FvH4_4g13330

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009810
Physical Location & Seq
Reverse (-)
16930656 .. 16932410
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13330.t1

Sequence Viewer

Length: 366 bp
ATGGCATCCATGTTGAACTCTGCTCGTTACATGTCCTCCAAGCTTTTTATTGGAGGTCTTTCGTTTTCCACTGATGACACATCTCTCAAGGAGGCATTTTCCGGCTTTGGTGATGTGACTGATGCAAAAGTTATCATGGATAGGGATACTGGAAGGTCTAGGGGATTTGGATTTGTCAACTTTGTTGACGAAGAAGCGGCCAATTCAGCCCTCACTGCTATGGATGGCCAGGACTTAAATGGGCGAAGCATTCGTGTGAGTGTCGCTACCGAACGAACTGGTCCTCGACCATCCAGCGGTGGTTACCGTGGGGGTGAAGGTGGTGGTTACGGAGGTGGTTACCGTGGTGGTGACAGTAGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

122

Amino Acids

12.65

Weight (kDa)

5.03

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 15 - 85 6.7e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 197, 297
AcoI YGGCCR 2 cut(s) 198, 226
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 2 cut(s) 43, 360
AluI AGCT 2 cut(s) 43, 360
AoxI GGCC 2 cut(s) 198, 226
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 122, 326, 362
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 228
BccI CCATC 2 cut(s) 218, 298
BciT130I CCWGG 1 cut(s) 230
BciVI GTATCC 1 cut(s) 139
BfaI CTAG 1 cut(s) 159
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 14, 112
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 307, 343
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 154, 283
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 307, 343
BseGI GGATG 3 cut(s) 5, 229, 290
BseLI CCNNNNNNNGG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 154, 283
BshFI GGCC 2 cut(s) 200, 228
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 296
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 2 cut(s) 200, 228
BspACI CCGC 2 cut(s) 197, 297
BspANI GGCC 2 cut(s) 200, 228
BsrI ACTGG 2 cut(s) 154, 283
BssECI CCNNGG 2 cut(s) 307, 343
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 3 cut(s) 308, 344, 356
BstDSI CCRYGG 2 cut(s) 307, 343
BstEII GGTNACC 2 cut(s) 302, 338
BstF5I GGATG 3 cut(s) 5, 229, 290
BstMWI GCNNNNNNNGC 2 cut(s) 206, 215
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 34
BstPI GGTNACC 2 cut(s) 302, 338
BstSCI CCNGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 200, 228
BtgI CCRYGG 2 cut(s) 307, 343
BtsCI GGATG 3 cut(s) 5, 229, 290
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 69, 213
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 3 cut(s) 10, 31, 136
CviJI RGCY 6 cut(s) 43, 105, 200, 209, 228, 360
CviKI_1 RGCY 6 cut(s) 43, 105, 200, 209, 228, 360
EaeI YGGCCR 2 cut(s) 198, 226
Eco47I GGWCC 1 cut(s) 281
Eco91I GGTNACC 2 cut(s) 302, 338
EcoO65I GGTNACC 2 cut(s) 302, 338
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 13, 34, 139
FaiI YATR 4 cut(s) 11, 32, 137, 221
FatI CATG 3 cut(s) 9, 30, 135
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 236, 277
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 200, 228
HapII CCGG 1 cut(s) 102
Hin1II CATG 3 cut(s) 13, 34, 139
HincII GTYRAC 2 cut(s) 178, 187
HindII GTYRAC 2 cut(s) 178, 187
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 1 cut(s) 102
HphI GGTGA 3 cut(s) 122, 326, 362
Hpy166II GTNNAC 2 cut(s) 178, 187
Hpy8I GTNNAC 2 cut(s) 178, 187
HpyAV CCTTC 2 cut(s) 147, 311
HpyCH4III ACNGT 3 cut(s) 308, 344, 356
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 215
Hsp92II CATG 3 cut(s) 13, 34, 139
LpnPI CCDG 6 cut(s) 115, 135, 215, 242, 264, 307
LweI GCATC 2 cut(s) 14, 112
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 6 cut(s) 26, 115, 302, 326, 338, 350
MboII GAAGA 1 cut(s) 203
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 1 cut(s) 202
MluNI TGGCCA 1 cut(s) 228
MnlI CCTC 6 cut(s) 46, 47, 85, 221, 294, 326
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 236, 364
MslI CAYNNNNRTG 2 cut(s) 218, 254
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 206, 215
NlaIII CATG 3 cut(s) 13, 34, 139
NmuCI GTSAC 2 cut(s) 115, 350
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PctI GAATGC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 199
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 228
PspEI GGTNACC 2 cut(s) 302, 338
PspGI CCWGG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 218, 254
SaqAI TTAA 2 cut(s) 236, 364
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 230
SetI ASST 6 cut(s) 45, 58, 158, 322, 337, 362
SfaNI GCATC 2 cut(s) 14, 112
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 218, 254
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 197, 297
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 308, 344, 356
TaqI TCGA 1 cut(s) 286
TasI AATT 1 cut(s) 202
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 236, 364
Tru9I TTAA 2 cut(s) 236, 364
TscAI CASTG 2 cut(s) 76, 220
TseFI GTSAC 2 cut(s) 115, 350
Tsp45I GTSAC 2 cut(s) 115, 350
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 76, 220
VpaK11BI GGWCC 1 cut(s) 281
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.