Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011736

Physical Location & Seq

Genomic Coordinates Reverse (-)

11354579 .. 11355586

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGAATTCTCATGTCTGCCTTCAAACAAGTAGTACAGCCGATGGTGAGCTTCCATGGCCCCGCGCTTACCAACATCAACATGGATCCATTTTTCCGGAGAAAAGATAAGGTTGTATCGATCGTAATGGGAGCCACCGGGACTGGGAAGTCCCGGCTTGCCATAGACCTCGCAATGCATTATCCGGCGGAGATTATAAACTCGGACAAAATGCAAGTCTACAAAGGCTTGGACATCGTCACCAACAAAGTCACGGAGGAAGAGTGTAAAGGCATACCTCACCATTTGATAGGCAAAGTTGATCCCAACTCAAATTTTACTGCCAATGATTTCAAGCACCATGCGTCGTTGGCCATCGAATCCATCTTGGAGCGTGACAGACTGCCTATCATTGCGGGTGGTTCGAATTCGTACATTGAAGCCTTGGTGGATAAACACTCGGAGTTTCGAATGAAGTACGAGTGTTGCTTTCTTTGGGTTGATGTGGCCATCCATGTGCTCCACTCTTTCGTGTCGAAGAGAGTGGATCGGATGGTGAAGGTGGGTTTGGTGGACGAGGTGAGGAAAATGTTTGACTCTACAACTGAAGCAGAATATACGCATGGAATCAGGCAAGCCATAGGCGTGCCTGAAATGCATGAGTATTTACACTGCGAAGCGAGTGGTAGTAACGATGATGAAACCCAAGAGAGGCTTCTTCAAGCAGCAATTTCTAAAATCAAAGAAAATACTTGCATTTTGGCGTATCGCCAATTGCAAAAGATCCGCCGGCTGCAAGCTCGGCGGGGTTGGAACATGCACCGCCTTGATGCCACGGAGGCGTTCTTAAAGCACCAAGGGGAGGCGGATCAAGCATGGGAAAAATTCGTGGCAACACCCGCCACGCGGATGGTGGATAAGTTCCTTTTGGACCCAATTCCCTCCATTCTTCCGACAGAGTCCGTCATCAAGCCACCGCGATTCTTTCCACGTCTATGCCGACAATGGCTGCCGCAACACGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009824 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

336

Amino Acids

38.26

Weight (kDa)

8.44

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	39 - 204	2.9e-10	Isopentenyl transferase
IPPT	PF01715	72 - 149	3e-24	IPP transferase
IPPT	PF01715	150 - 256	2e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23630 AT5G19040 AT5G19040 AT5G19040
fragaria_vesca	FvH4_4g14440
malus_domestica	MD13G1182800.v1.1 MD16G1183400.v1.1
prunus_persica	Prupe.1G150800_v2.0.a1
pyrus_communis	pycom13g15770 pycom16g15410
rosa_chinensis	RchiOBHm_Chr4g0418401
rosa_laevigata	RLG00000007870
rosa_multiflora	Rmu_sc0001266.1_g000013
rosa_roxburghii	Rroxscaffold_5G00361580
rosa_rugosa	Rorug04G0152700
rosa_samantha	Rh4BG216100 Rh4CG226100 Rh4DG212800
rosa_wichuraiana	Rw4G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
AasI	GACNNNNNNGTC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	3 cut(s)	65, 886, 958
AccIII	TCCGGA	1 cut(s)	96
AclWI	GGATC	6 cut(s)	80, 93, 296, 534, 757, 855
AcoI	YGGCCR	2 cut(s)	351, 486
AcsI	RAATTY	4 cut(s)	6, 313, 406, 863
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	36, 413, 458
AfiI	CCNNNNNNNGG	5 cut(s)	144, 690, 841, 885, 998
AgsI	TTSAA	4 cut(s)	25, 334, 419, 701
AjiI	CACGTC	1 cut(s)	971
AjuI	GAANNNNNNNTTGG	4 cut(s)	530, 562, 678, 710
AluBI	AGCT	2 cut(s)	51, 779
AluI	AGCT	2 cut(s)	51, 779
Alw21I	GWGCWC	1 cut(s)	501
AlwI	GGATC	6 cut(s)	80, 93, 296, 534, 757, 855
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	3 cut(s)	58, 351, 486
ApeKI	GCWGC	3 cut(s)	704, 772, 988
ApoI	RAATTY	4 cut(s)	6, 313, 406, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	59, 910
AsuC2I	CCSGG	2 cut(s)	139, 154
AsuHPI	GGTGA	5 cut(s)	58, 232, 272, 547, 571
AsuII	TTCGAA	2 cut(s)	404, 448
AvaII	GGWCC	1 cut(s)	910
BalI	TGGCCA	2 cut(s)	353, 488
BamHI	GGATCC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	716, 759, 975
BccI	CCATC	6 cut(s)	37, 362, 371, 497, 526, 883
BcnI	CCSGG	2 cut(s)	139, 154
BfaI	CTAG	1 cut(s)	1006
BglI	GCCNNNNNGGC	1 cut(s)	818
BisI	GCNGC	4 cut(s)	705, 773, 989, 992
BlsI	GCNGC	4 cut(s)	706, 774, 990, 993
Bme1390I	CCNGG	2 cut(s)	139, 154
Bme18I	GGWCC	1 cut(s)	910
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	2 cut(s)	59, 910
BmiI	GGNNCC	4 cut(s)	61, 87, 133, 912
BmrFI	CCNGG	2 cut(s)	139, 154
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	153
Bpu14I	TTCGAA	2 cut(s)	404, 448
BpuMI	CCSGG	2 cut(s)	139, 154
Bsa29I	ATCGAT	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	55, 423, 813, 835
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 690, 841, 885, 998
Bse118I	RCCGGY	1 cut(s)	768
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	2 cut(s)	180, 390
BseAI	TCCGGA	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	4 cut(s)	55, 423, 813, 835
BseGI	GGATG	3 cut(s)	489, 537, 894
BseLI	CCNNNNNNNGG	5 cut(s)	144, 690, 841, 885, 998
BseMI	GCAATG	2 cut(s)	180, 390
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	716, 759, 975
Bsh1236I	CGCG	3 cut(s)	65, 886, 958
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	60, 353, 488
BshVI	ATCGAT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	5 cut(s)	97, 138, 154, 185, 769
BslFI	GGGAC	2 cut(s)	136, 154
BslI	CCNNNNNNNGG	5 cut(s)	144, 690, 841, 885, 998
BsmFI	GGGAC	2 cut(s)	136, 154
BsnI	GGCC	3 cut(s)	60, 353, 488
Bsp119I	TTCGAA	2 cut(s)	404, 448
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	3 cut(s)	60, 353, 488
BspDI	ATCGAT	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	96
BspFNI	CGCG	3 cut(s)	65, 886, 958
BspLI	GGNNCC	4 cut(s)	61, 87, 133, 912
BspPI	GGATC	6 cut(s)	80, 93, 296, 534, 757, 855
BspT104I	TTCGAA	2 cut(s)	404, 448
BsrDI	GCAATG	2 cut(s)	180, 390
BsrFI	RCCGGY	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	768
BssECI	CCNNGG	4 cut(s)	55, 423, 813, 835
BssMI	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
BssT1I	CCWWGG	3 cut(s)	55, 423, 835
Bst4CI	ACNGT	1 cut(s)	1001
Bst6I	CTCTTC	2 cut(s)	255, 512
BstBI	TTCGAA	2 cut(s)	404, 448
BstC8I	GCNNGC	5 cut(s)	159, 615, 626, 770, 777
BstDSI	CCRYGG	2 cut(s)	55, 813
BstF5I	GGATG	3 cut(s)	489, 537, 894
BstFNI	CGCG	3 cut(s)	65, 886, 958
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	6 cut(s)	88, 123, 304, 529, 765, 850
BstMBI	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 350, 634, 781, 818, 851, 878
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	137, 152
BstUI	CGCG	3 cut(s)	65, 886, 958
BstV1I	GCAGC	3 cut(s)	716, 759, 975
BstX2I	RGATCY	2 cut(s)	85, 762
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstYI	RGATCY	2 cut(s)	85, 762
Bsu15I	ATCGAT	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	60, 353, 488
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	2 cut(s)	55, 813
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	3 cut(s)	489, 537, 894
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	5 cut(s)	159, 615, 626, 770, 777
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	768
Cfr13I	GGNCC	2 cut(s)	59, 910
ClaI	ATCGAT	1 cut(s)	119
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	35, 412, 457
CviAII	CATG	9 cut(s)	13, 56, 82, 341, 494, 602, 638, 796, 855
CviQI	GTAC	3 cut(s)	35, 412, 457
DpnI	GATC	6 cut(s)	87, 122, 303, 528, 764, 849
DpnII	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	351, 486
Eam1104I	CTCTTC	2 cut(s)	255, 512
EarI	CTCTTC	2 cut(s)	255, 512
EciI	GGCGGA	3 cut(s)	203, 755, 860
Eco130I	CCWWGG	3 cut(s)	55, 423, 835
Eco47I	GGWCC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	606
EcoRI	GAATTC	2 cut(s)	6, 406
EcoT14I	CCWWGG	3 cut(s)	55, 423, 835
EcoT22I	ATGCAT	2 cut(s)	180, 639
ErhI	CCWWGG	3 cut(s)	55, 423, 835
FaeI	CATG	9 cut(s)	16, 59, 85, 344, 497, 605, 641, 799, 858
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	2 cut(s)	136, 154
FatI	CATG	9 cut(s)	12, 55, 81, 340, 493, 601, 637, 795, 854
FauI	CCCGC	4 cut(s)	70, 388, 777, 886
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	705, 773, 989, 992
FokI	GGATG	3 cut(s)	476, 544, 901
Fsp4HI	GCNGC	4 cut(s)	705, 773, 989, 992
FspBI	CTAG	1 cut(s)	1006
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	705, 773, 989, 992
HaeIII	GGCC	3 cut(s)	60, 353, 488
HapII	CCGG	5 cut(s)	97, 138, 154, 185, 769
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	9 cut(s)	16, 59, 85, 344, 497, 605, 641, 799, 858
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	5 cut(s)	359, 575, 606, 938, 960
HpaII	CCGG	5 cut(s)	97, 138, 154, 185, 769
HphI	GGTGA	5 cut(s)	58, 232, 272, 547, 571
Hpy166II	GTNNAC	2 cut(s)	220, 553
Hpy188I	TCNGA	4 cut(s)	205, 442, 531, 933
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	220, 553
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	2 cut(s)	31, 532
HpyCH4III	ACNGT	1 cut(s)	1001
HpyCH4IV	ACGT	1 cut(s)	970
HpyCH4V	TGCA	7 cut(s)	178, 214, 637, 735, 757, 775, 799
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 350, 634, 781, 818, 851, 878
HpySE526I	ACGT	1 cut(s)	970
Hsp92II	CATG	9 cut(s)	16, 59, 85, 344, 497, 605, 641, 799, 858
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	768
KroNI	GCCGGC	1 cut(s)	770
Kzo9I	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
LmnI	GCTCC	3 cut(s)	131, 370, 504
LpnPI	CCDG	8 cut(s)	110, 129, 151, 167, 198, 595, 642, 782
Lsp1109I	GCAGC	3 cut(s)	716, 759, 975
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	1 cut(s)	1006
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	5 cut(s)	238, 250, 374, 668, 1001
MalI	GATC	6 cut(s)	87, 122, 303, 528, 764, 849
MboI	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
MboII	GAAGA	4 cut(s)	272, 529, 689, 920
MfeI	CAATTG	1 cut(s)	752
MflI	RGATCY	2 cut(s)	85, 762
MhlI	GDGCHC	1 cut(s)	501
MlsI	TGGCCA	2 cut(s)	353, 488
MluCI	AATT	7 cut(s)	6, 313, 406, 708, 752, 863, 915
MluNI	TGGCCA	2 cut(s)	353, 488
MlyI	GAGTC	2 cut(s)	569, 947
MmeI	TCCRAC	2 cut(s)	770, 956
MnlI	CCTC	9 cut(s)	179, 250, 288, 550, 555, 684, 811, 835, 931
Mox20I	TGGCCA	2 cut(s)	353, 488
Mph1103I	ATGCAT	2 cut(s)	180, 639
MroI	TCCGGA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	768
MscI	TGGCCA	2 cut(s)	353, 488
MseI	TTAA	1 cut(s)	827
MslI	CAYNNNNRTG	5 cut(s)	80, 494, 623, 887, 973
Msp20I	TGGCCA	2 cut(s)	353, 488
MspI	CCGG	5 cut(s)	97, 138, 154, 185, 769
MspR9I	CCNGG	2 cut(s)	139, 154
MunI	CAATTG	1 cut(s)	752
MvnI	CGCG	3 cut(s)	65, 886, 958
MwoI	GCNNNNNNNGC	7 cut(s)	57, 350, 634, 781, 818, 851, 878
NaeI	GCCGGC	1 cut(s)	770
NciI	CCSGG	2 cut(s)	139, 154
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
NgoMIV	GCCGGC	1 cut(s)	768
NlaIII	CATG	9 cut(s)	16, 59, 85, 344, 497, 605, 641, 799, 858
NlaIV	GGNNCC	4 cut(s)	61, 87, 133, 912
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	3 cut(s)	238, 250, 374
NsiI	ATGCAT	2 cut(s)	180, 639
NspI	RCATGY	1 cut(s)	799
NspV	TTCGAA	2 cut(s)	404, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	976
PdiI	GCCGGC	1 cut(s)	770
PfeI	GAWTC	3 cut(s)	359, 606, 960
PflFI	GACNNNGTC	2 cut(s)	236, 937
PkrI	GCNGC	4 cut(s)	706, 774, 990, 993
Ple19I	CGATCG	1 cut(s)	123
PleI	GAGTC	2 cut(s)	569, 946
PpsI	GAGTC	2 cut(s)	569, 946
PsiI	TTATAA	1 cut(s)	197
PspN4I	GGNNCC	4 cut(s)	61, 87, 133, 912
PspPI	GGNCC	2 cut(s)	59, 910
PsuI	RGATCY	2 cut(s)	85, 762
PsyI	GACNNNGTC	2 cut(s)	236, 937
PvuI	CGATCG	1 cut(s)	123
RsaI	GTAC	3 cut(s)	36, 413, 458
RsaNI	GTAC	3 cut(s)	35, 412, 457
RseI	CAYNNNNRTG	5 cut(s)	80, 494, 623, 887, 973
SaqAI	TTAA	1 cut(s)	827
SatI	GCNGC	4 cut(s)	705, 773, 989, 992
Sau3AI	GATC	6 cut(s)	85, 120, 301, 526, 762, 847
Sau96I	GGNCC	2 cut(s)	59, 910
SchI	GAGTC	2 cut(s)	569, 947
ScrFI	CCNGG	2 cut(s)	139, 154
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	8 cut(s)	53, 114, 171, 280, 543, 561, 781, 973
SfaNI	GCATC	1 cut(s)	799
SfuI	TTCGAA	2 cut(s)	404, 448
SinI	GGWCC	1 cut(s)	910
SmiMI	CAYNNNNRTG	5 cut(s)	80, 494, 623, 887, 973
Sse9I	AATT	7 cut(s)	6, 313, 406, 708, 752, 863, 915
SspMI	CTAG	1 cut(s)	1006
StyD4I	CCNGG	2 cut(s)	137, 152
StyI	CCWWGG	3 cut(s)	55, 423, 835
TaaI	ACNGT	1 cut(s)	1001
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	5 cut(s)	119, 357, 404, 448, 515
TasI	AATT	7 cut(s)	6, 313, 406, 708, 752, 863, 915
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	3 cut(s)	359, 606, 960
Tru1I	TTAA	1 cut(s)	827
Tru9I	TTAA	1 cut(s)	827
TscAI	CASTG	1 cut(s)	656
TseFI	GTSAC	3 cut(s)	238, 250, 374
TseI	GCWGC	3 cut(s)	704, 772, 988
Tsp45I	GTSAC	3 cut(s)	238, 250, 374
TspDTI	ATGAA	2 cut(s)	467, 693
TspGWI	ACGGA	3 cut(s)	269, 830, 931
TspRI	CASTG	1 cut(s)	656
Tth111I	GACNNNGTC	2 cut(s)	236, 937
VpaK11BI	GGWCC	1 cut(s)	910
XapI	RAATTY	4 cut(s)	6, 313, 406, 863
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 889
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	1006
Zsp2I	ATGCAT	2 cut(s)	180, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.