Prupe.1G164600_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009810
Physical Location & Seq
Forward (+)
13248972 .. 13252086
3115 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G164600.1

Sequence Viewer

Length: 408 bp
ATGGCTTTCTGTAACAAAGTCGGGAGCCTCTTGAGGCATAGCATTTCCCAGAATGGACAAGCACCCATGGCATCTATGCTTAATGCTGCCCGCTGCATGTCCTCCAAGCTTTTTATTGGAGGTCTTTCATTTGGAACTAGTGACGAGTCTCTTAAAGAAGCATTCTCTAGCTTTGGTGATGTGACTGAGGCAAGGGTTATTATGGATAGGAATACTGGGAAGTCTAGGGGGTTTGGATTTGTTGACTTTGCCAGTGATGAATCTGCTAGTTCAGCACTTAATGCCATGGATGGCCAGGAGTTGCATGGGCGAAACATTCGCGTCAGCACTGCCACTGAGAGAACTGGTCCTCGACCATATAATGGTGGTGGTGGTGGCGGCGGTTACCGCGGGGATGGTGGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

136

Amino Acids

14.13

Weight (kDa)

7.81

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccII CGCG 2 cut(s) 321, 390
AciI CCGC 5 cut(s) 91, 378, 381, 388, 390
AcoI YGGCCR 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 362
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 109, 171
AluI AGCT 2 cut(s) 109, 171
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 86, 93
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 294
BbvI GCAGC 2 cut(s) 73, 80
BccI CCATC 2 cut(s) 284, 389
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 153
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 4 cut(s) 138, 168, 225, 267
BisI GCNGC 3 cut(s) 87, 94, 379
BlsI GCNGC 3 cut(s) 88, 95, 380
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 66, 285, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 3 cut(s) 220, 252, 349
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 66, 285, 388
BseGI GGATG 2 cut(s) 295, 400
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 2 cut(s) 177, 327
BseNI ACTGG 3 cut(s) 220, 252, 349
BseXI GCAGC 2 cut(s) 73, 80
Bsh1236I CGCG 2 cut(s) 321, 390
BshFI GGCC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 294
Bsp19I CCATGG 2 cut(s) 66, 285
BspACI CCGC 5 cut(s) 91, 378, 381, 388, 390
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 178, 328
BspFNI CGCG 2 cut(s) 321, 390
BspLI GGNNCC 1 cut(s) 26
BsrI ACTGG 3 cut(s) 220, 252, 349
BssECI CCNNGG 3 cut(s) 66, 285, 388
BssT1I CCWWGG 2 cut(s) 66, 285
Bst2UI CCWGG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 186, 336
BstDSI CCRYGG 3 cut(s) 66, 285, 388
BstEII GGTNACC 1 cut(s) 383
BstF5I GGATG 2 cut(s) 295, 400
BstFNI CGCG 2 cut(s) 321, 390
BstMAI GTCTC 1 cut(s) 153
BstMWI GCNNNNNNNGC 4 cut(s) 68, 272, 281, 387
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 294
BstUI CGCG 2 cut(s) 321, 390
BstV1I GCAGC 2 cut(s) 73, 80
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 3 cut(s) 66, 285, 388
BtsCI GGATG 2 cut(s) 295, 400
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 259, 327, 333
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 347
Cfr42I CCGCGG 1 cut(s) 391
CseI GACGC 1 cut(s) 310
CviAII CATG 4 cut(s) 67, 97, 286, 305
CviJI RGCY 6 cut(s) 5, 27, 109, 171, 294, 402
CviKI_1 RGCY 6 cut(s) 5, 27, 109, 171, 294, 402
DdeI CTNAG 2 cut(s) 186, 336
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 66, 285
Eco47I GGWCC 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 66, 285
ErhI CCWWGG 2 cut(s) 66, 285
FaeI CATG 4 cut(s) 70, 100, 289, 308
FaiI YATR 9 cut(s) 39, 68, 77, 98, 203, 287, 306, 358, 360
FatI CATG 4 cut(s) 66, 96, 285, 304
FauI CCCGC 2 cut(s) 98, 383
Fnu4HI GCNGC 3 cut(s) 87, 94, 379
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 3 cut(s) 87, 94, 379
FspBI CTAG 4 cut(s) 138, 168, 225, 267
GluI GCNGC 3 cut(s) 87, 94, 379
HaeIII GGCC 1 cut(s) 294
HgaI GACGC 1 cut(s) 310
Hin1II CATG 4 cut(s) 70, 100, 289, 308
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 146, 260
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 22, 31
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 96, 304
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 272, 281, 387
HpyF3I CTNAG 2 cut(s) 186, 336
Hsp92II CATG 4 cut(s) 70, 100, 289, 308
KspI CCGCGG 1 cut(s) 391
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 6 cut(s) 62, 201, 265, 281, 308, 330
Lsp1109I GCAGC 2 cut(s) 73, 80
LweI GCATC 1 cut(s) 80
MaeI CTAG 4 cut(s) 138, 168, 225, 267
MaeIII GTNAC 4 cut(s) 11, 140, 181, 383
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 6 cut(s) 27, 38, 112, 113, 181, 360
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 4 cut(s) 81, 153, 279, 406
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 2 cut(s) 93, 390
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 2 cut(s) 321, 390
MwoI GCNNNNNNNGC 4 cut(s) 68, 272, 281, 387
NcoI CCATGG 2 cut(s) 66, 285
NlaIII CATG 4 cut(s) 70, 100, 289, 308
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 140, 181
NspI RCATGY 1 cut(s) 100
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 3 cut(s) 88, 95, 380
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 1 cut(s) 347
SacII CCGCGG 1 cut(s) 391
SaqAI TTAA 4 cut(s) 81, 153, 279, 406
SatI GCNGC 3 cut(s) 87, 94, 379
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 296
SetI ASST 3 cut(s) 111, 124, 173
SfaNI GCATC 1 cut(s) 80
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SpeI ACTAGT 1 cut(s) 137
SsiI CCGC 5 cut(s) 91, 378, 381, 388, 390
SspMI CTAG 4 cut(s) 138, 168, 225, 267
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 66, 285
TaqI TCGA 1 cut(s) 352
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 4 cut(s) 81, 153, 279, 406
Tru9I TTAA 4 cut(s) 81, 153, 279, 406
TscAI CASTG 3 cut(s) 259, 334, 340
TseFI GTSAC 2 cut(s) 140, 181
TseI GCWGC 2 cut(s) 86, 93
Tsp45I GTSAC 2 cut(s) 140, 181
TspDTI ATGAA 2 cut(s) 117, 273
TspRI CASTG 3 cut(s) 259, 334, 340
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 347
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 4 cut(s) 138, 168, 225, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.