RchiOBHm_Chr4g0418401

Adenylate isopentenyltransferase 5

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
43841622 .. 43842678
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38839

Sequence Viewer

Length: 993 bp
ATGCAAACTCTTTTCTCCATAGCTGCCTGCCAACAAGTAGTTCACATACAGCCGATGGTAAGATTCCAAAACCCGCCAGCCGGACTATCCATTGATCGATTTTTCAGTCGGAATAAGGATAAGGTTGTGATAGTAATGGGAGCCACGGGAACCGGAAAGTCCAGGCTTGCCATAGACCTTGCATTAAAATATTCGGCCGAGATCATAAACTCGGATAAAATGCAAGTCTATAAAGGTTTGGACACCCTCACCAACAAGGTCACTGAGGAGGAGTGCAAAGGCGTACCACATCACCTGTTGGGCACAGTGGATCCTGAGTCGAACTTCACAGTTAATGATTTTAAGCATCATGCGTCTTTGGCCATTGAATCGATCCTGGAGCGTGACCGGTTACCTATCATCGCCGGTGGGTCAAACTCGTACATAGAGGCACTGGTGGACGAGCACCCCGAGTTTCGGAGGAGGTACGAGTGCTGCTTTCTTTGGGTCGACGTAACGCCGCGGGTGCTCAACTCGTTTGTGTCGGAGCGAGTTGATCGGATGGTGGAGGTGGGTGGTCTGGTGGACGAGGTGAGGAGAATGTTCGACCCAACAGCCGACGAGGAGGACTATAGCACCGGGATTAAGAAAGCTATCGGAGTTCCAGAGATGCATCATTACTTGCGCGGCGAAGCGTGTGGCAACGATGAAGAGACTCAAGAAGCGCTGTTGATGGAAGCTATTTCGAACATCAAGAAGAATACTCGCACGTTGGCCCATCGCCAACTGCAAAAGATTCACCGGCTGCGGAGCAAGTGGAACTGGAGCATGCACCGCCTCGACGCCACCGAAGCTTTCTTGAACCGCCGTCGCGGCCGGGAGGGAGACCGAGTGTGGGAGAAGCAAGTTGCGAGACCCGCCACAGTAATCGTCAGTAAGTTCCTCGTAGACCCAATGTCAACCATTCTTCCTCATGACACTACCTTTTGGCTGCTGCAACACGGTAGATTATGA

Protein Analysis

330

Amino Acids

37.74

Weight (kDa)

6.9

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 41 - 149 3.5e-09 Isopentenyl transferase
IPPT PF01715 75 - 149 5.3e-23 IPP transferase
IPPT PF01715 152 - 257 2e-14 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011736)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 489, 927
AccII CGCG 3 cut(s) 502, 666, 852
AciI CCGC 9 cut(s) 74, 500, 502, 666, 787, 814, 844, 852, 897
AclWI GGATC 3 cut(s) 305, 318, 367
AcoI YGGCCR 3 cut(s) 195, 360, 853
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 3 cut(s) 285, 422, 467
AfeI AGCGCT 1 cut(s) 705
AfiI CCNNNNNNNGG 3 cut(s) 80, 456, 874
AgeI ACCGGT 1 cut(s) 387
AgsI TTSAA 2 cut(s) 368, 841
AhdI GACNNNNNGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 161, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 4 cut(s) 23, 632, 719, 833
AluI AGCT 4 cut(s) 23, 632, 719, 833
Alw21I GWGCWC 2 cut(s) 447, 510
Alw26I GTCTC 3 cut(s) 686, 858, 886
AlwI GGATC 3 cut(s) 305, 318, 367
Ama87I CYCGRG 1 cut(s) 449
Aor51HI AGCGCT 1 cut(s) 705
AoxI GGCC 4 cut(s) 195, 360, 753, 853
ApeKI GCWGC 5 cut(s) 23, 474, 784, 970, 973
AsiGI ACCGGT 1 cut(s) 387
AspLEI GCGC 2 cut(s) 666, 706
AspS9I GGNCC 1 cut(s) 754
AsuC2I CCSGG 2 cut(s) 619, 857
AsuHPI GGTGA 4 cut(s) 241, 284, 583, 770
AsuII TTCGAA 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 362
BamHI GGATCC 1 cut(s) 310
Bbv12I GWGCWC 2 cut(s) 447, 510
BbvI GCAGC 5 cut(s) 10, 461, 771, 957, 960
BccI CCATC 4 cut(s) 49, 535, 706, 765
BceAI ACGGC 1 cut(s) 831
BciT130I CCWGG 2 cut(s) 163, 377
BcnI CCSGG 2 cut(s) 619, 857
BcoDI GTCTC 3 cut(s) 686, 858, 886
BfmI CTRYAG 1 cut(s) 610
BfoI RGCGCY 1 cut(s) 707
BglI GCCNNNNNGGC 1 cut(s) 852
BisI GCNGC 8 cut(s) 24, 475, 500, 667, 785, 853, 971, 974
BlsI GCNGC 8 cut(s) 25, 476, 501, 668, 786, 854, 972, 975
Bme1390I CCNGG 4 cut(s) 163, 377, 619, 857
BmeRI GACNNNNNGTC 1 cut(s) 934
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 754
BmiI GGNNCC 3 cut(s) 142, 151, 312
BmrFI CCNGG 4 cut(s) 163, 377, 619, 857
BmsI GCATC 3 cut(s) 355, 639, 661
BpmI CTGGAG 2 cut(s) 398, 823
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 681
BpuMI CCSGG 2 cut(s) 619, 857
Bsa29I ATCGAT 2 cut(s) 97, 371
BsaHI GRCGYC 1 cut(s) 822
BsaI GGTCTC 2 cut(s) 858, 886
BsaJI CCNNGG 2 cut(s) 144, 500
BsaWI WCCGGW 2 cut(s) 152, 387
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 456, 874
Bse118I RCCGGY 3 cut(s) 387, 404, 780
Bse1I ACTGG 2 cut(s) 438, 806
BseBI CCWGG 2 cut(s) 163, 377
BseCI ATCGAT 2 cut(s) 97, 371
BseDI CCNNGG 2 cut(s) 144, 500
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 80, 456, 874
BseMII CTCAG 2 cut(s) 255, 306
BseNI ACTGG 2 cut(s) 438, 806
BseRI GAGGAG 5 cut(s) 281, 284, 475, 589, 617
BseSI GKGCMC 1 cut(s) 305
BseX3I CGGCCG 2 cut(s) 195, 853
BseXI GCAGC 5 cut(s) 10, 461, 771, 957, 960
Bsh1236I CGCG 3 cut(s) 502, 666, 852
Bsh1285I CGRYCG 2 cut(s) 198, 856
BshFI GGCC 4 cut(s) 197, 362, 755, 855
BshTI ACCGGT 1 cut(s) 387
BshVI ATCGAT 2 cut(s) 97, 371
BsiEI CGRYCG 2 cut(s) 198, 856
BsiHKAI GWGCWC 2 cut(s) 447, 510
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 7 cut(s) 81, 153, 388, 405, 618, 781, 856
BslI CCNNNNNNNGG 3 cut(s) 80, 456, 874
BsmAI GTCTC 3 cut(s) 686, 858, 886
BsnI GGCC 4 cut(s) 197, 362, 755, 855
Bso31I GGTCTC 2 cut(s) 858, 886
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 3 cut(s) 305, 447, 510
Bsp143I GATC 5 cut(s) 94, 201, 310, 372, 535
BspACI CCGC 9 cut(s) 74, 500, 502, 666, 787, 814, 844, 852, 897
BspANI GGCC 4 cut(s) 197, 362, 755, 855
BspCNI CTCAG 2 cut(s) 256, 307
BspDI ATCGAT 2 cut(s) 97, 371
BspFNI CGCG 3 cut(s) 502, 666, 852
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 142, 151, 312
BspPI GGATC 3 cut(s) 305, 318, 367
BspT104I TTCGAA 1 cut(s) 725
BspTNI GGTCTC 2 cut(s) 858, 886
BsrFI RCCGGY 3 cut(s) 387, 404, 780
BsrI ACTGG 2 cut(s) 438, 806
BssAI RCCGGY 3 cut(s) 387, 404, 780
BssECI CCNNGG 2 cut(s) 144, 500
BssMI GATC 5 cut(s) 94, 201, 310, 372, 535
BssNI GRCGYC 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 163, 377
Bst4CI ACNGT 4 cut(s) 307, 331, 904, 983
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 28, 78, 168, 809
BstDEI CTNAG 2 cut(s) 264, 315
BstDSI CCRYGG 2 cut(s) 144, 500
BstEII GGTNACC 1 cut(s) 390
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 3 cut(s) 502, 666, 852
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 2 cut(s) 666, 706
BstKTI GATC 5 cut(s) 97, 204, 313, 375, 538
BstMAI GTCTC 3 cut(s) 686, 858, 886
BstMBI GATC 5 cut(s) 94, 201, 310, 372, 535
BstMCI CGRYCG 2 cut(s) 198, 856
BstMWI GCNNNNNNNGC 6 cut(s) 359, 505, 813, 830, 852, 896
BstNI CCWGG 2 cut(s) 163, 377
BstNSI RCATGY 1 cut(s) 811
BstPI GGTNACC 1 cut(s) 390
BstSCI CCNGG 4 cut(s) 161, 375, 617, 855
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 3 cut(s) 502, 666, 852
BstV1I GCAGC 5 cut(s) 10, 461, 771, 957, 960
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZI CGGCCG 2 cut(s) 195, 853
Bsu15I ATCGAT 2 cut(s) 97, 371
BsuRI GGCC 4 cut(s) 197, 362, 755, 855
BsuTUI ATCGAT 2 cut(s) 97, 371
BtgI CCRYGG 2 cut(s) 144, 500
BtgZI GCGATG 2 cut(s) 385, 743
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 261, 312, 431
Cac8I GCNNGC 4 cut(s) 28, 78, 168, 809
CciI TCATGA 1 cut(s) 952
CfoI GCGC 2 cut(s) 666, 706
Cfr10I RCCGGY 3 cut(s) 387, 404, 780
Cfr13I GGNCC 1 cut(s) 754
Cfr42I CCGCGG 1 cut(s) 503
ClaI ATCGAT 2 cut(s) 97, 371
CseI GACGC 2 cut(s) 342, 830
Csp6I GTAC 3 cut(s) 284, 421, 466
CspAI ACCGGT 1 cut(s) 387
CviAII CATG 3 cut(s) 350, 808, 953
CviQI GTAC 3 cut(s) 284, 421, 466
DdeI CTNAG 2 cut(s) 264, 315
DpnI GATC 5 cut(s) 96, 203, 312, 374, 537
DpnII GATC 5 cut(s) 94, 201, 310, 372, 535
DriI GACNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 3 cut(s) 195, 360, 853
EagI CGGCCG 2 cut(s) 195, 853
Eam1104I CTCTTC 1 cut(s) 684
Eam1105I GACNNNNNGTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 684
EclXI CGGCCG 2 cut(s) 195, 853
Eco31I GGTCTC 2 cut(s) 858, 886
Eco47III AGCGCT 1 cut(s) 705
Eco52I CGGCCG 2 cut(s) 195, 853
Eco88I CYCGRG 1 cut(s) 449
Eco91I GGTNACC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 161, 375
EcoT22I ATGCAT 1 cut(s) 654
FaeI CATG 3 cut(s) 353, 811, 956
FatI CATG 3 cut(s) 349, 807, 952
FauI CCCGC 3 cut(s) 81, 495, 904
FblI GTMKAC 2 cut(s) 489, 927
Fnu4HI GCNGC 8 cut(s) 24, 475, 500, 667, 785, 853, 971, 974
FokI GGATG 1 cut(s) 553
Fsp4HI GCNGC 8 cut(s) 24, 475, 500, 667, 785, 853, 971, 974
GlaI GCGC 2 cut(s) 665, 705
GluI GCNGC 8 cut(s) 24, 475, 500, 667, 785, 853, 971, 974
GsuI CTGGAG 2 cut(s) 398, 823
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 4 cut(s) 197, 362, 755, 855
HapII CCGG 7 cut(s) 81, 153, 388, 405, 618, 781, 856
HgaI GACGC 2 cut(s) 342, 830
HhaI GCGC 2 cut(s) 666, 706
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 3 cut(s) 353, 811, 956
Hin6I GCGC 2 cut(s) 664, 704
HinP1I GCGC 2 cut(s) 664, 704
HincII GTYRAC 2 cut(s) 490, 939
HindII GTYRAC 2 cut(s) 490, 939
HindIII AAGCTT 1 cut(s) 831
HinfI GANTC 5 cut(s) 63, 317, 368, 694, 775
HpaII CCGG 7 cut(s) 81, 153, 388, 405, 618, 781, 856
HphI GGTGA 4 cut(s) 241, 284, 583, 770
Hpy166II GTNNAC 6 cut(s) 43, 439, 490, 565, 928, 939
Hpy188I TCNGA 6 cut(s) 111, 214, 459, 526, 540, 638
Hpy188III TCNNGA 6 cut(s) 314, 644, 698, 733, 838, 953
Hpy8I GTNNAC 6 cut(s) 43, 439, 490, 565, 928, 939
Hpy99I CGWCG 4 cut(s) 494, 602, 824, 852
HpyCH4III ACNGT 4 cut(s) 307, 331, 904, 983
HpyCH4IV ACGT 2 cut(s) 492, 749
HpyCH4V TGCA 8 cut(s) 4, 182, 223, 276, 652, 769, 811, 976
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 505, 813, 830, 852, 896
HpyF3I CTNAG 2 cut(s) 264, 315
HpySE526I ACGT 2 cut(s) 492, 749
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 3 cut(s) 353, 811, 956
HspAI GCGC 2 cut(s) 664, 704
KspI CCGCGG 1 cut(s) 503
Kzo9I GATC 5 cut(s) 94, 201, 310, 372, 535
LmnI GCTCC 5 cut(s) 140, 379, 526, 789, 804
Lsp1109I GCAGC 5 cut(s) 10, 461, 771, 957, 960
LweI GCATC 3 cut(s) 355, 639, 661
MaeII ACGT 2 cut(s) 492, 749
MaeIII GTNAC 4 cut(s) 259, 383, 390, 493
MalI GATC 5 cut(s) 96, 203, 312, 374, 537
MboI GATC 5 cut(s) 94, 201, 310, 372, 535
MboII GAAGA 3 cut(s) 701, 748, 938
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 3 cut(s) 305, 447, 510
MlsI TGGCCA 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 2 cut(s) 326, 688
MmeI TCCRAC 2 cut(s) 89, 504
Mox20I TGGCCA 1 cut(s) 362
Mph1103I ATGCAT 1 cut(s) 654
MscI TGGCCA 1 cut(s) 362
MseI TTAA 4 cut(s) 185, 333, 342, 624
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 7 cut(s) 81, 153, 388, 405, 618, 781, 856
MspR9I CCNGG 4 cut(s) 163, 377, 619, 857
MvaI CCWGG 2 cut(s) 163, 377
MvnI CGCG 3 cut(s) 502, 666, 852
MwoI GCNNNNNNNGC 6 cut(s) 359, 505, 813, 830, 852, 896
NciI CCSGG 2 cut(s) 619, 857
NdeII GATC 5 cut(s) 94, 201, 310, 372, 535
NlaIII CATG 3 cut(s) 353, 811, 956
NlaIV GGNNCC 3 cut(s) 142, 151, 312
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 259, 383
NsiI ATGCAT 1 cut(s) 654
NspI RCATGY 1 cut(s) 811
NspV TTCGAA 1 cut(s) 725
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 1 cut(s) 952
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 825
PfeI GAWTC 3 cut(s) 63, 368, 775
PfoI TCCNGGA 1 cut(s) 375
PinAI ACCGGT 1 cut(s) 387
PkrI GCNGC 8 cut(s) 25, 476, 501, 668, 786, 854, 972, 975
PleI GAGTC 2 cut(s) 325, 688
PpsI GAGTC 2 cut(s) 325, 688
Psp6I CCWGG 2 cut(s) 161, 375
PspEI GGTNACC 1 cut(s) 390
PspGI CCWGG 2 cut(s) 161, 375
PspN4I GGNNCC 3 cut(s) 142, 151, 312
PspPI GGNCC 1 cut(s) 754
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 3 cut(s) 285, 422, 467
RsaNI GTAC 3 cut(s) 284, 421, 466
SacII CCGCGG 1 cut(s) 503
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 4 cut(s) 185, 333, 342, 624
SatI GCNGC 8 cut(s) 24, 475, 500, 667, 785, 853, 971, 974
Sau3AI GATC 5 cut(s) 94, 201, 310, 372, 535
Sau96I GGNCC 1 cut(s) 754
SchI GAGTC 2 cut(s) 326, 688
ScrFI CCNGG 4 cut(s) 163, 377, 619, 857
SduI GDGCHC 3 cut(s) 305, 447, 510
SfaNI GCATC 3 cut(s) 355, 639, 661
SfcI CTRYAG 1 cut(s) 610
Sfr303I CCGCGG 1 cut(s) 503
SfuI TTCGAA 1 cut(s) 725
SgrAI CRCCGGYG 1 cut(s) 404
SgrBI CCGCGG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
SphI GCATGC 1 cut(s) 811
SsiI CCGC 9 cut(s) 74, 500, 502, 666, 787, 814, 844, 852, 897
SspI AATATT 1 cut(s) 191
StyD4I CCNGG 4 cut(s) 161, 375, 617, 855
TaaI ACNGT 4 cut(s) 307, 331, 904, 983
TaiI ACGT 2 cut(s) 495, 752
TaqI TCGA 7 cut(s) 97, 320, 371, 489, 585, 725, 819
TaqII GACCGA 1 cut(s) 882
TauI GCSGC 3 cut(s) 502, 669, 855
TfiI GAWTC 3 cut(s) 63, 368, 775
Tru1I TTAA 4 cut(s) 185, 333, 342, 624
Tru9I TTAA 4 cut(s) 185, 333, 342, 624
TscAI CASTG 3 cut(s) 268, 312, 438
TseFI GTSAC 2 cut(s) 259, 383
TseI GCWGC 5 cut(s) 23, 474, 784, 970, 973
Tsp45I GTSAC 2 cut(s) 259, 383
TspDTI ATGAA 1 cut(s) 702
TspRI CASTG 3 cut(s) 268, 312, 438
XceI RCATGY 1 cut(s) 811
XmiI GTMKAC 2 cut(s) 489, 927
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.