Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009859

Physical Location & Seq

Genomic Coordinates Forward (+)

24393898 .. 24395659

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g24010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGGGCGTTCTTCAACTATTTGACGGCGGCAGCGACTCCGAGAACGACGATGTACCGCAGCTCAAAATCAATGAAGATTTCCGCTATGGGGAGCTGAAGAAGCGAGGCCTCGTAGCTGACCCCTCCGATGATTCAGACTCTGAACCGGATTTTGAATCGGACGACGACTACGTCCATGTCACCAATTCCAAGAAGAGAGAATTGGAGTTTTTGGACGATGTTGTTTTGTTTAATTCTGATGGAACCGAAATTATCGGAAACACTGGAGGAGAGGGAGAGGGAGAGGGAAAGGCGAAGAATAAGAGGAAGATGTACTTGAAAGATGTTAACGCTAAGCATTTGATCGAGGACGGCCTGGAACTGGCGGAGGAGGATGACAAAAACATTGGTAAAAACAGTAAGGTCTACAACGAAGAACAAGAGCGGATAAGGAGAGAATTCTTACAGGCCGCCGCAGCCGAGGAGGATGATGGTGGTGAGTTTTTGATAGAGAAGAACAAGAATGCTGCGGGGGATGATGATGGTGATAGTGTTGATAATGATCAGTTTGAGAAGGCATTAGATGAGTGTTTCCCCGAATCTGATGAAAATGCTGTGTTTCTCAAGAAGTTCTTTAAAGATCAGCTGTGGAAGGAGGATAAGGATCGATCAAAAACCGAGCTAAAGGAGGAGGATTTGGAGATGGTGTCTGAGGATGAGATGGAGATCGAAAGGCAGGAGGAGTATGAGCACAGGTTCCAGGAGAATGCAGGTGATCGGATTATGGGGCATTCCAGGCAAGTTGAGGGGTCGGTGAGGAAGAAGGTCAAGGCGAGGAAGGAGCAGAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAATGATGAGAAGGTTAAGAAGATAATGGAGATTGCGGGACTTAAGGAGGGGAAGGTGTCTACATTTAATCCAAAGGAGTTGGAGAAGGAATTTGATCCACAAGAGTATGATAGGATGATGAAGAAGGCTTTTGGTGAGGAGTATTATCAGGCAGAGGATGCTGACTTAGAGCATTATAGTGATATGGACGAGTATGATGATGAGATTGAGAAACCGGACTTTGATAAGGAGGATGAGTTGCTTGGGCTTCCTAAAGGTTGGGATACTGTTGGGTCTGGTGATGGGTTCTTAGCTGCAAGGGAGAAGGCTTTGAAGCAGAAAAAGGAAAATGTTGGTGACCATGAGGAAGAGGAAGAGGAAGTGGAAGTGGAAGAGGAAGAGGAAGAGGAAGATGAAGATGAAGAGGAAGGAAAAATGAGTGAGGAAGATAAACAAGAGAAAAAGCGTAAACTAGGTTTATTGGAGAGAGCTCAGAAGGAGATGATGGATGAATACTATAAGTTGGATTATGAGGATACAATTGGAGAATTGAAGACCAGATTCAAGTATGCTAAAATAAAACCTAATAGATATGGCTTGGCTACTGCTGAGATATTAGCGATGGATGAAAAGGAGTTGAATCAATATGTGTCTTTAAAGAAGCTTGCCCCTTATACAGAGAAAGAGTGGAAGGTACCAAACAACAAGAGAATGGAGATAAAGCAGAAAGCTAAAGAGATTTTCAGACAAGGAAATGTGGGTAATAAAAAAATCGCAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kri1 Kri1_C

Protein Analysis

559

Amino Acids

65.15

Weight (kDa)

4.63

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kri1	PF05178	281 - 383	5.2e-19	KRI1-like family
Kri1_C	PF12936	463 - 544	2.9e-29	KRI1-like family C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24080 AT3G24080 AT3G24080 AT3G24080
fragaria_vesca	FvH4_6g00350
malus_domestica	MD04G1246500.v1.1 MD12G1263700.v1.1
prunus_persica	Prupe.6G362700_v2.0.a1
pyrus_communis	pycom04g21710 pycom04g21720 pycom12g24010
rosa_chinensis	RchiOBHm_Chr3g0447651
rosa_multiflora	Rmu_sc0029211.1_g000001 Rmu_ssc0000391.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425860
rosa_rugosa	Rorug02G0604000
rosa_samantha	Rh3AG004000 Rh3BG003600 Rh3CG003900 Rh3DG003900
rosa_wichuraiana	Rw3G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	740
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	740
Acc65I	GGTACC	1 cut(s)	1585
AccB1I	GGYRCC	1 cut(s)	1585
AccBSI	CCGCTC	1 cut(s)	424
AccI	GTMKAC	2 cut(s)	405, 971
AciI	CCGC	9 cut(s)	27, 56, 82, 365, 424, 450, 453, 509, 947
AclWI	GGATC	2 cut(s)	651, 1001
AcsI	RAATTY	3 cut(s)	437, 895, 1001
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	54, 314, 1587
AfiI	CCNNNNNNNGG	2 cut(s)	88, 361
AflII	CTTAAG	1 cut(s)	953
AgsI	TTSAA	9 cut(s)	14, 155, 319, 892, 901, 1225, 1444, 1456, 1531
AjnI	CCWGG	3 cut(s)	354, 738, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
Alw21I	GWGCWC	2 cut(s)	732, 1384
AlwI	GGATC	2 cut(s)	651, 1001
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	3 cut(s)	106, 352, 447
ApeKI	GCWGC	5 cut(s)	30, 58, 455, 506, 1205
ApoI	RAATTY	3 cut(s)	437, 895, 1001
Asp718I	GGTACC	1 cut(s)	1585
AsuHPI	GGTGA	8 cut(s)	172, 488, 536, 764, 805, 1058, 1202, 1259
BanI	GGYRCC	1 cut(s)	1585
BanII	GRGCYC	1 cut(s)	1384
BbsI	GAAGAC	1 cut(s)	1451
Bbv12I	GWGCWC	2 cut(s)	732, 1384
BbvI	GCAGC	5 cut(s)	42, 70, 467, 493, 1192
BccI	CCATC	9 cut(s)	233, 464, 515, 676, 694, 841, 1187, 1390, 1507
BceAI	ACGGC	2 cut(s)	40, 367
BciT130I	CCWGG	3 cut(s)	356, 740, 775
BciVI	GTATCC	2 cut(s)	1168, 1420
BclI	TGATCA	1 cut(s)	541
BfaI	CTAG	1 cut(s)	1364
BfrI	CTTAAG	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	740
BfuI	GTATCC	2 cut(s)	1168, 1420
BisI	GCNGC	8 cut(s)	28, 31, 59, 450, 453, 456, 507, 1206
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	8 cut(s)	29, 32, 60, 451, 454, 457, 508, 1207
Bme1390I	CCNGG	3 cut(s)	356, 740, 775
BmiI	GGNNCC	3 cut(s)	244, 737, 1587
BmrFI	CCNGG	3 cut(s)	356, 740, 775
BmsI	GCATC	1 cut(s)	1060
BpiI	GAAGAC	1 cut(s)	1451
BpmI	CTGGAG	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	646
BsaBI	GATNNNNATC	3 cut(s)	540, 642, 704
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	2 cut(s)	145, 1126
BsaXI	ACNNNNNCTCC	6 cut(s)	671, 701, 863, 893, 1133, 1163
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 361
Bse1I	ACTGG	2 cut(s)	268, 366
Bse8I	GATNNNNATC	3 cut(s)	540, 642, 704
BseBI	CCWGG	3 cut(s)	356, 740, 775
BseCI	ATCGAT	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	459
BseJI	GATNNNNATC	3 cut(s)	540, 642, 704
BseLI	CCNNNNNNNGG	2 cut(s)	88, 361
BseMII	CTCAG	3 cut(s)	681, 1397, 1491
BseNI	ACTGG	2 cut(s)	268, 366
BseRI	GAGGAG	9 cut(s)	282, 383, 476, 683, 734, 854, 887, 890, 1064
BseXI	GCAGC	5 cut(s)	42, 70, 467, 493, 1192
BshFI	GGCC	3 cut(s)	108, 354, 449
BshNI	GGYRCC	1 cut(s)	1585
BshVI	ATCGAT	1 cut(s)	646
BsiHKAI	GWGCWC	2 cut(s)	732, 1384
BsiSI	CCGG	2 cut(s)	146, 1127
BslFI	GGGAC	1 cut(s)	963
BslI	CCNNNNNNNGG	2 cut(s)	88, 361
BsmFI	GGGAC	1 cut(s)	963
BsmI	GAATGC	3 cut(s)	508, 751, 769
BsnI	GGCC	3 cut(s)	108, 354, 449
Bsp1286I	GDGCHC	2 cut(s)	732, 1384
Bsp143I	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	9 cut(s)	27, 56, 82, 365, 424, 450, 453, 509, 947
BspANI	GGCC	3 cut(s)	108, 354, 449
BspCNI	CTCAG	3 cut(s)	682, 1396, 1492
BspDI	ATCGAT	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	244, 737, 1587
BspMI	ACCTGC	1 cut(s)	740
BspPI	GGATC	2 cut(s)	651, 1001
BspQI	GCTCTTC	1 cut(s)	824
BspT107I	GGYRCC	1 cut(s)	1585
BspTI	CTTAAG	1 cut(s)	953
BsrBI	CCGCTC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	268, 366
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
Bst2UI	CCWGG	3 cut(s)	356, 740, 775
Bst4CI	ACNGT	2 cut(s)	398, 1180
Bst6I	CTCTTC	8 cut(s)	188, 824, 1254, 1260, 1278, 1284, 1290, 1308
BstAFI	CTTAAG	1 cut(s)	953
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	1557
BstDEI	CTNAG	6 cut(s)	333, 690, 1078, 1201, 1383, 1500
BstEII	GGTNACC	1 cut(s)	1247
BstKTI	GATC	8 cut(s)	345, 544, 622, 646, 650, 708, 757, 1009
BstMBI	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 455, 775, 1070
BstNI	CCWGG	3 cut(s)	356, 740, 775
BstPI	GGTNACC	1 cut(s)	1247
BstSCI	CCNGG	3 cut(s)	354, 738, 773
BstV1I	GCAGC	5 cut(s)	42, 70, 467, 493, 1192
BstV2I	GAAGAC	1 cut(s)	1451
Bsu15I	ATCGAT	1 cut(s)	646
BsuI	GTATCC	2 cut(s)	1168, 1420
BsuRI	GGCC	3 cut(s)	108, 354, 449
BsuTUI	ATCGAT	1 cut(s)	646
BtgZI	GCGATG	1 cut(s)	1526
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	1 cut(s)	1557
CaiI	CAGNNNCTG	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	53, 313, 1586
CviAII	CATG	2 cut(s)	176, 1253
CviQI	GTAC	3 cut(s)	53, 313, 1586
DdeI	CTNAG	6 cut(s)	333, 690, 1078, 1201, 1383, 1500
DpnI	GATC	8 cut(s)	344, 543, 621, 645, 649, 707, 756, 1008
DpnII	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
DraI	TTTAAA	2 cut(s)	616, 1548
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	8 cut(s)	188, 824, 1254, 1260, 1278, 1284, 1290, 1308
EarI	CTCTTC	8 cut(s)	188, 824, 1254, 1260, 1278, 1284, 1290, 1308
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	1382
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	1384
Eco53kI	GAGCTC	1 cut(s)	1382
Eco57I	CTGAAG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	1247
EcoICRI	GAGCTC	1 cut(s)	1382
EcoO65I	GGTNACC	1 cut(s)	1247
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	3 cut(s)	354, 738, 773
EcoT38I	GRGCYC	1 cut(s)	1384
FaeI	CATG	2 cut(s)	179, 1256
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 596, 628
FaqI	GGGAC	1 cut(s)	963
FatI	CATG	2 cut(s)	175, 1252
FauI	CCCGC	2 cut(s)	502, 940
FbaI	TGATCA	1 cut(s)	541
FblI	GTMKAC	2 cut(s)	405, 971
Fnu4HI	GCNGC	8 cut(s)	28, 31, 59, 450, 453, 456, 507, 1206
FriOI	GRGCYC	1 cut(s)	1384
Fsp4HI	GCNGC	8 cut(s)	28, 31, 59, 450, 453, 456, 507, 1206
FspBI	CTAG	1 cut(s)	1364
GluI	GCNGC	8 cut(s)	28, 31, 59, 450, 453, 456, 507, 1206
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	108, 354, 449
HapII	CCGG	2 cut(s)	146, 1127
Hin1II	CATG	2 cut(s)	179, 1256
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	1553
HinfI	GANTC	7 cut(s)	35, 131, 137, 155, 578, 1452, 1531
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	146, 1127
HphI	GGTGA	8 cut(s)	172, 488, 536, 764, 805, 1058, 1202, 1259
Hpy166II	GTNNAC	4 cut(s)	328, 406, 972, 1361
Hpy188III	TCNNGA	1 cut(s)	604
Hpy8I	GTNNAC	4 cut(s)	328, 406, 972, 1361
Hpy99I	CGWCG	2 cut(s)	50, 167
HpyCH4III	ACNGT	2 cut(s)	398, 1180
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	749, 857, 1208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 455, 775, 1070
HpyF3I	CTNAG	6 cut(s)	333, 690, 1078, 1201, 1383, 1500
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	179, 1256
KpnI	GGTACC	1 cut(s)	1589
Ksp22I	TGATCA	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	2 cut(s)	91, 820
Lsp1109I	GCAGC	5 cut(s)	42, 70, 467, 493, 1192
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	1 cut(s)	1364
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	178, 1247
MalI	GATC	8 cut(s)	344, 543, 621, 645, 649, 707, 756, 1008
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
MfeI	CAATTG	1 cut(s)	1431
MhlI	GDGCHC	2 cut(s)	732, 1384
MluCI	AATT	9 cut(s)	184, 200, 232, 249, 437, 895, 1001, 1431, 1439
MlyI	GAGTC	2 cut(s)	29, 131
MmeI	TCCRAC	3 cut(s)	843, 972, 1395
MseI	TTAA	7 cut(s)	231, 327, 615, 927, 954, 978, 1547
MslI	CAYNNNNRTG	1 cut(s)	1089
MspA1I	CMGCKG	1 cut(s)	625
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	2 cut(s)	146, 1127
MspR9I	CCNGG	3 cut(s)	356, 740, 775
MunI	CAATTG	1 cut(s)	1431
Mva1269I	GAATGC	3 cut(s)	508, 751, 769
MvaI	CCWGG	3 cut(s)	356, 740, 775
MwoI	GCNNNNNNNGC	4 cut(s)	100, 455, 775, 1070
NdeII	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
NlaIII	CATG	2 cut(s)	179, 1256
NlaIV	GGNNCC	3 cut(s)	244, 737, 1587
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	178, 1247
PaqCI	CACCTGC	1 cut(s)	740
PceI	AGGCCT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 168
PctI	GAATGC	3 cut(s)	508, 751, 769
PfeI	GAWTC	5 cut(s)	131, 155, 578, 1452, 1531
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	8 cut(s)	29, 32, 60, 451, 454, 457, 508, 1207
PleI	GAGTC	2 cut(s)	29, 131
PpsI	GAGTC	2 cut(s)	29, 131
Psp124BI	GAGCTC	1 cut(s)	1384
Psp6I	CCWGG	3 cut(s)	354, 738, 773
PspEI	GGTNACC	1 cut(s)	1247
PspGI	CCWGG	3 cut(s)	354, 738, 773
PspN4I	GGNNCC	3 cut(s)	244, 737, 1587
PstNI	CAGNNNCTG	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	3 cut(s)	54, 314, 1587
RsaNI	GTAC	3 cut(s)	53, 313, 1586
RseI	CAYNNNNRTG	1 cut(s)	1089
SacI	GAGCTC	1 cut(s)	1384
SapI	GCTCTTC	1 cut(s)	824
SaqAI	TTAA	7 cut(s)	231, 327, 615, 927, 954, 978, 1547
SatI	GCNGC	8 cut(s)	28, 31, 59, 450, 453, 456, 507, 1206
Sau3AI	GATC	8 cut(s)	342, 541, 619, 643, 647, 705, 754, 1006
SchI	GAGTC	2 cut(s)	29, 131
ScrFI	CCNGG	3 cut(s)	356, 740, 775
SduI	GDGCHC	2 cut(s)	732, 1384
SfaNI	GCATC	1 cut(s)	1060
SmiMI	CAYNNNNRTG	1 cut(s)	1089
SmlI	CTYRAG	2 cut(s)	602, 953
SmoI	CTYRAG	2 cut(s)	602, 953
Sse9I	AATT	9 cut(s)	184, 200, 232, 249, 437, 895, 1001, 1431, 1439
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	9 cut(s)	27, 56, 82, 365, 424, 450, 453, 509, 947
SspMI	CTAG	1 cut(s)	1364
SstI	GAGCTC	1 cut(s)	1384
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	3 cut(s)	354, 738, 773
TaaI	ACNGT	2 cut(s)	398, 1180
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	345, 646, 708
TasI	AATT	9 cut(s)	184, 200, 232, 249, 437, 895, 1001, 1431, 1439
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	3 cut(s)	30, 452, 455
TfiI	GAWTC	5 cut(s)	131, 155, 578, 1452, 1531
Tru1I	TTAA	7 cut(s)	231, 327, 615, 927, 954, 978, 1547
Tru9I	TTAA	7 cut(s)	231, 327, 615, 927, 954, 978, 1547
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	178, 1247
TseI	GCWGC	5 cut(s)	30, 58, 455, 506, 1205
Tsp45I	GTSAC	2 cut(s)	178, 1247
TspDTI	ATGAA	7 cut(s)	87, 600, 1046, 1320, 1326, 1416, 1533
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	953
XapI	RAATTY	3 cut(s)	437, 895, 1001
XmiI	GTMKAC	2 cut(s)	405, 971
XspI	CTAG	1 cut(s)	1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.