Rorug04G0122000

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009810
Physical Location & Seq
Reverse (-)
19354804 .. 19355180
377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0122000.1

Sequence Viewer

Length: 327 bp
ATGGCACGCCCCTTTTCTTTTGTACGTTCTGCCTTACACATGAAAATTGAAGCCATGAGAGCTGGTCTCTTGCTTGCTATTCACCAAGGTATGATCAATATTGATATTGAAACTGATTGTACTATGGCTGTCACTGCTCTTAATAGAGACACAGAAGACCTCTCTGAAGTGGGCTGTATTGTGGAGGATTGCAAGACCTACTTGAGTGCTATTCCTGGCGCTAAGGTACAGTCTATATATTGTGAAGCGAATGACGAGTATTGGTTAGAGGAGGCTCCTGCTATTATTCAGGATGCACTCTATGAGGATTCTTGTACTACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

4.28

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 10 - 84 3.2e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 4 cut(s) 24, 121, 228, 316
AgsI TTSAA 2 cut(s) 50, 110
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 71, 141
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 71, 141
BfoI RGCGCY 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 51, 83
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 71, 141
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 7, 75
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 2 cut(s) 71, 141
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 59, 134
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 7, 75
CfoI GCGC 1 cut(s) 221
Csp6I GTAC 4 cut(s) 23, 120, 227, 315
CviAII CATG 2 cut(s) 40, 55
CviJI RGCY 5 cut(s) 53, 62, 128, 174, 275
CviKI_1 RGCY 5 cut(s) 53, 62, 128, 174, 275
CviQI GTAC 4 cut(s) 23, 120, 227, 315
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 43, 58
FaiI YATR 7 cut(s) 41, 56, 92, 125, 236, 238, 303
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 2 cut(s) 39, 54
FbaI TGATCA 1 cut(s) 93
FokI GGATG 1 cut(s) 305
GlaI GCGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 222
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 43, 58
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 1 cut(s) 308
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 192, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 134
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 2 cut(s) 43, 58
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 48, 201, 228, 275, 291
LweI GCATC 1 cut(s) 283
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 167
MluCI AATT 1 cut(s) 45
MnlI CCTC 5 cut(s) 170, 178, 262, 265, 298
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 59, 134
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 43, 58
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 276
RsaI GTAC 4 cut(s) 24, 121, 228, 316
RsaNI GTAC 4 cut(s) 23, 120, 227, 315
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 216
SetI ASST 6 cut(s) 28, 64, 91, 162, 200, 228
SfaNI GCATC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 45
SspI AATATT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 28
TasI AATT 1 cut(s) 45
TatI WGTACW 2 cut(s) 119, 314
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.