AT3G24080

KRI1-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009859
Physical Location & Seq
Reverse (-)
8694867 .. 8697142
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24080.3

Sequence Viewer

Length: 1917 bp
ATGATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGAACTTTCACAGTTCAAAGGTTTCGATGTCGATAACGATTTCGCTAAGAGATTGTTGCACAACAAGGAACGCGAGGATCTTCAGCGATACGAAGAGAAGAATAAGCAAGGTCTCTTCAGCGAGTCCGAGGAAGAGCCTGAGACGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCAATCTCAAATTCGTTGATTTGTTGATTAAGGTAAAGAAAAAGGATCCTATTATTAAGGACAAAGATGCTAAGTTCTATGAGTATGATGATGAGAGTAGTGAAGAAGATGAGGTTGATAAGAAGGATACGAAAAAGAAGAAGAAGAAGAAGAAGATGTATTTGAAAGATGTTCAGGCACAGCATTTGCTTGAGGGAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAAGTTAGGACTTACGCTGAGGAGCAGAAAGAAACGAGGAAAGCTGTGACTGATGCTTGGAAAGCTGAAGGGAACGAGAGTGGTGAAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATGATGATGTGGAGGTTGATGAGGAGTTAGCTAAGAAAATGGATGAGTATTATGGTGATGAAGCTGAGGCTACTGAGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGAGGAGAGGGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGGTTTGGGATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTAAACTATAGGCATGAAGATGAGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGAAGGATAATGCGAGGAAGGCGCAGAGGAAGAATAAAGACGAGAGGATGAAGAAGGAGGATGATGTGAGGAAAGAGGAGTTGAAGCGGTTGAAGAATGTTAAGAAGAAGGAGATTAAGGAGAAGATGAAGAAGGTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGATGCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGATGATGAAAGCTGCGTTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTGATGAGGATGATGATGGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTCCTAAAGATTGGGATGTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTTTGAAGCATAAGGAAAACATGTTGGGTATTGATGAAGAAGAAGAAGAAGATGAAGAGGAAGAGGAAGACGAAGAAGAAGAGGAAGTAGATGAGGAGAAGGAGGCAGAGGGTAAGAGGAAGAGAAAGCGAAAAACGTCTCTTGTACAAAAGACGAAAGAAGCTTTGATGGAGGAGTACTACAAGCTAGATTATGAGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAGATTTGAACTGGATACAGGAGAGATACTTACCTTAGATGACGCAGAGCTGAACCAATATGTGCCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGGCATAAGGTCAAGGAGCAGAAACGTAAGATCAGGGAGTTGTGGGAGGGTAAACACGATGAGAAGAAAAGCAAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACCGAAAGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTAAACTATCGAGAAAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTCCTAGCAGAATGGCTGCGTATGGGAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kri1 Kri1_C

Protein Analysis

638

Amino Acids

74.96

Weight (kDa)

4.73

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kri1 PF05178 309 - 408 1.4e-19 KRI1-like family
Kri1_C PF12936 481 - 565 4.1e-29 KRI1-like family C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 10, 970, 1275
AclWI GGATC 5 cut(s) 126, 263, 276, 774, 1085
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 3 cut(s) 107, 142, 540
AcyI GRCGYC 1 cut(s) 1861
AfaI GTAC 4 cut(s) 1139, 1434, 1466, 1530
AflIII ACRYGT 1 cut(s) 1308
AjnI CCWGG 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 659, 691
AluBI AGCT 9 cut(s) 497, 518, 608, 641, 1121, 1451, 1474, 1588, 1879
AluI AGCT 9 cut(s) 497, 518, 608, 641, 1121, 1451, 1474, 1588, 1879
Alw26I GTCTC 4 cut(s) 158, 176, 1431, 1745
AlwI GGATC 5 cut(s) 126, 263, 276, 774, 1085
AoxI GGCC 2 cut(s) 11, 1845
ApeKI GCWGC 3 cut(s) 1121, 1271, 1898
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 7 cut(s) 548, 644, 691, 731, 889, 1157, 1657
AvaII GGWCC 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 1095
BamHI GGATCC 1 cut(s) 268
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 2 cut(s) 796, 1362
BbvI GCAGC 3 cut(s) 1108, 1283, 1885
BccI CCATC 3 cut(s) 1037, 1178, 1450
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 717
BciVI GTATCC 3 cut(s) 343, 1480, 1546
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 4 cut(s) 158, 176, 1431, 1745
BfaI CTAG 3 cut(s) 858, 1475, 1887
BfmI CTRYAG 1 cut(s) 811
BfuI GTATCC 3 cut(s) 343, 1480, 1546
BisI GCNGC 5 cut(s) 11, 1122, 1272, 1275, 1899
BlsI GCNGC 5 cut(s) 12, 1123, 1273, 1276, 1900
BmcAI AGTACT 2 cut(s) 1139, 1466
Bme1390I CCNGG 1 cut(s) 717
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 3 cut(s) 270, 714, 1620
BmrFI CCNGG 1 cut(s) 717
BmsI GCATC 3 cut(s) 280, 496, 1054
BpiI GAAGAC 2 cut(s) 796, 1362
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 1861
BsaI GGTCTC 2 cut(s) 158, 1745
BsaJI CCNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 1554
Bse21I CCTNAGG 1 cut(s) 1095
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 8 cut(s) 625, 754, 936, 949, 1048, 1183, 1249, 1267
BseJI GATNNNNATC 1 cut(s) 204
BseNI ACTGG 1 cut(s) 1554
BseRI GAGGAG 9 cut(s) 461, 488, 614, 719, 974, 1112, 1163, 1397, 1475
BseX3I CGGCCG 1 cut(s) 11
BseXI GCAGC 3 cut(s) 1108, 1283, 1885
BseYI CCCAGC 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 13, 1847
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 851
BsmAI GTCTC 4 cut(s) 158, 176, 1431, 1745
BsmBI CGTCTC 2 cut(s) 176, 1431
BsmFI GGGAC 1 cut(s) 851
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 2 cut(s) 13, 1847
Bso31I GGTCTC 2 cut(s) 158, 1745
Bsp1407I TGTACA 1 cut(s) 1432
Bsp143I GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
BspACI CCGC 3 cut(s) 10, 970, 1275
BspANI GGCC 2 cut(s) 13, 1847
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 270, 714, 1620
BspPI GGATC 5 cut(s) 126, 263, 276, 774, 1085
BspQI GCTCTTC 1 cut(s) 168
BspTNI GGTCTC 2 cut(s) 158, 1745
BsrGI TGTACA 1 cut(s) 1432
BsrI ACTGG 1 cut(s) 1554
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
BssNI GRCGYC 1 cut(s) 1861
BssSI CACGAG 1 cut(s) 755
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 4 cut(s) 54, 687, 795, 844
BstACI GRCGYC 1 cut(s) 1861
BstAUI TGTACA 1 cut(s) 1432
BstF5I GGATG 8 cut(s) 625, 754, 936, 949, 1048, 1183, 1249, 1267
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 7 cut(s) 121, 208, 271, 754, 769, 1093, 1683
BstMAI GTCTC 4 cut(s) 158, 176, 1431, 1745
BstMBI GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 2 cut(s) 515, 902
BstNI CCWGG 1 cut(s) 717
BstNSI RCATGY 1 cut(s) 1312
BstSCI CCNGG 1 cut(s) 715
BstSFI CTRYAG 1 cut(s) 811
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 1108, 1283, 1885
BstV2I GAAGAC 2 cut(s) 796, 1362
BstX2I RGATCY 2 cut(s) 118, 268
BstYI RGATCY 2 cut(s) 118, 268
BstZI CGGCCG 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 1095
BsuI GTATCC 3 cut(s) 343, 1480, 1546
BsuRI GGCC 2 cut(s) 13, 1847
BtsCI GGATG 8 cut(s) 625, 754, 936, 949, 1048, 1183, 1249, 1267
BtsIMutI CAGTG 1 cut(s) 840
CfoI GCGC 1 cut(s) 907
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 2 cut(s) 1589, 1850
Csp6I GTAC 4 cut(s) 1138, 1433, 1465, 1529
CviAII CATG 2 cut(s) 818, 1309
CviQI GTAC 4 cut(s) 1138, 1433, 1465, 1529
DpnI GATC 7 cut(s) 120, 207, 270, 753, 768, 1092, 1682
DpnII GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
EaeI YGGCCR 1 cut(s) 11
EagI CGGCCG 1 cut(s) 11
EclXI CGGCCG 1 cut(s) 11
Eco31I GGTCTC 2 cut(s) 158, 1745
Eco47I GGWCC 1 cut(s) 422
Eco52I CGGCCG 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 107, 142, 540
Eco81I CCTNAGG 1 cut(s) 1095
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 715
Esp3I CGTCTC 2 cut(s) 176, 1431
FaeI CATG 2 cut(s) 821, 1312
FaqI GGGAC 1 cut(s) 851
FatI CATG 2 cut(s) 817, 1308
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 11, 1122, 1272, 1275, 1899
FokI GGATG 8 cut(s) 632, 761, 943, 956, 1055, 1190, 1256, 1274
Fsp4HI GCNGC 5 cut(s) 11, 1122, 1272, 1275, 1899
FspBI CTAG 3 cut(s) 858, 1475, 1887
GlaI GCGC 1 cut(s) 906
GluI GCNGC 5 cut(s) 11, 1122, 1272, 1275, 1899
GsaI CCCAGC 1 cut(s) 837
HaeIII GGCC 2 cut(s) 13, 1847
HapII CCGG 1 cut(s) 197
HgaI GACGC 2 cut(s) 1589, 1850
HhaI GCGC 1 cut(s) 907
Hin1I GRCGYC 1 cut(s) 1861
Hin1II CATG 2 cut(s) 821, 1312
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 2 cut(s) 1449, 1877
HinfI GANTC 5 cut(s) 164, 188, 200, 655, 1154
HpaII CCGG 1 cut(s) 197
HphI GGTGA 7 cut(s) 548, 644, 691, 731, 889, 1157, 1657
Hpy166II GTNNAC 1 cut(s) 1703
Hpy188I TCNGA 4 cut(s) 169, 193, 205, 1159
Hpy188III TCNNGA 6 cut(s) 218, 425, 755, 770, 1094, 1839
Hpy8I GTNNAC 1 cut(s) 1703
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 4 cut(s) 54, 687, 795, 844
HpyCH4IV ACGT 2 cut(s) 1424, 1675
HpyCH4V TGCA 2 cut(s) 100, 1271
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 902
HpySE526I ACGT 2 cut(s) 1424, 1675
Hsp92I GRCGYC 1 cut(s) 1861
Hsp92II CATG 2 cut(s) 821, 1312
HspAI GCGC 1 cut(s) 905
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 3 cut(s) 475, 1624, 1666
Lsp1109I GCAGC 3 cut(s) 1108, 1283, 1885
LweI GCATC 3 cut(s) 280, 496, 1054
MaeI CTAG 3 cut(s) 858, 1475, 1887
MaeII ACGT 2 cut(s) 1424, 1675
MaeIII GTNAC 2 cut(s) 499, 1246
MalI GATC 7 cut(s) 120, 207, 270, 753, 768, 1092, 1682
MboI GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
MfeI CAATTG 1 cut(s) 1491
MflI RGATCY 2 cut(s) 118, 268
MluCI AATT 4 cut(s) 233, 1217, 1491, 1499
MlyI GAGTC 2 cut(s) 173, 197
MmeI TCCRAC 1 cut(s) 777
MseI TTAA 7 cut(s) 252, 279, 806, 984, 999, 1038, 1515
MslI CAYNNNNRTG 2 cut(s) 822, 845
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 717
MunI CAATTG 1 cut(s) 1491
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 1 cut(s) 717
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 515, 902
NdeII GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
NlaIII CATG 2 cut(s) 821, 1312
NlaIV GGNNCC 3 cut(s) 270, 714, 1620
NmuCI GTSAC 2 cut(s) 499, 1246
NspI RCATGY 1 cut(s) 1312
PciI ACATGT 1 cut(s) 1308
PciSI GCTCTTC 1 cut(s) 168
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 3 cut(s) 200, 655, 1154
PflFI GACNNNGTC 1 cut(s) 187
PkrI GCNGC 5 cut(s) 12, 1123, 1273, 1276, 1900
PleI GAGTC 2 cut(s) 172, 196
PpsI GAGTC 2 cut(s) 172, 196
PpuMI RGGWCCY 1 cut(s) 422
PscI ACATGT 1 cut(s) 1308
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 270, 714, 1620
PspPI GGNCC 1 cut(s) 422
PspPPI RGGWCCY 1 cut(s) 422
PsuI RGATCY 2 cut(s) 118, 268
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 4 cut(s) 1139, 1434, 1466, 1530
RsaNI GTAC 4 cut(s) 1138, 1433, 1465, 1529
RseI CAYNNNNRTG 2 cut(s) 822, 845
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 7 cut(s) 252, 279, 806, 984, 999, 1038, 1515
SatI GCNGC 5 cut(s) 11, 1122, 1272, 1275, 1899
Sau3AI GATC 7 cut(s) 118, 205, 268, 751, 766, 1090, 1680
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 2 cut(s) 1139, 1466
SchI GAGTC 2 cut(s) 173, 197
ScrFI CCNGG 1 cut(s) 717
SfaNI GCATC 3 cut(s) 280, 496, 1054
SfcI CTRYAG 1 cut(s) 811
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 822, 845
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 4 cut(s) 233, 1217, 1491, 1499
SsiI CCGC 3 cut(s) 10, 970, 1275
SspMI CTAG 3 cut(s) 858, 1475, 1887
StyD4I CCNGG 1 cut(s) 715
TaaI ACNGT 4 cut(s) 54, 687, 795, 844
TaiI ACGT 2 cut(s) 1427, 1678
TaqI TCGA 3 cut(s) 66, 72, 1838
TasI AATT 4 cut(s) 233, 1217, 1491, 1499
TatI WGTACW 4 cut(s) 1137, 1432, 1464, 1528
TauI GCSGC 2 cut(s) 13, 1277
TfiI GAWTC 3 cut(s) 200, 655, 1154
Tru1I TTAA 7 cut(s) 252, 279, 806, 984, 999, 1038, 1515
Tru9I TTAA 7 cut(s) 252, 279, 806, 984, 999, 1038, 1515
TscAI CASTG 1 cut(s) 847
TseFI GTSAC 2 cut(s) 499, 1246
TseI GCWGC 3 cut(s) 1121, 1271, 1898
Tsp45I GTSAC 2 cut(s) 499, 1246
TspDTI ATGAA 8 cut(s) 651, 834, 947, 1025, 1130, 1230, 1338, 1356
TspGWI ACGGA 2 cut(s) 200, 1047
TspRI CASTG 1 cut(s) 847
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 1312
XspI CTAG 3 cut(s) 858, 1475, 1887
ZrmI AGTACT 2 cut(s) 1139, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.