RLG00000008203

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009810
Physical Location & Seq
Forward (+)
27029817 .. 27032298
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008203

Sequence Viewer

Length: 477 bp
ATGCCGCTCCATTTTTTTCTCTCTGAGTGTTGTGCTGGTGTAGGCTCTTCAAAGATCCAAGAACAATCCACTTTCCAGATGGCTTTCTATAACAAGGTTGGGAGCCTTTTGAGACAAGGCATTTCCCAGAATGGACAAGCACCAATGTCAGCTATGTTTAATTCCGCTCGTTATATGTCCTCCAAGCTTTTTGTTGGAGGTCTTTCGTTTTCCACTGATGACTCTTCTCTCAAAGATGCTTTTTCCGGCTTTGGTGATGTGACTGATGCAAAGGTCATCATGGATAGAGATACTGGGAGGTCGAGGGGATTTGGATTTGTTAACTTTGCCAGCGAAGATGCTGCCAATTCAGCCCTCACCGCCATGGATGGCCAGGAGTTAAATGGGCGAAGCATTCGTGTGAGTGTCGCTACTGAAAGAACTGGTCCTCGACCATCATTTAATGGTGGTTACCGTGGGGGTGACAGTGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

159

Amino Acids

16.87

Weight (kDa)

6.56

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 63 - 133 1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 7, 167
AciI CCGC 3 cut(s) 5, 165, 360
AclWI GGATC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 370
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 2 cut(s) 152, 187
AluI AGCT 2 cut(s) 152, 187
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 49
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 266, 349, 473
AvaII GGWCC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 372
BbvI GCAGC 1 cut(s) 328
BccI CCATC 3 cut(s) 73, 362, 442
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 106
BisI GCNGC 2 cut(s) 5, 342
BlsI GCNGC 2 cut(s) 6, 343
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 3 cut(s) 226, 256, 328
BmuI ACTGGG 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 363, 454
Bse1I ACTGG 2 cut(s) 298, 427
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 363, 454
BseGI GGATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 298, 427
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 54
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 3 cut(s) 5, 165, 360
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 52
BsrBI CCGCTC 2 cut(s) 7, 167
BsrI ACTGG 2 cut(s) 298, 427
BssECI CCNNGG 2 cut(s) 363, 454
BssMI GATC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 455, 467
Bst6I CTCTTC 2 cut(s) 52, 229
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 2 cut(s) 363, 454
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 350, 359
BstNI CCWGG 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 372
BtgI CCRYGG 2 cut(s) 363, 454
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 213, 472
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 425
CviAII CATG 2 cut(s) 280, 364
CviJI RGCY 9 cut(s) 45, 83, 105, 152, 187, 249, 353, 372, 471
CviKI_1 RGCY 9 cut(s) 45, 83, 105, 152, 187, 249, 353, 372, 471
DdeI CTNAG 1 cut(s) 24
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 52, 229
EarI CTCTTC 2 cut(s) 52, 229
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 283, 367
FaiI YATR 6 cut(s) 90, 155, 174, 176, 281, 365
FatI CATG 2 cut(s) 279, 363
Fnu4HI GCNGC 2 cut(s) 5, 342
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 5, 342
GluI GCNGC 2 cut(s) 5, 342
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 246
Hin1II CATG 2 cut(s) 283, 367
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 221
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 1 cut(s) 246
HphI GGTGA 3 cut(s) 266, 349, 473
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 455, 467
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 359
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 2 cut(s) 283, 367
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 54
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 12, 102
LpnPI CCDG 9 cut(s) 21, 89, 140, 259, 279, 343, 359, 386, 408
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 3 cut(s) 226, 256, 328
MaeIII GTNAC 3 cut(s) 259, 449, 461
MalI GATC 1 cut(s) 56
MbiI CCGCTC 2 cut(s) 7, 167
MboI GATC 1 cut(s) 54
MboII GAAGA 3 cut(s) 39, 216, 347
MflI RGATCY 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 2 cut(s) 160, 346
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 6 cut(s) 190, 191, 291, 297, 365, 438
Mox20I TGGCCA 1 cut(s) 372
MscI TGGCCA 1 cut(s) 372
MseI TTAA 5 cut(s) 159, 321, 380, 441, 475
MslI CAYNNNNRTG 2 cut(s) 362, 398
Msp20I TGGCCA 1 cut(s) 372
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 350, 359
NcoI CCATGG 1 cut(s) 363
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 283, 367
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 2 cut(s) 259, 461
PciSI GCTCTTC 1 cut(s) 52
PctI GAATGC 1 cut(s) 393
PkrI GCNGC 2 cut(s) 6, 343
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 372
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 425
PsuI RGATCY 1 cut(s) 54
RseI CAYNNNNRTG 2 cut(s) 362, 398
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 5 cut(s) 159, 321, 380, 441, 475
SatI GCNGC 2 cut(s) 5, 342
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 374
SetI ASST 6 cut(s) 99, 154, 189, 202, 276, 302
SfaNI GCATC 3 cut(s) 226, 256, 328
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 2 cut(s) 362, 398
Sse9I AATT 2 cut(s) 160, 346
SsiI CCGC 3 cut(s) 5, 165, 360
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 455, 467
TaqI TCGA 2 cut(s) 302, 430
TasI AATT 2 cut(s) 160, 346
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 5 cut(s) 159, 321, 380, 441, 475
Tru9I TTAA 5 cut(s) 159, 321, 380, 441, 475
TscAI CASTG 2 cut(s) 220, 472
TseFI GTSAC 2 cut(s) 259, 461
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 2 cut(s) 259, 461
TspRI CASTG 2 cut(s) 220, 472
VpaK11BI GGWCC 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 2 cut(s) 76, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.