Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011736

Physical Location & Seq

Genomic Coordinates Reverse (-)

15365936 .. 15368044

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1182800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCTGCCTGCAAACAAGTAGTACAGCCGATGGTGAGCTTCCAAGGCCCCGGGCTCACCAACATAAACATGGATCCGTTTTTACGGCGAAAAGATAAGGTTGTGATCGTAATGGGAGCCACCGGGACTGGCAAGTCCCGGCTTGCCATAGACCTCGCAAGACATAATCCGCCGGCGGAGATTATTAACTCGGACAAAATGCAAGTCTACAAAGGCTTGGACATCGTCACCAACAAAGTCACTGAGGACGAGTGTAAAGGCATACCTCACCATTTGATAGGCAAAGTCGATCCCGACTCAGATTTTACTGCCAATGATTTCAAGCACCATGCGTCGTTGGCCATCGAATCGATCTTGGAGCGTGACAGATTGCCAATCATTGCCGGGGGTTCAAATTCGTATATTGAAGCCTTGGTGGATGAACACTCGGAGTTTCGAATGAAGTACGAGTGTTGCTTTCTTTGGGTTGATGTGGCCATCCCCGTGCTCCACTCTTTCGTGTCAGAGAGAGTGGACCGGATGGTGAAGATGGGTTTGGTGGAAGAGGTGAGGAGAATGTTTGACTCTACAACTGAGAAAGAATATACGCGCGGAGTCAGGCGAGCCATAGGCGTGCCTGAAATGGATGAGTATTTACAAGGCGAAGCAAGTGATAATAACGATGATGAAACTCAAGAGAGGCTTCTTCAAGCAGCAATTTCTAAAATCAAAGAAAATACTTGCATTTTGGCGTATCGCCAATTGCAAAAGATTCGCCGGCTGCAAGCTCGGCGGGGTTGGAACATGCACCGCCTTGATGCCACGGAGGCGTTCTTAAAGCACCACGCGGAAACGAATCAAGCGTGGGAAAAACTCGTGGCAAGACCTGCCACGCGGATAGTGCGTCAGTTCCTTTTGGACCCAATTCCCTCCATTCTTCCGACAGAGAATATCACCGCCACTACCACCGCTCCGGTTCTTTCCACGTCTATGCCGACAGTGACCGCTGCAACACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009824 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

333

Amino Acids

37.48

Weight (kDa)

6.57

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	33 - 177	2.5e-08	Isopentenyl transferase
IPPT	PF01715	68 - 145	5.4e-24	IPP transferase
IPPT	PF01715	146 - 252	1.1e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23630 AT5G19040 AT5G19040 AT5G19040
fragaria_vesca	FvH4_4g14440
malus_domestica	MD13G1182800.v1.1 MD16G1183400.v1.1
prunus_persica	Prupe.1G150800_v2.0.a1
pyrus_communis	pycom13g15770 pycom16g15410
rosa_chinensis	RchiOBHm_Chr4g0418401
rosa_laevigata	RLG00000007870
rosa_multiflora	Rmu_sc0001266.1_g000013
rosa_roxburghii	Rroxscaffold_5G00361580
rosa_rugosa	Rorug04G0152700
rosa_samantha	Rh4BG216100 Rh4CG226100 Rh4DG212800
rosa_wichuraiana	Rw4G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	874
AccBSI	CCGCTC	1 cut(s)	950
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	4 cut(s)	589, 591, 827, 874
AclWI	GGATC	3 cut(s)	68, 81, 284
AcoI	YGGCCR	2 cut(s)	339, 474
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	2 cut(s)	24, 446
AgsI	TTSAA	4 cut(s)	322, 393, 407, 689
AjiI	CACGTC	1 cut(s)	966
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	2 cut(s)	39, 767
AluI	AGCT	2 cut(s)	39, 767
Alw21I	GWGCWC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	68, 81, 284
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	46, 339, 474
ApeKI	GCWGC	3 cut(s)	692, 760, 986
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	3 cut(s)	47, 514, 898
AsuC2I	CCSGG	5 cut(s)	51, 52, 124, 139, 385
AsuHPI	GGTGA	7 cut(s)	46, 49, 220, 260, 535, 559, 925
AsuII	TTCGAA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	514, 898
BalI	TGGCCA	2 cut(s)	341, 476
BamHI	GGATCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	704, 747, 973
BccI	CCATC	5 cut(s)	25, 350, 485, 514, 523
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BcnI	CCSGG	5 cut(s)	51, 52, 124, 139, 385
BfuAI	ACCTGC	1 cut(s)	874
BglI	GCCNNNNNGGC	1 cut(s)	806
BisI	GCNGC	3 cut(s)	693, 761, 987
BlsI	GCNGC	3 cut(s)	694, 762, 988
Bme1390I	CCNGG	5 cut(s)	51, 52, 124, 139, 385
Bme18I	GGWCC	2 cut(s)	514, 898
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	966
BmgT120I	GGNCC	3 cut(s)	47, 514, 898
BmiI	GGNNCC	4 cut(s)	49, 75, 118, 900
BmrFI	CCNGG	5 cut(s)	51, 52, 124, 139, 385
BmsI	GCATC	1 cut(s)	787
Bpu14I	TTCGAA	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	657
BpuMI	CCSGG	5 cut(s)	51, 52, 124, 139, 385
Bsa29I	ATCGAT	1 cut(s)	350
BsaJI	CCNNGG	6 cut(s)	43, 49, 50, 384, 411, 801
BsaWI	WCCGGW	2 cut(s)	516, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	934, 964
Bse118I	RCCGGY	2 cut(s)	172, 756
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	378
BseCI	ATCGAT	1 cut(s)	350
BseDI	CCNNGG	6 cut(s)	43, 49, 50, 384, 411, 801
BseGI	GGATG	4 cut(s)	424, 477, 525, 631
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	234, 312, 564
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	3 cut(s)	704, 747, 973
Bsh1236I	CGCG	4 cut(s)	589, 591, 827, 874
BshFI	GGCC	3 cut(s)	48, 341, 476
BshVI	ATCGAT	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	8 cut(s)	51, 123, 139, 173, 384, 517, 757, 953
BslFI	GGGAC	2 cut(s)	121, 139
BsmFI	GGGAC	2 cut(s)	121, 139
BsnI	GGCC	3 cut(s)	48, 341, 476
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	57, 489
Bsp143I	GATC	4 cut(s)	73, 105, 289, 351
BspANI	GGCC	3 cut(s)	48, 341, 476
BspCNI	CTCAG	3 cut(s)	235, 311, 565
BspDI	ATCGAT	1 cut(s)	350
BspFNI	CGCG	4 cut(s)	589, 591, 827, 874
BspLI	GGNNCC	4 cut(s)	49, 75, 118, 900
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	3 cut(s)	68, 81, 284
BspT104I	TTCGAA	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	950
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	2 cut(s)	172, 756
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	2 cut(s)	172, 756
BssECI	CCNNGG	6 cut(s)	43, 49, 50, 384, 411, 801
BssMI	GATC	4 cut(s)	73, 105, 289, 351
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	2 cut(s)	43, 411
Bst2BI	CACGAG	1 cut(s)	854
Bst4CI	ACNGT	1 cut(s)	979
Bst6I	CTCTTC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	7 cut(s)	10, 144, 174, 603, 614, 758, 765
BstDEI	CTNAG	3 cut(s)	243, 298, 573
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	4 cut(s)	424, 477, 525, 631
BstFNI	CGCG	4 cut(s)	589, 591, 827, 874
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	4 cut(s)	76, 108, 292, 354
BstMBI	GATC	4 cut(s)	73, 105, 289, 351
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 338, 769, 806, 866, 880
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	5 cut(s)	49, 50, 122, 137, 383
BstUI	CGCG	4 cut(s)	589, 591, 827, 874
BstV1I	GCAGC	3 cut(s)	704, 747, 973
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	48, 341, 476
BsuTUI	ATCGAT	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	801
BtrI	CACGTC	1 cut(s)	966
BtsCI	GGATG	4 cut(s)	424, 477, 525, 631
BtsIMutI	CAGTG	2 cut(s)	240, 984
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	7 cut(s)	10, 144, 174, 603, 614, 758, 765
CfoI	GCGC	1 cut(s)	591
Cfr10I	RCCGGY	2 cut(s)	172, 756
Cfr13I	GGNCC	3 cut(s)	47, 514, 898
Cfr9I	CCCGGG	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	350
CseI	GACGC	2 cut(s)	321, 872
Csp6I	GTAC	2 cut(s)	23, 445
CviAII	CATG	3 cut(s)	70, 329, 784
CviQI	GTAC	2 cut(s)	23, 445
DdeI	CTNAG	3 cut(s)	243, 298, 573
DpnI	GATC	4 cut(s)	75, 107, 291, 353
DpnII	GATC	4 cut(s)	73, 105, 289, 351
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	339, 474
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EciI	GGCGGA	2 cut(s)	159, 191
Eco130I	CCWWGG	2 cut(s)	43, 411
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	514, 898
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	43, 411
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	43, 411
FaeI	CATG	3 cut(s)	73, 332, 787
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	2 cut(s)	121, 139
FatI	CATG	3 cut(s)	69, 328, 783
FauI	CCCGC	1 cut(s)	765
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	693, 761, 987
FokI	GGATG	4 cut(s)	431, 464, 532, 638
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	693, 761, 987
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	3 cut(s)	693, 761, 987
HaeIII	GGCC	3 cut(s)	48, 341, 476
HapII	CCGG	8 cut(s)	51, 123, 139, 173, 384, 517, 757, 953
HgaI	GACGC	2 cut(s)	321, 872
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	3 cut(s)	73, 332, 787
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HinfI	GANTC	6 cut(s)	296, 347, 563, 594, 751, 835
HpaII	CCGG	8 cut(s)	51, 123, 139, 173, 384, 517, 757, 953
HphI	GGTGA	7 cut(s)	46, 49, 220, 260, 535, 559, 925
Hpy166II	GTNNAC	2 cut(s)	208, 514
Hpy188I	TCNGA	5 cut(s)	193, 301, 430, 505, 921
Hpy188III	TCNNGA	2 cut(s)	293, 674
Hpy8I	GTNNAC	2 cut(s)	208, 514
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	979
HpyCH4IV	ACGT	1 cut(s)	965
HpyCH4V	TGCA	7 cut(s)	12, 202, 723, 745, 763, 787, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 338, 769, 806, 866, 880
HpyF3I	CTNAG	3 cut(s)	243, 298, 573
HpySE526I	ACGT	1 cut(s)	965
Hsp92II	CATG	3 cut(s)	73, 332, 787
HspAI	GCGC	1 cut(s)	589
KroI	GCCGGC	2 cut(s)	172, 756
KroNI	GCCGGC	2 cut(s)	174, 758
Kzo9I	GATC	4 cut(s)	73, 105, 289, 351
LmnI	GCTCC	4 cut(s)	116, 358, 492, 955
Lsp1109I	GCAGC	3 cut(s)	704, 747, 973
LweI	GCATC	1 cut(s)	787
MaeII	ACGT	1 cut(s)	965
MaeIII	GTNAC	4 cut(s)	226, 238, 362, 979
MalI	GATC	4 cut(s)	75, 107, 291, 353
MbiI	CCGCTC	1 cut(s)	950
MboI	GATC	4 cut(s)	73, 105, 289, 351
MboII	GAAGA	4 cut(s)	538, 554, 677, 908
MfeI	CAATTG	1 cut(s)	740
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	57, 489
MlsI	TGGCCA	2 cut(s)	341, 476
MluCI	AATT	4 cut(s)	394, 696, 740, 903
MluNI	TGGCCA	2 cut(s)	341, 476
MlyI	GAGTC	3 cut(s)	290, 557, 603
MmeI	TCCRAC	2 cut(s)	758, 944
MnlI	CCTC	8 cut(s)	164, 238, 276, 538, 543, 672, 799, 919
Mox20I	TGGCCA	2 cut(s)	341, 476
MreI	CGCCGGCG	1 cut(s)	172
MroNI	GCCGGC	2 cut(s)	172, 756
MscI	TGGCCA	2 cut(s)	341, 476
MseI	TTAA	2 cut(s)	186, 815
MslI	CAYNNNNRTG	4 cut(s)	68, 482, 611, 968
Msp20I	TGGCCA	2 cut(s)	341, 476
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	8 cut(s)	51, 123, 139, 173, 384, 517, 757, 953
MspR9I	CCNGG	5 cut(s)	51, 52, 124, 139, 385
MunI	CAATTG	1 cut(s)	740
MvnI	CGCG	4 cut(s)	589, 591, 827, 874
MwoI	GCNNNNNNNGC	6 cut(s)	45, 338, 769, 806, 866, 880
NaeI	GCCGGC	2 cut(s)	174, 758
NciI	CCSGG	5 cut(s)	51, 52, 124, 139, 385
NdeII	GATC	4 cut(s)	73, 105, 289, 351
NgoMIV	GCCGGC	2 cut(s)	172, 756
NlaIII	CATG	3 cut(s)	73, 332, 787
NlaIV	GGNNCC	4 cut(s)	49, 75, 118, 900
NmeAIII	GCCGAG	1 cut(s)	748
NmuCI	GTSAC	4 cut(s)	226, 238, 362, 979
NspI	RCATGY	1 cut(s)	787
NspV	TTCGAA	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	2 cut(s)	839, 971
PdiI	GCCGGC	2 cut(s)	174, 758
PfeI	GAWTC	3 cut(s)	347, 751, 835
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	694, 762, 988
PleI	GAGTC	3 cut(s)	290, 557, 602
PpsI	GAGTC	3 cut(s)	290, 557, 602
PspN4I	GGNNCC	4 cut(s)	49, 75, 118, 900
PspPI	GGNCC	3 cut(s)	47, 514, 898
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	24, 446
RsaNI	GTAC	2 cut(s)	23, 445
RseI	CAYNNNNRTG	4 cut(s)	68, 482, 611, 968
SaqAI	TTAA	2 cut(s)	186, 815
SatI	GCNGC	3 cut(s)	693, 761, 987
Sau3AI	GATC	4 cut(s)	73, 105, 289, 351
Sau96I	GGNCC	3 cut(s)	47, 514, 898
SchI	GAGTC	3 cut(s)	290, 557, 603
ScrFI	CCNGG	5 cut(s)	51, 52, 124, 139, 385
SduI	GDGCHC	2 cut(s)	57, 489
SetI	ASST	8 cut(s)	41, 102, 156, 268, 549, 769, 868, 968
SfaNI	GCATC	1 cut(s)	787
SfuI	TTCGAA	1 cut(s)	436
SgrAI	CRCCGGYG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	514, 898
SmaI	CCCGGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	4 cut(s)	68, 482, 611, 968
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	4 cut(s)	394, 696, 740, 903
StyD4I	CCNGG	5 cut(s)	49, 50, 122, 137, 383
StyI	CCWWGG	2 cut(s)	43, 411
TaaI	ACNGT	1 cut(s)	979
TaiI	ACGT	1 cut(s)	968
TaqI	TCGA	4 cut(s)	288, 345, 350, 436
TasI	AATT	4 cut(s)	394, 696, 740, 903
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	347, 751, 835
Tru1I	TTAA	2 cut(s)	186, 815
Tru9I	TTAA	2 cut(s)	186, 815
TscAI	CASTG	2 cut(s)	247, 984
TseFI	GTSAC	4 cut(s)	226, 238, 362, 979
TseI	GCWGC	3 cut(s)	692, 760, 986
Tsp45I	GTSAC	4 cut(s)	226, 238, 362, 979
TspDTI	ATGAA	3 cut(s)	435, 455, 681
TspGWI	ACGGA	2 cut(s)	66, 818
TspMI	CCCGGG	1 cut(s)	50
TspRI	CASTG	2 cut(s)	247, 984
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	514, 898
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.