Rh4AG181400

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009810
Physical Location & Seq
Reverse (-)
45268054 .. 45269353
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG181400.1

Sequence Viewer

Length: 399 bp
ATGGCTTTCTATAACAAGGTTGGGAGCCTTTTGAGACAAGGCATTTCCCAGAATGGACAAGCACCAATGTCATCTATGTTTAATTCTGCTCGTTACATGTCCTCCAAGCTTTTTGTTGGAGGTCTTTCGTTTTCCACTGATGACTCTTCTCTCAAAGATGCTTTTTCCGGCTTTGGTGATGTGACTGATGCAAAGGTCATCATGGATAGAGATACTGGGAGGTCGAGGGGATTTGGATTTGTTAACTTTGCCAGCGAAGATGCTGCCAATTCAGCCCTCACCGCTATGGATGGCCAGGAGTTAAATGGGCGAAGCATTCGTGTGAGTGTCGCTACCGAACGAACTGGTCCTCGACCATCATTTAATGGTGGTTACCGTGGGGGTGACGGTGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

132

Amino Acids

13.99

Weight (kDa)

8.06

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 107 6.4e-24 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 292
AflIII ACRYGT 1 cut(s) 96
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 28
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 188, 271, 395
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 294
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 284, 364
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 28
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 3 cut(s) 148, 178, 250
BmuI ACTGGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bse1I ACTGG 2 cut(s) 220, 349
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 295
BseNI ACTGG 2 cut(s) 220, 349
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 1 cut(s) 294
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 26
BsrI ACTGG 2 cut(s) 220, 349
BssECI CCNNGG 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 377, 389
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 376
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 272, 281
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 2 cut(s) 97, 202
CviJI RGCY 7 cut(s) 5, 27, 109, 171, 275, 294, 393
CviKI_1 RGCY 7 cut(s) 5, 27, 109, 171, 275, 294, 393
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 100, 205
FaiI YATR 5 cut(s) 12, 77, 98, 203, 287
FatI CATG 2 cut(s) 96, 201
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 168
Hin1II CATG 2 cut(s) 100, 205
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 143
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 188, 271, 395
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 377, 389
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 281
Hsp92II CATG 2 cut(s) 100, 205
KspAI GTTAAC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 62, 181, 201, 265, 281, 308, 330
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 3 cut(s) 148, 178, 250
MaeIII GTNAC 4 cut(s) 92, 181, 371, 383
MboII GAAGA 2 cut(s) 138, 269
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 82, 268
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 6 cut(s) 112, 113, 213, 219, 287, 360
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 5 cut(s) 81, 243, 302, 363, 397
MslI CAYNNNNRTG 2 cut(s) 284, 320
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 272, 281
NlaIII CATG 2 cut(s) 100, 205
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 181, 383
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PctI GAATGC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PscI ACATGT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 284, 320
SaqAI TTAA 5 cut(s) 81, 243, 302, 363, 397
SatI GCNGC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 296
SetI ASST 5 cut(s) 21, 111, 124, 198, 224
SfaNI GCATC 3 cut(s) 148, 178, 250
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 284, 320
Sse9I AATT 2 cut(s) 82, 268
SsiI CCGC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 377, 389
TaqI TCGA 2 cut(s) 224, 352
TasI AATT 2 cut(s) 82, 268
Tru1I TTAA 5 cut(s) 81, 243, 302, 363, 397
Tru9I TTAA 5 cut(s) 81, 243, 302, 363, 397
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 181, 383
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 2 cut(s) 181, 383
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 347
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.