Rmu_sc0008583.1_g000007

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008583.1
OG0009810
Physical Location & Seq
Reverse (-)
37404 .. 42883
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008583.1_g000007.1.cds

Sequence Viewer

Length: 858 bp
atgacgccatctaactccacgatcccaacccctctgggcttcgccggttttgttcgtcagatgtccgagaaactctccacgcccgaatcgggtctgggcttcgccagttttgtttgtcatatgtccgggaagctccgaagctccaagccggaatcgagtctgggcttcacttgcaggtcttggacgacgtcaaaactgtgcccgggaccggagatacaatcaagttgcgattttcgtgatgatcagtcgccggcaagagagacagaagcaaatcgaaaacgtacccgattctactggcggttccttcagaaggtccaacccggcctcgccgagcttctcagcgacgaggaccgtcagtttggcgttgagcctggccgcggagagcacgatgacgagtttcggtgcggcgatggtgagagccagagctcttcaaagatccaagaacaatccactttccagatggctttctataacaaggttgggagccttttgagacaaggcatttcccagaatggacaagcaccaatgtcatctatgtttaattctgctcgttacatgtcctccaagctttttgttggaggtctttcgttttccactgatgactcttctctcaaagatgctttttccggctttggtgatgtgactgatgcaaaggtcatcatggatagagatactgggaggtcgaggggatttggatttgttaactttgccagcgaagatgctgccaattcagccctcaccgctatggatggccaggagttaaatgggcgaagcattcgtgtgagtgttgctaccgaacgaactggtcctcgaccatcatttaatggtgggtaccgtgggggtgacagtggcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

285

Amino Acids

31.11

Weight (kDa)

6.21

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 831
AccB1I GGYRCC 1 cut(s) 831
AccII CGCG 1 cut(s) 378
AciI CCGC 5 cut(s) 298, 376, 378, 405, 741
AclWI GGATC 2 cut(s) 16, 430
AcoI YGGCCR 2 cut(s) 373, 751
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 2 cut(s) 5, 188
AfaI GTAC 2 cut(s) 283, 833
AfiI CCNNNNNNNGG 4 cut(s) 89, 208, 310, 377
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 1 cut(s) 432
AjnI CCWGG 2 cut(s) 370, 753
AluBI AGCT 5 cut(s) 133, 141, 334, 426, 568
AluI AGCT 5 cut(s) 133, 141, 334, 426, 568
Alw21I GWGCWC 2 cut(s) 387, 428
Alw26I GTCTC 2 cut(s) 254, 487
AlwI GGATC 2 cut(s) 16, 430
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 3 cut(s) 322, 373, 751
ApeKI GCWGC 1 cut(s) 722
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp718I GGTACC 1 cut(s) 831
AspS9I GGNCC 4 cut(s) 206, 313, 349, 806
AsuC2I CCSGG 4 cut(s) 127, 203, 204, 321
AsuHPI GGTGA 4 cut(s) 425, 647, 730, 854
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 4 cut(s) 206, 313, 349, 806
BaeGI GKGCMC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 1 cut(s) 831
BanII GRGCYC 1 cut(s) 428
Bbv12I GWGCWC 2 cut(s) 387, 428
BbvI GCAGC 1 cut(s) 709
BccI CCATC 5 cut(s) 16, 404, 454, 743, 823
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 2 cut(s) 372, 755
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 4 cut(s) 127, 203, 204, 321
BcoDI GTCTC 2 cut(s) 254, 487
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 3 cut(s) 376, 406, 723
BlsI GCNGC 3 cut(s) 377, 407, 724
Bme1390I CCNGG 6 cut(s) 127, 203, 204, 321, 372, 755
Bme18I GGWCC 4 cut(s) 206, 313, 349, 806
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 4 cut(s) 206, 313, 349, 806
BmiI GGNNCC 4 cut(s) 207, 302, 485, 833
BmrFI CCNGG 6 cut(s) 127, 203, 204, 321, 372, 755
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 3 cut(s) 607, 637, 709
BmuI ACTGGG 1 cut(s) 684
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpuMI CCSGG 4 cut(s) 127, 203, 204, 321
BsaHI GRCGYC 2 cut(s) 5, 188
BsaJI CCNNGG 3 cut(s) 202, 376, 835
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 208, 310, 377
Bse118I RCCGGY 2 cut(s) 44, 250
Bse1I ACTGG 4 cut(s) 105, 299, 679, 808
BseBI CCWGG 2 cut(s) 372, 755
BseDI CCNNGG 3 cut(s) 202, 376, 835
BseGI GGATG 1 cut(s) 754
BseLI CCNNNNNNNGG 4 cut(s) 89, 208, 310, 377
BseMII CTCAG 1 cut(s) 352
BseNI ACTGG 4 cut(s) 105, 299, 679, 808
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 3 cut(s) 324, 375, 753
BshNI GGYRCC 1 cut(s) 831
BsiHKAI GWGCWC 2 cut(s) 387, 428
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 8 cut(s) 45, 126, 149, 203, 209, 251, 321, 627
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 4 cut(s) 89, 208, 310, 377
BsmAI GTCTC 2 cut(s) 254, 487
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 3 cut(s) 324, 375, 753
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 3 cut(s) 203, 387, 428
Bsp143I GATC 3 cut(s) 21, 241, 435
BspACI CCGC 5 cut(s) 298, 376, 378, 405, 741
BspANI GGCC 3 cut(s) 324, 375, 753
BspCNI CTCAG 1 cut(s) 351
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 4 cut(s) 207, 302, 485, 833
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 16, 430
BspQI GCTCTTC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 831
BsrFI RCCGGY 2 cut(s) 44, 250
BsrI ACTGG 4 cut(s) 105, 299, 679, 808
BssAI RCCGGY 2 cut(s) 44, 250
BssECI CCNNGG 3 cut(s) 202, 376, 835
BssMI GATC 3 cut(s) 21, 241, 435
BssNI GRCGYC 2 cut(s) 5, 188
Bst2UI CCWGG 2 cut(s) 372, 755
Bst4CI ACNGT 4 cut(s) 198, 353, 836, 848
Bst6I CTCTTC 2 cut(s) 433, 610
BstACI GRCGYC 2 cut(s) 5, 188
BstC8I GCNNGC 2 cut(s) 252, 712
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 2 cut(s) 376, 835
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 754
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 3 cut(s) 24, 244, 438
BstMAI GTCTC 2 cut(s) 254, 487
BstMBI GATC 3 cut(s) 21, 241, 435
BstMWI GCNNNNNNNGC 3 cut(s) 171, 731, 740
BstNI CCWGG 2 cut(s) 372, 755
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 6 cut(s) 125, 201, 202, 319, 370, 753
BstSLI GKGCMC 1 cut(s) 203
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 709
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 3 cut(s) 324, 375, 753
BtgI CCRYGG 2 cut(s) 376, 835
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 754
BtsIMutI CAGTG 2 cut(s) 594, 853
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 252, 712
Cfr10I RCCGGY 2 cut(s) 44, 250
Cfr13I GGNCC 4 cut(s) 206, 313, 349, 806
Cfr42I CCGCGG 1 cut(s) 379
Cfr9I CCCGGG 1 cut(s) 202
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 282, 832
CviAII CATG 2 cut(s) 556, 661
CviQI GTAC 2 cut(s) 282, 832
DdeI CTNAG 1 cut(s) 338
DpnI GATC 3 cut(s) 23, 243, 437
DpnII GATC 3 cut(s) 21, 241, 435
EaeI YGGCCR 2 cut(s) 373, 751
Eam1104I CTCTTC 2 cut(s) 433, 610
EarI CTCTTC 2 cut(s) 433, 610
Ecl136II GAGCTC 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 4 cut(s) 206, 313, 349, 806
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 370, 753
EcoT38I GRGCYC 1 cut(s) 428
FaeI CATG 2 cut(s) 559, 664
FaiI YATR 7 cut(s) 120, 122, 471, 536, 557, 662, 746
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 555, 660
FauNDI CATATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 376, 406, 723
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 3 cut(s) 376, 406, 723
GluI GCNGC 3 cut(s) 376, 406, 723
HaeIII GGCC 3 cut(s) 324, 375, 753
HapII CCGG 8 cut(s) 45, 126, 149, 203, 209, 251, 321, 627
HgaI GACGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 5, 188
Hin1II CATG 2 cut(s) 559, 664
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 5 cut(s) 86, 152, 157, 288, 602
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 8 cut(s) 45, 126, 149, 203, 209, 251, 321, 627
HphI GGTGA 4 cut(s) 425, 647, 730, 854
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 4 cut(s) 60, 67, 137, 309
Hpy188III TCNNGA 2 cut(s) 236, 457
Hpy8I GTNNAC 1 cut(s) 703
Hpy99I CGWCG 2 cut(s) 190, 347
HpyAV CCTTC 2 cut(s) 304, 314
HpyCH4III ACNGT 4 cut(s) 198, 353, 836, 848
HpyCH4IV ACGT 2 cut(s) 188, 280
HpyCH4V TGCA 2 cut(s) 174, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 731, 740
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 2 cut(s) 188, 280
Hsp92I GRCGYC 2 cut(s) 5, 188
Hsp92II CATG 2 cut(s) 559, 664
KpnI GGTACC 1 cut(s) 835
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 703
KspI CCGCGG 1 cut(s) 379
Kzo9I GATC 3 cut(s) 21, 241, 435
LguI GCTCTTC 1 cut(s) 433
LmnI GCTCC 3 cut(s) 138, 146, 483
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 3 cut(s) 607, 637, 709
MaeII ACGT 2 cut(s) 188, 280
MaeIII GTNAC 3 cut(s) 551, 640, 842
MalI GATC 3 cut(s) 23, 243, 437
MboI GATC 3 cut(s) 21, 241, 435
MboII GAAGA 3 cut(s) 420, 597, 728
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 3 cut(s) 203, 387, 428
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 2 cut(s) 541, 727
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 2 cut(s) 166, 596
MmeI TCCRAC 2 cut(s) 340, 556
MnlI CCTC 9 cut(s) 42, 335, 340, 571, 572, 672, 678, 746, 819
Mox20I TGGCCA 1 cut(s) 753
MroNI GCCGGC 1 cut(s) 250
MscI TGGCCA 1 cut(s) 753
MseI TTAA 5 cut(s) 540, 702, 761, 822, 856
MslI CAYNNNNRTG 2 cut(s) 743, 779
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 8 cut(s) 45, 126, 149, 203, 209, 251, 321, 627
MspR9I CCNGG 6 cut(s) 127, 203, 204, 321, 372, 755
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 372, 755
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 171, 731, 740
NaeI GCCGGC 1 cut(s) 252
NciI CCSGG 4 cut(s) 127, 203, 204, 321
NdeI CATATG 1 cut(s) 120
NdeII GATC 3 cut(s) 21, 241, 435
NgoMIV GCCGGC 1 cut(s) 250
NlaIII CATG 2 cut(s) 559, 664
NlaIV GGNNCC 4 cut(s) 207, 302, 485, 833
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 640, 842
NspI RCATGY 1 cut(s) 559
PciI ACATGT 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 433
PctI GAATGC 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 86, 152, 288
PflFI GACNNNGTC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 3 cut(s) 377, 407, 724
PleI GAGTC 2 cut(s) 165, 596
PpsI GAGTC 2 cut(s) 165, 596
PscI ACATGT 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 370, 753
PspGI CCWGG 2 cut(s) 370, 753
PspN4I GGNNCC 4 cut(s) 207, 302, 485, 833
PspPI GGNCC 4 cut(s) 206, 313, 349, 806
PsuI RGATCY 1 cut(s) 435
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 2 cut(s) 283, 833
RsaNI GTAC 2 cut(s) 282, 832
RseI CAYNNNNRTG 2 cut(s) 743, 779
SacI GAGCTC 1 cut(s) 428
SacII CCGCGG 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 433
SaqAI TTAA 5 cut(s) 540, 702, 761, 822, 856
SatI GCNGC 3 cut(s) 376, 406, 723
Sau3AI GATC 3 cut(s) 21, 241, 435
Sau96I GGNCC 4 cut(s) 206, 313, 349, 806
SchI GAGTC 2 cut(s) 166, 596
ScrFI CCNGG 6 cut(s) 127, 203, 204, 321, 372, 755
SduI GDGCHC 3 cut(s) 203, 387, 428
SfaNI GCATC 3 cut(s) 607, 637, 709
Sfr303I CCGCGG 1 cut(s) 379
SgrBI CCGCGG 1 cut(s) 379
SinI GGWCC 4 cut(s) 206, 313, 349, 806
SmaI CCCGGG 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 743, 779
Sse9I AATT 2 cut(s) 541, 727
SsiI CCGC 5 cut(s) 298, 376, 378, 405, 741
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 6 cut(s) 125, 201, 202, 319, 370, 753
TaaI ACNGT 4 cut(s) 198, 353, 836, 848
TaiI ACGT 2 cut(s) 191, 283
TaqI TCGA 4 cut(s) 155, 274, 683, 811
TasI AATT 2 cut(s) 541, 727
TauI GCSGC 2 cut(s) 378, 408
TfiI GAWTC 3 cut(s) 86, 152, 288
Tru1I TTAA 5 cut(s) 540, 702, 761, 822, 856
Tru9I TTAA 5 cut(s) 540, 702, 761, 822, 856
TscAI CASTG 2 cut(s) 601, 853
TseFI GTSAC 2 cut(s) 640, 842
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 2 cut(s) 640, 842
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 2 cut(s) 601, 853
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 4 cut(s) 206, 313, 349, 806
XagI CCTNNNNNAGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 2 cut(s) 457, 761
XmaI CCCGGG 1 cut(s) 202
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.