pycom04g01320

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0009810
Physical Location & Seq
Forward (+)
1206954 .. 1208257
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01320.3

Sequence Viewer

Length: 402 bp
ATGGCTTTCTGTAACAAAATTGGGAGCCTCTTGAAGCACAACATTTCCCAGACTGGACAAGCACCCGTGACAGCAATGCTTAATTCTGTGCGCTGCATGTCTTCCAAGCTTTTTGTTGGAGGCCTTTCATTTGGAACTAATGATGAGTCTCTTAAGGAGGCATTCTCAAGCTTTGGTGATGTGACTGAGGCAAGAGTTATCACGGACAGGGATACTGGAAGGTCTAGGGGTTTTGGATTTGTTAACTTTGCCAGTGATGATTCTGCCAGTTCAGCACTTTCTTCCATGGATGGCCAGGATTTGCATGGGCGAAACATTCGTGTCAGTTATGCCACTGAGCGAACTGGTCCTCGACCATTTAACGGTGGTGGTGGAGGGGGTGATTACCGTGGCGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

134

Amino Acids

14.06

Weight (kDa)

7.81

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 362
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 109, 171
AluI AGCT 2 cut(s) 109, 171
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 2 cut(s) 121, 292
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 188, 392
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 2 cut(s) 94, 394
BlsI GCNGC 2 cut(s) 95, 395
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 285, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 5 cut(s) 58, 220, 252, 267, 349
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 285, 388
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 177, 327
BseNI ACTGG 5 cut(s) 58, 220, 252, 267, 349
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 123, 294
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 123, 294
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 393
BspANI GGCC 2 cut(s) 123, 294
BspCNI CTCAG 2 cut(s) 178, 328
BspLI GGNNCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 5 cut(s) 58, 220, 252, 267, 349
BssECI CCNNGG 2 cut(s) 285, 388
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 365, 389
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 186, 336
BstDSI CCRYGG 2 cut(s) 285, 388
BstF5I GGATG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 93
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 123, 294
BtgI CCRYGG 2 cut(s) 285, 388
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 259, 333
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 3 cut(s) 97, 286, 305
CviJI RGCY 7 cut(s) 5, 27, 109, 123, 171, 294, 396
CviKI_1 RGCY 7 cut(s) 5, 27, 109, 123, 171, 294, 396
DdeI CTNAG 2 cut(s) 186, 336
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 100, 289, 308
FaiI YATR 4 cut(s) 98, 287, 306, 330
FatI CATG 3 cut(s) 96, 285, 304
Fnu4HI GCNGC 2 cut(s) 94, 394
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 94, 394
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 92
GluI GCNGC 2 cut(s) 94, 394
HaeIII GGCC 2 cut(s) 123, 294
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 100, 289, 308
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 2 cut(s) 107, 169
HinfI GANTC 2 cut(s) 146, 260
HpaI GTTAAC 1 cut(s) 244
HphI GGTGA 2 cut(s) 188, 392
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 365, 389
HpyCH4V TGCA 2 cut(s) 96, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 186, 336
Hsp92II CATG 3 cut(s) 100, 289, 308
HspAI GCGC 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 9 cut(s) 39, 62, 193, 201, 265, 280, 281, 308, 330
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 11, 67, 181
MboII GAAGA 2 cut(s) 93, 273
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 18, 82
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 6 cut(s) 38, 113, 151, 181, 360, 368
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 4 cut(s) 81, 153, 243, 360
Msp20I TGGCCA 1 cut(s) 294
MspCI CTTAAG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 272
NcoI CCATGG 1 cut(s) 285
NlaIII CATG 3 cut(s) 100, 289, 308
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 67, 181
NspI RCATGY 1 cut(s) 100
PceI AGGCCT 1 cut(s) 123
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 95, 395
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 1 cut(s) 347
SaqAI TTAA 4 cut(s) 81, 153, 243, 360
SatI GCNGC 2 cut(s) 94, 394
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 296
SetI ASST 3 cut(s) 111, 173, 224
SinI GGWCC 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 152, 166
SmoI CTYRAG 2 cut(s) 152, 166
Sse9I AATT 2 cut(s) 18, 82
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 225
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 365, 389
TaqI TCGA 1 cut(s) 352
TasI AATT 2 cut(s) 18, 82
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 4 cut(s) 81, 153, 243, 360
Tru9I TTAA 4 cut(s) 81, 153, 243, 360
TscAI CASTG 2 cut(s) 259, 340
TseFI GTSAC 2 cut(s) 67, 181
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 2 cut(s) 67, 181
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 259, 340
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 347
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.