AT3G23830

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009810
Physical Location & Seq
Reverse (-)
8606429 .. 8608297
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23830.2

Sequence Viewer

Length: 411 bp
ATGGCTTTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCAGTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTCTCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACAGAAGCAACGGTGATTGCAGACAGAGAGACAGGGAGGTCGAGGGGATTCGGATTTGTTAGCTTCAGCTGTGAGGATTCTGCTAACAATGCCATAAAAGAAATGGATGGAAAGGAGCTGAATGGTAGGCAAATCCGTGTGAATCTTGCAACCGAAAGATCGAGTGCCCCGAGATCATCATTTGGTGGTGGTGGCGGTTACGGTGGTGGCGGTGGTGGTGGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

136

Amino Acids

14.13

Weight (kDa)

8.68

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 107 8.8e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 220
AciI CCGC 3 cut(s) 24, 378, 393
AcuI CTGAAG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 96
AluBI AGCT 8 cut(s) 54, 109, 147, 161, 171, 246, 252, 301
AluI AGCT 8 cut(s) 54, 109, 147, 161, 171, 246, 252, 301
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 3 cut(s) 28, 128, 206
Ama87I CYCGRG 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 188, 208
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 28, 128, 206
BfaI CTAG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 352
BsmAI GTCTC 3 cut(s) 28, 128, 206
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 56, 352
Bsp143I GATC 2 cut(s) 341, 356
BspACI CCGC 3 cut(s) 24, 378, 393
BspCNI CTCAG 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 65
BssMI GATC 2 cut(s) 341, 356
Bst4CI ACNGT 2 cut(s) 196, 386
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 20, 48, 105
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 344, 359
BstMAI GTCTC 3 cut(s) 28, 128, 206
BstMBI GATC 2 cut(s) 341, 356
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 352
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 1 cut(s) 97
DdeI CTNAG 3 cut(s) 20, 48, 105
DpnI GATC 2 cut(s) 343, 358
DpnII GATC 2 cut(s) 341, 356
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 77, 98, 278
FatI CATG 1 cut(s) 96
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 1 cut(s) 168
Hin1II CATG 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 107, 159
HinfI GANTC 3 cut(s) 231, 260, 325
HphI GGTGA 2 cut(s) 188, 208
Hpy188I TCNGA 2 cut(s) 51, 236
Hpy188III TCNNGA 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 196, 386
HpyCH4V TGCA 3 cut(s) 12, 203, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 3 cut(s) 20, 48, 105
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 2 cut(s) 341, 356
LmnI GCTCC 2 cut(s) 152, 298
LpnPI CCDG 2 cut(s) 78, 201
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 67, 92, 181, 380
MalI GATC 2 cut(s) 343, 358
MboI GATC 2 cut(s) 341, 356
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 56, 352
MnlI CCTC 4 cut(s) 112, 213, 219, 250
MseI TTAA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 341, 356
NlaIII CATG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfeI GAWTC 3 cut(s) 231, 260, 325
PscI ACATGT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 252
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 2 cut(s) 341, 356
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 56, 352
SetI ASST 9 cut(s) 56, 111, 149, 163, 173, 224, 248, 254, 303
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SsiI CCGC 3 cut(s) 24, 378, 393
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 56
TaaI ACNGT 2 cut(s) 196, 386
TaqI TCGA 2 cut(s) 224, 344
TfiI GAWTC 3 cut(s) 231, 260, 325
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 62
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.