Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011736

Physical Location & Seq

Genomic Coordinates Reverse (-)

15761179 .. 15762183

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1183400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGAATTCTCATGTCTGCCTGCAAACAAGTAGTACAGCCGATGGTGAGCTTCCATGGCCCCGCGCTCACCAACATCAACATGGATCCATTTTTCCGGAGAAAAGATAAGGTTGTGATCGTAATGGGAGCCACCGGGACTGGCAAGTCCCGGCTTGCCATAGACCTCGCAATGCATTATCCGGCGGAGATTATAAACTCGGACAAAATGCAAGTCTACAAAGGCTTGGACATCGTCACCAACAAAGTCACTGAGGAAGAGTGTAAAGGCATACCCCACCATTTGATAGGCAAATTCGATCCCAACTCAAATTTTACTGCCAATGATTTCAAGAACCATGCATCGTTGGCCATCGAATCCATCTTGGAGCGTGACAGACTCCCGATCATTGCGGGTGGTTCGAATTCGTACATTGAAGCCTTGGTGGATAAACACTCGGAGTTTCGAATGAAGTACGAGTGTTGCTTTCTTTGGGTTGATGTGGCCATCCCTGTGCTCCACTCTTTCGTGTCGAAGAGAGTGGATCGGATGGTGAAGGTGGGTTTGGTGGACGAGGTGAGGAAAATGTTTGACTCTACAACTGAAGCAGAATATACGAATGGAATCAGGCAAGCCATAGGCGTGCCTGAAATGCATGAGTATTTACACTGTGAAGCGAGTGGTAGTAACGATGATGAAACCCAAGAGAGGCTTCTTCAAGCAGCAATTTCTAAAATCAAAGAAAATACTTGCATTTTGGCGTATCGCCAATTGCAAAAGATCCGCCGGCTGCAAGCTCGGCGGGGTTGGAACATGCACCGCCTTGATGCCACGGAAGTGTTCTTAAAGCACCAAGGGGAGGCGGATCAAGCATGGGAGAAATTCGTGGCAACACCCGCCACGCGGATGGTGGATAAGTTCCTTTTGGACCCAATTCCCTCCATTCTTCCGACAGAGGCCATCATCACGCCACCGCGATTCTTTCCACGTCTATGCCGACAGTGGCTGCCGCAACACGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009824 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

335

Amino Acids

38.09

Weight (kDa)

8.11

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	37 - 203	3.8e-10	Isopentenyl transferase
IPPT	PF01715	71 - 148	6.6e-24	IPP transferase
IPPT	PF01715	149 - 255	2.9e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23630 AT5G19040 AT5G19040 AT5G19040
fragaria_vesca	FvH4_4g14440
malus_domestica	MD13G1182800.v1.1 MD16G1183400.v1.1
prunus_persica	Prupe.1G150800_v2.0.a1
pyrus_communis	pycom13g15770 pycom16g15410
rosa_chinensis	RchiOBHm_Chr4g0418401
rosa_laevigata	RLG00000007870
rosa_multiflora	Rmu_sc0001266.1_g000013
rosa_roxburghii	Rroxscaffold_5G00361580
rosa_rugosa	Rorug04G0152700
rosa_samantha	Rh4BG216100 Rh4CG226100 Rh4DG212800
rosa_wichuraiana	Rw4G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AasI	GACNNNNNNGTC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	65, 883, 955
AccIII	TCCGGA	1 cut(s)	96
AclWI	GGATC	6 cut(s)	80, 93, 293, 531, 754, 852
AcoI	YGGCCR	2 cut(s)	348, 483
AcsI	RAATTY	5 cut(s)	6, 293, 310, 403, 860
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	3 cut(s)	36, 410, 455
AfiI	CCNNNNNNNGG	4 cut(s)	687, 838, 882, 995
AgsI	TTSAA	3 cut(s)	331, 416, 698
AjiI	CACGTC	1 cut(s)	968
AjuI	GAANNNNNNNTTGG	4 cut(s)	527, 559, 675, 707
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	2 cut(s)	51, 776
AluI	AGCT	2 cut(s)	51, 776
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	6 cut(s)	80, 93, 293, 531, 754, 852
AlwNI	CAGNNNCTG	1 cut(s)	985
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	4 cut(s)	58, 348, 483, 936
ApeKI	GCWGC	3 cut(s)	701, 769, 985
ApoI	RAATTY	5 cut(s)	6, 293, 310, 403, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	59, 907
AsuC2I	CCSGG	2 cut(s)	136, 151
AsuHPI	GGTGA	5 cut(s)	58, 61, 229, 544, 568
AsuII	TTCGAA	2 cut(s)	401, 445
AvaII	GGWCC	1 cut(s)	907
BalI	TGGCCA	2 cut(s)	350, 485
BamHI	GGATCC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	713, 756, 972
BccI	CCATC	7 cut(s)	37, 359, 368, 494, 523, 880, 947
BcnI	CCSGG	2 cut(s)	136, 151
BfaI	CTAG	1 cut(s)	1003
BisI	GCNGC	4 cut(s)	702, 770, 986, 989
BlsI	GCNGC	4 cut(s)	703, 771, 987, 990
Bme1390I	CCNGG	2 cut(s)	136, 151
Bme18I	GGWCC	1 cut(s)	907
BmgBI	CACGTC	1 cut(s)	968
BmgT120I	GGNCC	2 cut(s)	59, 907
BmiI	GGNNCC	4 cut(s)	61, 87, 130, 909
BmrFI	CCNGG	2 cut(s)	136, 151
BmsI	GCATC	2 cut(s)	350, 796
Bpu14I	TTCGAA	2 cut(s)	401, 445
BpuMI	CCSGG	2 cut(s)	136, 151
BsaJI	CCNNGG	4 cut(s)	55, 420, 810, 832
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	4 cut(s)	687, 838, 882, 995
Bse118I	RCCGGY	1 cut(s)	765
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	2 cut(s)	177, 387
BseAI	TCCGGA	1 cut(s)	96
BseDI	CCNNGG	4 cut(s)	55, 420, 810, 832
BseGI	GGATG	3 cut(s)	486, 534, 891
BseLI	CCNNNNNNNGG	4 cut(s)	687, 838, 882, 995
BseMI	GCAATG	2 cut(s)	177, 387
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	713, 756, 972
Bsh1236I	CGCG	3 cut(s)	65, 883, 955
BshFI	GGCC	4 cut(s)	60, 350, 485, 938
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	5 cut(s)	97, 135, 151, 182, 766
BslFI	GGGAC	2 cut(s)	133, 151
BslI	CCNNNNNNNGG	4 cut(s)	687, 838, 882, 995
BsmFI	GGGAC	2 cut(s)	133, 151
BsnI	GGCC	4 cut(s)	60, 350, 485, 938
Bsp119I	TTCGAA	2 cut(s)	401, 445
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	4 cut(s)	60, 350, 485, 938
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	96
BspFNI	CGCG	3 cut(s)	65, 883, 955
BspLI	GGNNCC	4 cut(s)	61, 87, 130, 909
BspPI	GGATC	6 cut(s)	80, 93, 293, 531, 754, 852
BspT104I	TTCGAA	2 cut(s)	401, 445
BsrDI	GCAATG	2 cut(s)	177, 387
BsrFI	RCCGGY	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	765
BssECI	CCNNGG	4 cut(s)	55, 420, 810, 832
BssMI	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
BssT1I	CCWWGG	3 cut(s)	55, 420, 832
Bst4CI	ACNGT	3 cut(s)	650, 981, 998
Bst6I	CTCTTC	2 cut(s)	252, 509
BstBI	TTCGAA	2 cut(s)	401, 445
BstC8I	GCNNGC	6 cut(s)	22, 156, 612, 623, 767, 774
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	2 cut(s)	55, 810
BstF5I	GGATG	3 cut(s)	486, 534, 891
BstFNI	CGCG	3 cut(s)	65, 883, 955
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	7 cut(s)	88, 120, 301, 387, 526, 762, 847
BstMBI	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 347, 631, 778, 848, 875
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	134, 149
BstUI	CGCG	3 cut(s)	65, 883, 955
BstV1I	GCAGC	3 cut(s)	713, 756, 972
BstX2I	RGATCY	2 cut(s)	85, 759
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstYI	RGATCY	2 cut(s)	85, 759
BsuRI	GGCC	4 cut(s)	60, 350, 485, 938
BtgI	CCRYGG	2 cut(s)	55, 810
BtrI	CACGTC	1 cut(s)	968
BtsCI	GGATG	3 cut(s)	486, 534, 891
BtsIMutI	CAGTG	3 cut(s)	249, 646, 986
Cac8I	GCNNGC	6 cut(s)	22, 156, 612, 623, 767, 774
CaiI	CAGNNNCTG	1 cut(s)	985
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	59, 907
Csp6I	GTAC	3 cut(s)	35, 409, 454
CviAII	CATG	7 cut(s)	13, 56, 82, 338, 635, 793, 852
CviQI	GTAC	3 cut(s)	35, 409, 454
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	7 cut(s)	87, 119, 300, 386, 525, 761, 846
DpnII	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	2 cut(s)	348, 483
Eam1104I	CTCTTC	2 cut(s)	252, 509
EarI	CTCTTC	2 cut(s)	252, 509
EciI	GGCGGA	3 cut(s)	200, 752, 857
Eco130I	CCWWGG	3 cut(s)	55, 420, 832
Eco47I	GGWCC	1 cut(s)	907
Eco57I	CTGAAG	1 cut(s)	603
EcoRI	GAATTC	2 cut(s)	6, 403
EcoT14I	CCWWGG	3 cut(s)	55, 420, 832
EcoT22I	ATGCAT	3 cut(s)	177, 343, 636
ErhI	CCWWGG	3 cut(s)	55, 420, 832
FaeI	CATG	7 cut(s)	16, 59, 85, 341, 638, 796, 855
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	2 cut(s)	133, 151
FatI	CATG	7 cut(s)	12, 55, 81, 337, 634, 792, 851
FauI	CCCGC	4 cut(s)	70, 385, 774, 883
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	702, 770, 986, 989
FokI	GGATG	3 cut(s)	473, 541, 898
Fsp4HI	GCNGC	4 cut(s)	702, 770, 986, 989
FspBI	CTAG	1 cut(s)	1003
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	702, 770, 986, 989
HaeIII	GGCC	4 cut(s)	60, 350, 485, 938
HapII	CCGG	5 cut(s)	97, 135, 151, 182, 766
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	7 cut(s)	16, 59, 85, 341, 638, 796, 855
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	5 cut(s)	356, 378, 572, 603, 957
HpaII	CCGG	5 cut(s)	97, 135, 151, 182, 766
HphI	GGTGA	5 cut(s)	58, 61, 229, 544, 568
Hpy166II	GTNNAC	2 cut(s)	217, 550
Hpy188I	TCNGA	4 cut(s)	202, 439, 528, 930
Hpy188III	TCNNGA	3 cut(s)	97, 331, 382
Hpy8I	GTNNAC	2 cut(s)	217, 550
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	3 cut(s)	650, 981, 998
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	9 cut(s)	24, 175, 211, 341, 634, 732, 754, 772, 796
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 347, 631, 778, 848, 875
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	967
Hsp92II	CATG	7 cut(s)	16, 59, 85, 341, 638, 796, 855
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	765
KroNI	GCCGGC	1 cut(s)	767
Kzo9I	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
LmnI	GCTCC	3 cut(s)	128, 367, 501
Lsp1109I	GCAGC	3 cut(s)	713, 756, 972
LweI	GCATC	2 cut(s)	350, 796
MaeI	CTAG	1 cut(s)	1003
MaeII	ACGT	1 cut(s)	967
MaeIII	GTNAC	5 cut(s)	235, 247, 371, 665, 998
MalI	GATC	7 cut(s)	87, 119, 300, 386, 525, 761, 846
MboI	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
MboII	GAAGA	4 cut(s)	269, 526, 686, 917
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	2 cut(s)	85, 759
MhlI	GDGCHC	1 cut(s)	498
MlsI	TGGCCA	2 cut(s)	350, 485
MluCI	AATT	8 cut(s)	6, 293, 310, 403, 705, 749, 860, 912
MluNI	TGGCCA	2 cut(s)	350, 485
MlyI	GAGTC	2 cut(s)	372, 566
MmeI	TCCRAC	2 cut(s)	767, 953
MnlI	CCTC	8 cut(s)	176, 247, 547, 552, 681, 832, 928, 928
Mox20I	TGGCCA	2 cut(s)	350, 485
Mph1103I	ATGCAT	3 cut(s)	177, 343, 636
MroI	TCCGGA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	765
MscI	TGGCCA	2 cut(s)	350, 485
MseI	TTAA	1 cut(s)	824
MslI	CAYNNNNRTG	6 cut(s)	80, 491, 620, 815, 884, 970
Msp20I	TGGCCA	2 cut(s)	350, 485
MspI	CCGG	5 cut(s)	97, 135, 151, 182, 766
MspR9I	CCNGG	2 cut(s)	136, 151
MunI	CAATTG	1 cut(s)	749
MvnI	CGCG	3 cut(s)	65, 883, 955
MwoI	GCNNNNNNNGC	6 cut(s)	57, 347, 631, 778, 848, 875
NaeI	GCCGGC	1 cut(s)	767
NciI	CCSGG	2 cut(s)	136, 151
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
NgoMIV	GCCGGC	1 cut(s)	765
NlaIII	CATG	7 cut(s)	16, 59, 85, 341, 638, 796, 855
NlaIV	GGNNCC	4 cut(s)	61, 87, 130, 909
NmeAIII	GCCGAG	1 cut(s)	757
NmuCI	GTSAC	3 cut(s)	235, 247, 371
NsiI	ATGCAT	3 cut(s)	177, 343, 636
NspI	RCATGY	1 cut(s)	796
NspV	TTCGAA	2 cut(s)	401, 445
OliI	CACNNNNGTG	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	973
PdiI	GCCGGC	1 cut(s)	767
PfeI	GAWTC	3 cut(s)	356, 603, 957
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	703, 771, 987, 990
PleI	GAGTC	2 cut(s)	372, 566
PpsI	GAGTC	2 cut(s)	372, 566
PsiI	TTATAA	1 cut(s)	194
PspN4I	GGNNCC	4 cut(s)	61, 87, 130, 909
PspPI	GGNCC	2 cut(s)	59, 907
PstNI	CAGNNNCTG	1 cut(s)	985
PsuI	RGATCY	2 cut(s)	85, 759
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	3 cut(s)	36, 410, 455
RsaNI	GTAC	3 cut(s)	35, 409, 454
RseI	CAYNNNNRTG	6 cut(s)	80, 491, 620, 815, 884, 970
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	4 cut(s)	702, 770, 986, 989
Sau3AI	GATC	7 cut(s)	85, 117, 298, 384, 523, 759, 844
Sau96I	GGNCC	2 cut(s)	59, 907
SchI	GAGTC	2 cut(s)	372, 566
ScrFI	CCNGG	2 cut(s)	136, 151
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	7 cut(s)	53, 114, 168, 540, 558, 778, 970
SfaNI	GCATC	2 cut(s)	350, 796
SfuI	TTCGAA	2 cut(s)	401, 445
SinI	GGWCC	1 cut(s)	907
SmiMI	CAYNNNNRTG	6 cut(s)	80, 491, 620, 815, 884, 970
Sse9I	AATT	8 cut(s)	6, 293, 310, 403, 705, 749, 860, 912
SspMI	CTAG	1 cut(s)	1003
StyD4I	CCNGG	2 cut(s)	134, 149
StyI	CCWWGG	3 cut(s)	55, 420, 832
TaaI	ACNGT	3 cut(s)	650, 981, 998
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	5 cut(s)	297, 354, 401, 445, 512
TasI	AATT	8 cut(s)	6, 293, 310, 403, 705, 749, 860, 912
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	991
TfiI	GAWTC	3 cut(s)	356, 603, 957
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	3 cut(s)	256, 653, 986
TseFI	GTSAC	3 cut(s)	235, 247, 371
TseI	GCWGC	3 cut(s)	701, 769, 985
Tsp45I	GTSAC	3 cut(s)	235, 247, 371
TspDTI	ATGAA	2 cut(s)	464, 690
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	3 cut(s)	256, 653, 986
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	907
XapI	RAATTY	5 cut(s)	6, 293, 310, 403, 860
XceI	RCATGY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 886
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	1003
Zsp2I	ATGCAT	3 cut(s)	177, 343, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.