Rh4BG180700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009810
Physical Location & Seq
Reverse (-)
31933673 .. 31935066
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG180700.1

Sequence Viewer

Length: 489 bp
ATGCTTAATCTTGTTGCTGCTTTTGTTTATGTTTTGACTGTGTTGTGCTGTGTAGGCTCTTCAAAGATCCAAGAACAATCCACTTTCCAGATGGCTTTCTATAACAAGGTTGGGAGCCTTTTGAGACAAGGCATTTCCCAGAATGGACAAGCACCAATGTCTTCTATGTTTAATTCTGCTCGTTACATGTCCTCCAAGCTTTTTGTTGGAGGTCTTTCGTTTTCCACTGATGACTCTTCTCTCAAAGATGCTTTTTCCGGCTTTGGTGATGTGACTGATGCAAAGGTCATCATGGATAGAGATACTGGGAGGTCGAGGGGATTTGGATTTGTTAACTTTGCCAGCGAAGATGCTGCCAATTCAGCCCTCACCGCTATGGATGGCCAGGAGTTAAATGGGCGAAGCATTCGTGTGAGTGTCGCTACCGAACGAACTGGTCCTCGACCATCATTTAATGGTGGTTACCGTGGGGGTGACAGTGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

162

Amino Acids

17.3

Weight (kDa)

7.75

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 67 - 137 1.1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 382
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 17, 353
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 278, 361, 485
AvaII GGWCC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 4, 340
BccI CCATC 3 cut(s) 85, 374, 454
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 118
BisI GCNGC 2 cut(s) 18, 354
BlsI GCNGC 2 cut(s) 19, 355
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 238, 268, 340
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse1I ACTGG 2 cut(s) 310, 439
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 385
BseNI ACTGG 2 cut(s) 310, 439
BseXI GCAGC 2 cut(s) 4, 340
BshFI GGCC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 1 cut(s) 384
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 64
BsrI ACTGG 2 cut(s) 310, 439
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 40, 467, 479
Bst6I CTCTTC 2 cut(s) 64, 241
BstC8I GCNNGC 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 466
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 54, 362, 371
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 4, 340
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 225, 484
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 437
CviAII CATG 2 cut(s) 187, 292
CviJI RGCY 8 cut(s) 57, 95, 117, 199, 261, 365, 384, 483
CviKI_1 RGCY 8 cut(s) 57, 95, 117, 199, 261, 365, 384, 483
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 64, 241
EarI CTCTTC 2 cut(s) 64, 241
Eco47I GGWCC 1 cut(s) 437
Eco91I GGTNACC 1 cut(s) 461
EcoO65I GGTNACC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 384
FaeI CATG 2 cut(s) 190, 295
FaiI YATR 6 cut(s) 30, 102, 167, 188, 293, 377
FatI CATG 2 cut(s) 186, 291
Fnu4HI GCNGC 2 cut(s) 18, 354
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 18, 354
GluI GCNGC 2 cut(s) 18, 354
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 258
Hin1II CATG 2 cut(s) 190, 295
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 233
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 258
HphI GGTGA 3 cut(s) 278, 361, 485
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 3 cut(s) 40, 467, 479
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 362, 371
Hsp92II CATG 2 cut(s) 190, 295
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 66
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 8 cut(s) 101, 152, 271, 291, 355, 371, 398, 420
Lsp1109I GCAGC 2 cut(s) 4, 340
LweI GCATC 3 cut(s) 238, 268, 340
MaeIII GTNAC 4 cut(s) 182, 271, 461, 473
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 4 cut(s) 51, 153, 228, 359
MflI RGATCY 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 2 cut(s) 172, 358
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 6 cut(s) 202, 203, 303, 309, 377, 450
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
MseI TTAA 6 cut(s) 6, 171, 333, 392, 453, 487
MslI CAYNNNNRTG 2 cut(s) 374, 410
Msp20I TGGCCA 1 cut(s) 384
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 3 cut(s) 54, 362, 371
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 190, 295
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 271, 473
NspI RCATGY 1 cut(s) 190
PciI ACATGT 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 64
PctI GAATGC 1 cut(s) 405
PkrI GCNGC 2 cut(s) 19, 355
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 384
PspEI GGTNACC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 437
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 374, 410
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 6 cut(s) 6, 171, 333, 392, 453, 487
SatI GCNGC 2 cut(s) 18, 354
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 386
SetI ASST 5 cut(s) 111, 201, 214, 288, 314
SfaNI GCATC 3 cut(s) 238, 268, 340
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 374, 410
Sse9I AATT 2 cut(s) 172, 358
SsiI CCGC 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 3 cut(s) 40, 467, 479
TaqI TCGA 2 cut(s) 314, 442
TasI AATT 2 cut(s) 172, 358
Tru1I TTAA 6 cut(s) 6, 171, 333, 392, 453, 487
Tru9I TTAA 6 cut(s) 6, 171, 333, 392, 453, 487
TscAI CASTG 2 cut(s) 232, 484
TseFI GTSAC 2 cut(s) 271, 473
TseI GCWGC 2 cut(s) 17, 353
Tsp45I GTSAC 2 cut(s) 271, 473
TspRI CASTG 2 cut(s) 232, 484
VpaK11BI GGWCC 1 cut(s) 437
XceI RCATGY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.