 cut(s) 152, 387
AspLEI GCGC 2 cut(s) 666, 706
AspS9I GGNCC 1 cut(s) 754
AsuC2I CCSGG 2 cut(s) 619, 857
AsuHPI GGTGA 4 cut(s) 241, 284, 583, 770
AsuII TTCGAA 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 447, 510
BbvI GCAGC 7 cut(s) 10, 461, 958, 986, 1002, 1030, 1033
BccI CCATC 4 cut(s) 49, 535, 706, 765
BceAI ACGGC 2 cut(s) 999, 1022
BciT130I CCWGG 2 cut(s) 163, 377
BcnI CCSGG 2 cut(s) 619, 857
BcoDI GTCTC 3 cut(s) 686, 858, 886
BfmI CTRYAG 2 cut(s) 610, 972
BfoI RGCGCY 1 cut(s) 707
Bme1390I CCNGG 4 cut(s) 163, 377, 619, 857
BmeRI GACNNNNNGTC 1 cut(s) 934
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 754
BmiI GGNNCC 2 cut(s) 142, 151
BmrFI CCNGG 4 cut(s) 163, 377, 619, 857
BmsI GCATC 2 cut(s) 639, 661
BpmI CTGGAG 2 cut(s) 398, 823
Bpu14I TTCGAA 1 cut(s) 725
BpuMI CCSGG 2 cut(s) 619, 857
Bsa29I ATCGAT 2 cut(s) 97, 371
BsaHI GRCGYC 1 cut(s) 822
BsaI GGTCTC 2 cut(s) 858, 886
BsaJI CCNNGG 3 cut(s) 18, 144, 1038
BsaWI WCCGGW 2 cut(s) 152, 387
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 456, 874, 902
Bse118I RCCGGY 5 cut(s) 152, 387, 404, 986, 1033
Bse1I ACTGG 3 cut(s) 438, 806, 1005
BseBI CCWGG 2 cut(s) 163, 377
BseCI ATCGAT 2 cut(s) 97, 371
BseDI CCNNGG 3 cut(s) 18, 144, 1038
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 4 cut(s) 80, 456, 874, 902
BseMII CTCAG 2 cut(s) 255, 306
BseNI ACTGG 3 cut(s) 438, 806, 1005
BseRI GAGGAG 5 cut(s) 281, 284, 475, 589, 617
BseSI GKGCMC 1 cut(s) 305
BseX3I CGGCCG 4 cut(s) 195, 853, 984, 1035
BseXI GCAGC 7 cut(s) 10, 461, 958, 986, 1002, 1030, 1033
Bsh1236I CGCG 3 cut(s) 666, 852, 924
Bsh1285I CGRYCG 4 cut(s) 198, 856, 987, 1038
BshFI GGCC 6 cut(s) 197, 362, 755, 855, 986, 1037
BshTI ACCGGT 2 cut(s) 152, 387
BshVI ATCGAT 2 cut(s) 97, 371
BsiEI CGRYCG 4 cut(s) 198, 856, 987, 1038
BsiHKAI GWGCWC 2 cut(s) 447, 510
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 8 cut(s) 81, 153, 388, 405, 618, 856, 987, 1034
BslI CCNNNNNNNGG 4 cut(s) 80, 456, 874, 902
BsmAI GTCTC 3 cut(s) 686, 858, 886
BsnI GGCC 6 cut(s) 197, 362, 755, 855, 986, 1037
Bso31I GGTCTC 2 cut(s) 858, 886
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 3 cut(s) 305, 447, 510
Bsp143I GATC 6 cut(s) 94, 201, 310, 372, 410, 535
Bsp19I CCATGG 1 cut(s) 18
BspANI GGCC 6 cut(s) 197, 362, 755, 855, 986, 1037
BspCNI CTCAG 2 cut(s) 256, 307
BspDI ATCGAT 2 cut(s) 97, 371
BspFNI CGCG 3 cut(s) 666, 852, 924
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 2 cut(s) 142, 151
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 3 cut(s) 305, 367, 418
BspT104I TTCGAA 1 cut(s) 725
BspTNI GGTCTC 2 cut(s) 858, 886
BsrFI RCCGGY 5 cut(s) 152, 387, 404, 986, 1033
BsrI ACTGG 3 cut(s) 438, 806, 1005
BssAI RCCGGY 5 cut(s) 152, 387, 404, 986, 1033
BssECI CCNNGG 3 cut(s) 18, 144, 1038
BssMI GATC 6 cut(s) 94, 201, 310, 372, 410, 535
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 163, 377
Bst4CI ACNGT 4 cut(s) 307, 331, 848, 1056
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 6 cut(s) 28, 78, 168, 809, 988, 1035
BstDEI CTNAG 2 cut(s) 264, 315
BstDSI CCRYGG 3 cut(s) 18, 144, 1038
BstEII GGTNACC 1 cut(s) 390
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 3 cut(s) 666, 852, 924
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 2 cut(s) 666, 706
BstKTI GATC 6 cut(s) 97, 204, 313, 375, 413, 538
BstMAI GTCTC 3 cut(s) 686, 858, 886
BstMBI GATC 6 cut(s) 94, 201, 310, 372, 410, 535
BstMCI CGRYCG 4 cut(s) 198, 856, 987, 1038
BstNI CCWGG 2 cut(s) 163, 377
BstNSI RCATGY 1 cut(s) 811
BstPI GGTNACC 1 cut(s) 390
BstSCI CCNGG 4 cut(s) 161, 375, 617, 855
BstSFI CTRYAG 2 cut(s) 610, 972
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 3 cut(s) 666, 852, 924
BstV1I GCAGC 7 cut(s) 10, 461, 958, 986, 1002, 1030, 1033
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZI CGGCCG 4 cut(s) 195, 853, 984, 1035
Bsu15I ATCGAT 2 cut(s) 97, 371
BsuRI GGCC 6 cut(s) 197, 362, 755, 855, 986, 1037
BsuTUI ATCGAT 2 cut(s) 97, 371
BtgI CCRYGG 3 cut(s) 18, 144, 1038
BtgZI GCGATG 2 cut(s) 385, 743
BtsCI GGATG 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 4 cut(s) 261, 431, 957, 1012
Cac8I GCNNGC 6 cut(s) 28, 78, 168, 809, 988, 1035
CciI TCATGA 1 cut(s) 952
CfoI GCGC 2 cut(s) 666, 706
Cfr10I RCCGGY 5 cut(s) 152, 387, 404, 986, 1033
Cfr13I GGNCC 1 cut(s) 754
ClaI ATCGAT 2 cut(s) 97, 371
CseI GACGC 2 cut(s) 342, 830
Csp6I GTAC 3 cut(s) 284, 421, 466
CspAI ACCGGT 2 cut(s) 152, 387
CviAII CATG 5 cut(s) 19, 350, 808, 953, 1030
CviQI GTAC 3 cut(s) 284, 421, 466
DdeI CTNAG 2 cut(s) 264, 315
DpnI GATC 6 cut(s) 96, 203, 312, 374, 412, 537
DpnII GATC 6 cut(s) 94, 201, 310, 372, 410, 535
DriI GACNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 5 cut(s) 195, 360, 853, 984, 1035
EagI CGGCCG 4 cut(s) 195, 853, 984, 1035
Eam1104I CTCTTC 1 cut(s) 684
Eam1105I GACNNNNNGTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 684
EclXI CGGCCG 4 cut(s) 195, 853, 984, 1035
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 858, 886
Eco47III AGCGCT 1 cut(s) 705
Eco52I CGGCCG 4 cut(s) 195, 853, 984, 1035
Eco88I CYCGRG 1 cut(s) 449
Eco91I GGTNACC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 161, 375
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 22, 353, 811, 956, 1033
FatI CATG 5 cut(s) 18, 349, 807, 952, 1029
FauI CCCGC 2 cut(s) 81, 904
FblI GTMKAC 2 cut(s) 489, 927
FokI GGATG 1 cut(s) 553
GlaI GCGC 2 cut(s) 665, 705
GsuI CTGGAG 2 cut(s) 398, 823
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 6 cut(s) 197, 362, 755, 855, 986, 1037
HapII CCGG 8 cut(s) 81, 153, 388, 405, 618, 856, 987, 1034
HgaI GACGC 2 cut(s) 342, 830
HhaI GCGC 2 cut(s) 666, 706
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 5 cut(s) 22, 353, 811, 956, 1033
Hin6I GCGC 2 cut(s) 664, 704
HinP1I GCGC 2 cut(s) 664, 704
HincII GTYRAC 2 cut(s) 490, 939
HindII GTYRAC 2 cut(s) 490, 939
HindIII AAGCTT 2 cut(s) 344, 831
HinfI GANTC 6 cut(s) 63, 317, 368, 694, 775, 906
HpaII CCGG 8 cut(s) 81, 153, 388, 405, 618, 856, 987, 1034
HphI GGTGA 4 cut(s) 241, 284, 583, 770
Hpy166II GTNNAC 6 cut(s) 43, 439, 490, 565, 928, 939
Hpy188I TCNGA 6 cut(s) 111, 214, 459, 526, 540, 638
Hpy188III TCNNGA 5 cut(s) 314, 644, 733, 838, 953
Hpy8I GTNNAC 6 cut(s) 43, 439, 490, 565, 928, 939
Hpy99I CGWCG 5 cut(s) 494, 602, 689, 824, 852
HpyCH4III ACNGT 4 cut(s) 307, 331, 848, 1056
HpyCH4IV ACGT 2 cut(s) 492, 749
HpyCH4V TGCA 9 cut(s) 4, 182, 223, 276, 652, 769, 811, 974, 1049
HpyF3I CTNAG 2 cut(s) 264, 315
HpySE526I ACGT 2 cut(s) 492, 749
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 5 cut(s) 22, 353, 811, 956, 1033
HspAI GCGC 2 cut(s) 664, 704
KroI GCCGGC 2 cut(s) 986, 1033
KroNI GCCGGC 2 cut(s) 988, 1035
Kzo9I GATC 6 cut(s) 94, 201, 310, 372, 410, 535
LmnI GCTCC 5 cut(s) 140, 379, 526, 789, 804
Lsp1109I GCAGC 7 cut(s) 10, 461, 958, 986, 1002, 1030, 1033
LweI GCATC 2 cut(s) 639, 661
MaeII ACGT 2 cut(s) 492, 749
MaeIII GTNAC 4 cut(s) 259, 383, 390, 493
MalI GATC 6 cut(s) 96, 203, 312, 374, 412, 537
MboI GATC 6 cut(s) 94, 201, 310, 372, 410, 535
MboII GAAGA 3 cut(s) 701, 748, 938
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 3 cut(s) 305, 447, 510
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 1 cut(s) 1012
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 2 cut(s) 326, 688
MmeI TCCRAC 2 cut(s) 89, 504
Mox20I TGGCCA 1 cut(s) 362
Mph1103I ATGCAT 1 cut(s) 654
MroNI GCCGGC 2 cut(s) 986, 1033
MscI TGGCCA 1 cut(s) 362
MseI TTAA 4 cut(s) 185, 333, 342, 624
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 2 cut(s) 502, 977
MspI CCGG 8 cut(s) 81, 153, 388, 405, 618, 856, 987, 1034
MspR9I CCNGG 4 cut(s) 163, 377, 619, 857
MvaI CCWGG 2 cut(s) 163, 377
MvnI CGCG 3 cut(s) 666, 852, 924
NaeI GCCGGC 2 cut(s) 988, 1035
NciI CCSGG 2 cut(s) 619, 857
NcoI CCATGG 1 cut(s) 18
NdeII GATC 6 cut(s) 94, 201, 310, 372, 410, 535
NgoMIV GCCGGC 2 cut(s) 986, 1033
NlaIII CATG 5 cut(s) 22, 353, 811, 956, 1033
NlaIV GGNNCC 2 cut(s) 142, 151
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 654
NspI RCATGY 1 cut(s) 811
NspV TTCGAA 1 cut(s) 725
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 1 cut(s) 952
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 825
PdiI GCCGGC 2 cut(s) 988, 1035
PfeI GAWTC 4 cut(s) 63, 368, 775, 906
PfoI TCCNGGA 1 cut(s) 375
PinAI ACCGGT 2 cut(s) 152, 387
PleI GAGTC 2 cut(s) 325, 688
PpsI GAGTC 2 cut(s) 325, 688
Psp6I CCWGG 2 cut(s) 161, 375
PspEI GGTNACC 1 cut(s) 390
PspGI CCWGG 2 cut(s) 161, 375
PspN4I GGNNCC 2 cut(s) 142, 151
PspPI GGNCC 1 cut(s) 754
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 3 cut(s) 285, 422, 467
RsaNI GTAC 3 cut(s) 284, 421, 466
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 4 cut(s) 185, 333, 342, 624
Sau3AI GATC 6 cut(s) 94, 201, 310, 372, 410, 535
Sau96I GGNCC 1 cut(s) 754
SchI GAGTC 2 cut(s) 326, 688
ScrFI CCNGG 4 cut(s) 163, 377, 619, 857
SduI GDGCHC 3 cut(s) 305, 447, 510
SfaNI GCATC 2 cut(s) 639, 661
SfcI CTRYAG 2 cut(s) 610, 972
SfuI TTCGAA 1 cut(s) 725
SgrAI CRCCGGYG 1 cut(s) 404
SphI GCATGC 1 cut(s) 811
Sse9I AATT 1 cut(s) 1012
SspI AATATT 1 cut(s) 191
StyD4I CCNGG 4 cut(s) 161, 375, 617, 855
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 307, 331, 848, 1056
TaiI ACGT 2 cut(s) 495, 752
TaqI TCGA 7 cut(s) 97, 320, 371, 489, 585, 725, 819
TaqII GACCGA 1 cut(s) 882
TasI AATT 1 cut(s) 1012
TauI GCSGC 4 cut(s) 502, 669, 855, 980
TfiI GAWTC 4 cut(s) 63, 368, 775, 906
Tru1I TTAA 4 cut(s) 185, 333, 342, 624
Tru9I TTAA 4 cut(s) 185, 333, 342, 624
TscAI CASTG 4 cut(s) 268, 438, 964, 1012
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 7 cut(s) 23, 474, 971, 974, 990, 1043, 1046
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 338
TspRI CASTG 4 cut(s) 268, 438, 964, 1012
XceI RCATGY 1 cut(s) 811
XcmI CCANNNNNNNNNTGG 1 cut(s) 1036
XmiI GTMKAC 2 cut(s) 489, 927
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.