Rh4DG176800

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009810
Physical Location & Seq
Reverse (-)
35064988 .. 35066790
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG176800.1

Sequence Viewer

Length: 462 bp
ATGAGTTTCGTGTGTTGTGCTGGTGTAGGCTCTTCAAAGATCCAAGAACAATCCACTTTCCAGATGGCTTTCTATAACAAGGTTGGGAGCCTTTTGAGACAAGGCATTTCCCAGAATGGACAAGCACCAATGCCATCTATGTTTAATTCTGCTCGTTACATGTCCTCCAAGCTTTTTGTTGGAGGTCTTTCGTTTTCCACTGATGACTCTTCTCTCAAAGATGCTTTTTCCGGCTTTGGTGATGTGACTGATGCAAGGGTCATCATGGATAGAGATACTGGGAGGTCGAGGGGATTTGGATTTGTTAACTTTGCCAGCGAAGATGCTGCCAATTCAGCCCTCACCGCTATGGATGGCCAGGAGTTAAATGGGCGAAGCATTCGTGTGAGTGTTGCTACCGAACGAACTGGTCCTCGACCATCATTTAATGGTGGGTACCGTGGGGGTGACAGTGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

153

Amino Acids

16.28

Weight (kDa)

7.76

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 58 - 128 7.7e-24 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AciI CCGC 1 cut(s) 345
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 355
AfaI GTAC 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 34
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 251, 334, 458
AvaII GGWCC 1 cut(s) 410
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 313
BccI CCATC 4 cut(s) 58, 142, 347, 427
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 91
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 2 cut(s) 89, 437
BmrFI CCNGG 1 cut(s) 359
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 211, 241, 313
BmuI ACTGGG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse1I ACTGG 2 cut(s) 283, 412
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 283, 412
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 435
BsiSI CCGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 345
BspANI GGCC 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 89, 437
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 435
BsrI ACTGG 2 cut(s) 283, 412
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 440, 452
Bst6I CTCTTC 2 cut(s) 37, 214
BstC8I GCNNGC 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 335, 344
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 198, 457
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 160, 265
CviJI RGCY 8 cut(s) 30, 68, 90, 172, 234, 338, 357, 456
CviKI_1 RGCY 8 cut(s) 30, 68, 90, 172, 234, 338, 357, 456
CviQI GTAC 1 cut(s) 436
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 37, 214
EarI CTCTTC 2 cut(s) 37, 214
Eco47I GGWCC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 357
FaeI CATG 2 cut(s) 163, 268
FaiI YATR 5 cut(s) 75, 140, 161, 266, 350
FatI CATG 2 cut(s) 159, 264
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 231
Hin1II CATG 2 cut(s) 163, 268
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 206
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 231
HphI GGTGA 3 cut(s) 251, 334, 458
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 440, 452
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 344
Hsp92II CATG 2 cut(s) 163, 268
KpnI GGTACC 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 9 cut(s) 6, 74, 125, 244, 264, 328, 344, 371, 393
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 211, 241, 313
MaeIII GTNAC 3 cut(s) 155, 244, 446
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 24, 201, 332
MflI RGATCY 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 2 cut(s) 145, 331
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 6 cut(s) 175, 176, 276, 282, 350, 423
Mox20I TGGCCA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 357
MseI TTAA 5 cut(s) 144, 306, 365, 426, 460
MslI CAYNNNNRTG 2 cut(s) 347, 383
Msp20I TGGCCA 1 cut(s) 357
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 335, 344
NdeII GATC 1 cut(s) 39
NlaIII CATG 2 cut(s) 163, 268
NlaIV GGNNCC 2 cut(s) 89, 437
NmuCI GTSAC 2 cut(s) 244, 446
NspI RCATGY 1 cut(s) 163
PciI ACATGT 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 37
PctI GAATGC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 89, 437
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 347, 383
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 5 cut(s) 144, 306, 365, 426, 460
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 359
SetI ASST 4 cut(s) 84, 174, 187, 287
SfaNI GCATC 3 cut(s) 211, 241, 313
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 2 cut(s) 347, 383
Sse9I AATT 2 cut(s) 145, 331
SsiI CCGC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 440, 452
TaqI TCGA 2 cut(s) 287, 415
TasI AATT 2 cut(s) 145, 331
Tru1I TTAA 5 cut(s) 144, 306, 365, 426, 460
Tru9I TTAA 5 cut(s) 144, 306, 365, 426, 460
TscAI CASTG 2 cut(s) 205, 457
TseFI GTSAC 2 cut(s) 244, 446
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 2 cut(s) 244, 446
TspRI CASTG 2 cut(s) 205, 457
VpaK11BI GGWCC 1 cut(s) 410
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.