RchiOBHm_Chr3g0447651

protein KRI1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
268506 .. 272328
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41511

Sequence Viewer

Length: 2112 bp
ATGGGTGGTATGCAGCTCTTCGGTGGCGGCAGCGACTCAGAGACCGAAGACAAGAATGCTCCGAATCTCAAAATCAATGAAGAATACGCTCGCCGCTATGAGCACAACAAGAATCGGGAGGACCTCCACCGTTACGAGGATCTCAAGAAGCGAGGCCTCGTCGACGACGACCACTCCGATTCTGATTCGTCCTCCGAGGATGACGACGACGTCGTTTTGGCAGCCAATTCCAAGAAGAAAGACTTGGAATTCTTCGATGCTATAATCAAGGTAAAGAATCGAGACCCTATCTTGAAAAACAAAGAGGTTGAGCTATTTAAATCTGATGAAACTGAGGTTGAAGATGCTGGTAATGAAACTGAAGACACTAGCCTAGTGAAAGAGGAGGATAGCAAAACTAAGAAGAAGAAAAAGAATAGCAATGAGACTGAAGAGGAGGAGGAGGGTAGCAAAACTAAGAAGAAGAAGAAAAAGGTCTACTTGAAAGATGTAGTGGCTAATCATTTATTAGAAGACGGTGCCGAACTTCCGGAGGATGATGGTAAGCAGTTCCTCAAGAGTTACAGTGAAGAGCAAGAGCAGATAAGGAGGGAATTTTTGGAAGCAGCTGCCAAGGAGGAGGAGGAGGATGAGGGGGAGATATTGAGAGTCAAAGGCAGTAATAGTGCTGTGGGGGATGAAGCTGATGAGGAGTTTGATAAGAAATTGGATGAGTATTTCGGTCAAGACTTGGATGACAATGCTAGGTTTCTCAGGGACTTCTTTAAGAATAAGATGTGGTTGGACAAGGGGAATCAGGGAAGAGGTGCTACTGAGGTTAGGGATGAGGATTTGGAGATGGTGTCTGAGGACGAGATGGAGATTGAGAGGCAGGAGGAGTACGAGTATAGGTTCCAGGAGAATGCAGGGGATCAGGTTTTGGGCCATGCCAGGGAGGTCGAGGGGTCGGTGAGGAAGAAGGTCAAGGCAAGGAAGGAGCAGAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAATGATGACAGGGTCAAGAAGATAATGAAGATTGCAGGGATCAAAGAGGGCGAGGAGTCCTTGTTTGATTCCAAGGAGTTGGAGAACGAATTTGACCCCCAGGAGTATGATAGGATGATGAAGAAAGCTTTTGATGATGAGTATTATGGAAATGATGACTCAGACTTTTGTAGCGATATGGATGAGGATGGTGGTGAGATTGAGAAACCGGATTTTGATAAGGAGGACGAGTTACTTGGACTTCCCAAAGGTTGGGATGGTGCTGGGTCTAGTGATGGTTTCTTAGCTGTGAGGGAGAAGATTTTAAAGCTAAAAGAGGAGACTGGTGGTGATAATGATGAAGAGGAAGAAGACCAGGAGGAAGAGAAAGAAGAAGATGGTGATGAAGATGAAGATGAAGAAGGAGAAGGAGAAGGAGAAGAAGAGAAAGAAGAGGATGGTGATGAAGATGAAGAAGGAGAAGGAGAAGGAGAAGAAGAGAAACTGAGTGAGGAAGGTAAACAAGATAAAAAGCGTAAATTAGCTATTTTGGAGAGAGCTAAAAAGGAGATGTTGGATGAATACTATAAATTAGACTATGAGGATACAATTGGAGACTTGAAGACTAGATTTAGGTATGCTAAAATAAAGCCTAATAGATTTGGGTTGACTACTGCTGAGGTATTAGTGATGGATGAAAAGGAGTTAAATCAATATGTATCTTTGAAAAAGCTTGCTCCATATGCGGAGAAGGAGTGGAAGGTACCCAATAGTAAGAGAAATGAGATAAAGAAGAGGGCCAGAGAAATTTTCAGACATGGAAAAATGGATCACAAAAAAAGTGCTAAGAAGTTGAAAATTAAGGATGATGTGAAGGATTCAATTTCATCAACACCAGCTGAGGAACGTGGGAAGAAACAAGTACAGGACTCAAATGGTGATACAAGCAAATTATCCAGGACCGCTAGAAGAAGGCTGAGCAAAAAGGTTGCAGCATTACCCCTTTCCAGGCTCATTGCATATGGAATGATGCCTTCAAAATCTAAGAACAAAGGAAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

703

Amino Acids

81.47

Weight (kDa)

4.75

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kri1 PF05178 333 - 434 3.5e-19 KRI1-like family
Kri1_C PF12936 537 - 619 9.1e-30 KRI1-like family C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AatII GACGTC 1 cut(s) 213
Acc65I GGTACC 1 cut(s) 1810
AccB1I GGYRCC 2 cut(s) 518, 1810
AccB7I CCANNNNNTGG 1 cut(s) 1320
AccI GTMKAC 2 cut(s) 162, 477
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 4 cut(s) 27, 94, 1793, 2010
AclWI GGATC 4 cut(s) 147, 918, 1115, 1884
AcsI RAATTY 5 cut(s) 248, 593, 1051, 1157, 1854
AcuI CTGAAG 2 cut(s) 381, 450
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 881, 1812, 1971
AfiI CCNNNNNNNGG 4 cut(s) 136, 931, 1320, 2055
AjnI CCWGG 6 cut(s) 894, 929, 1167, 1422, 2003, 2054
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 5 cut(s) 35, 276, 419, 1382, 1656
AlwI GGATC 4 cut(s) 147, 918, 1115, 1884
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 3 cut(s) 154, 922, 1845
ApeKI GCWGC 6 cut(s) 13, 30, 221, 605, 608, 2039
ApoI RAATTY 5 cut(s) 248, 593, 1051, 1157, 1854
Asp718I GGTACC 1 cut(s) 1810
AspS9I GGNCC 4 cut(s) 121, 922, 1845, 2007
AsuHPI GGTGA 6 cut(s) 961, 1274, 1409, 1460, 1520, 1997
AvaII GGWCC 2 cut(s) 121, 2007
BanI GGYRCC 2 cut(s) 518, 1810
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BbsI GAAGAC 5 cut(s) 54, 369, 519, 1425, 1676
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 2 cut(s) 1725, 1947
BbvI GCAGC 6 cut(s) 25, 42, 233, 595, 617, 2051
BciT130I CCWGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
BciVI GTATCC 1 cut(s) 1645
BcoDI GTCTC 5 cut(s) 35, 276, 419, 1382, 1656
BfaI CTAG 6 cut(s) 369, 374, 744, 1338, 1674, 2013
BfuI GTATCC 1 cut(s) 1645
BisI GCNGC 8 cut(s) 14, 28, 31, 94, 222, 606, 609, 2040
BlpI GCTNAGC 1 cut(s) 2024
BlsI GCNGC 8 cut(s) 15, 29, 32, 95, 223, 607, 610, 2041
Bme1390I CCNGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
Bme18I GGWCC 2 cut(s) 121, 2007
BmgT120I GGNCC 4 cut(s) 121, 922, 1845, 2007
BmiI GGNNCC 3 cut(s) 520, 893, 1812
BmrFI CCNGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
BmsI GCATC 3 cut(s) 247, 334, 2067
BpiI GAAGAC 5 cut(s) 54, 369, 519, 1425, 1676
Bpu10I CCTNAGC 2 cut(s) 1725, 1947
Bpu1102I GCTNAGC 1 cut(s) 2024
BpuEI CTTGAG 2 cut(s) 128, 539
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 2 cut(s) 35, 276
BsaJI CCNNGG 5 cut(s) 195, 612, 930, 1140, 1167
BsaWI WCCGGW 2 cut(s) 529, 1276
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 931, 1320, 2055
Bse1I ACTGG 1 cut(s) 1396
Bse3DI GCAATG 2 cut(s) 427, 2061
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
BseDI CCNNGG 5 cut(s) 195, 612, 930, 1140, 1167
BseLI CCNNNNNNNGG 4 cut(s) 136, 931, 1320, 2055
BseMI GCAATG 2 cut(s) 427, 2061
BseNI ACTGG 1 cut(s) 1396
BseXI GCAGC 6 cut(s) 25, 42, 233, 595, 617, 2051
BseYI CCCAGC 1 cut(s) 1331
BshFI GGCC 3 cut(s) 156, 924, 1847
BshNI GGYRCC 2 cut(s) 518, 1810
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 530, 1277
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 4 cut(s) 136, 931, 1320, 2055
BsmAI GTCTC 5 cut(s) 35, 276, 419, 1382, 1656
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 2 cut(s) 61, 907
BsnI GGCC 3 cut(s) 156, 924, 1847
Bso31I GGTCTC 2 cut(s) 35, 276
Bsp1286I GDGCHC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 529
Bsp143I GATC 4 cut(s) 139, 910, 1107, 1876
Bsp1720I GCTNAGC 1 cut(s) 2024
BspACI CCGC 4 cut(s) 27, 94, 1793, 2010
BspANI GGCC 3 cut(s) 156, 924, 1847
BspEI TCCGGA 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 520, 893, 1812
BspPI GGATC 4 cut(s) 147, 918, 1115, 1884
BspQI GCTCTTC 3 cut(s) 23, 564, 980
BspT107I GGYRCC 2 cut(s) 518, 1810
BspTNI GGTCTC 2 cut(s) 35, 276
BsrDI GCAATG 2 cut(s) 427, 2061
BsrI ACTGG 1 cut(s) 1396
BssECI CCNNGG 5 cut(s) 195, 612, 930, 1140, 1167
BssMI GATC 4 cut(s) 139, 910, 1107, 1876
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 612, 1140
Bst2UI CCWGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
Bst4CI ACNGT 3 cut(s) 131, 518, 566
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 91, 1782
BstKTI GATC 4 cut(s) 142, 913, 1110, 1879
BstMAI GTCTC 5 cut(s) 35, 276, 419, 1382, 1656
BstMBI GATC 4 cut(s) 139, 910, 1107, 1876
BstMWI GCNNNNNNNGC 1 cut(s) 1790
BstNI CCWGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
BstSCI CCNGG 6 cut(s) 894, 929, 1167, 1422, 2003, 2054
BstV1I GCAGC 6 cut(s) 25, 42, 233, 595, 617, 2051
BstV2I GAAGAC 5 cut(s) 54, 369, 519, 1425, 1676
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 1147
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 1645
BsuRI GGCC 3 cut(s) 156, 924, 1847
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 91, 1782
Cfr13I GGNCC 4 cut(s) 121, 922, 1845, 2007
Csp6I GTAC 3 cut(s) 880, 1811, 1970
CviAII CATG 2 cut(s) 926, 1865
CviQI GTAC 3 cut(s) 880, 1811, 1970
DpnI GATC 4 cut(s) 141, 912, 1109, 1878
DpnII GATC 4 cut(s) 139, 910, 1107, 1876
DraI TTTAAA 2 cut(s) 319, 1374
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 612, 1140
Eco147I AGGCCT 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 35, 276
Eco47I GGWCC 2 cut(s) 121, 2007
Eco57I CTGAAG 2 cut(s) 381, 450
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 6 cut(s) 894, 929, 1167, 1422, 2003, 2054
EcoT14I CCWWGG 2 cut(s) 612, 1140
ErhI CCWWGG 2 cut(s) 612, 1140
FaeI CATG 2 cut(s) 929, 1868
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 464, 496
FaqI GGGAC 1 cut(s) 770
FatI CATG 2 cut(s) 925, 1864
FauNDI CATATG 2 cut(s) 1789, 2068
FblI GTMKAC 2 cut(s) 162, 477
Fnu4HI GCNGC 8 cut(s) 14, 28, 31, 94, 222, 606, 609, 2040
Fsp4HI GCNGC 8 cut(s) 14, 28, 31, 94, 222, 606, 609, 2040
FspBI CTAG 6 cut(s) 369, 374, 744, 1338, 1674, 2013
GluI GCNGC 8 cut(s) 14, 28, 31, 94, 222, 606, 609, 2040
GsaI CCCAGC 1 cut(s) 1335
HaeIII GGCC 3 cut(s) 156, 924, 1847
HapII CCGG 2 cut(s) 530, 1277
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 929, 1868
HincII GTYRAC 2 cut(s) 163, 1716
HindII GTYRAC 2 cut(s) 163, 1716
HindIII AAGCTT 2 cut(s) 1194, 1778
HpaII CCGG 2 cut(s) 530, 1277
HphI GGTGA 6 cut(s) 961, 1274, 1409, 1460, 1520, 1997
Hpy166II GTNNAC 4 cut(s) 163, 478, 1568, 1716
Hpy188I TCNGA 9 cut(s) 40, 63, 178, 184, 196, 325, 847, 1231, 1862
Hpy188III TCNNGA 8 cut(s) 116, 145, 281, 292, 530, 556, 725, 1084
Hpy8I GTNNAC 4 cut(s) 163, 478, 1568, 1716
Hpy99I CGWCG 6 cut(s) 164, 167, 170, 209, 212, 215
HpyCH4III ACNGT 3 cut(s) 131, 518, 566
HpyCH4IV ACGT 2 cut(s) 210, 1954
HpyCH4V TGCA 6 cut(s) 13, 905, 1013, 1103, 2039, 2066
HpyF10VI GCNNNNNNNGC 1 cut(s) 1790
HpySE526I ACGT 2 cut(s) 210, 1954
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 929, 1868
Kpn2I TCCGGA 1 cut(s) 529
KpnI GGTACC 1 cut(s) 1814
Kzo9I GATC 4 cut(s) 139, 910, 1107, 1876
LguI GCTCTTC 3 cut(s) 23, 564, 980
LmnI GCTCC 3 cut(s) 64, 976, 1789
Lsp1109I GCAGC 6 cut(s) 25, 42, 233, 595, 617, 2051
LweI GCATC 3 cut(s) 247, 334, 2067
MaeI CTAG 6 cut(s) 369, 374, 744, 1338, 1674, 2013
MaeII ACGT 2 cut(s) 210, 1954
MaeIII GTNAC 3 cut(s) 131, 560, 1299
MalI GATC 4 cut(s) 141, 912, 1109, 1878
MboI GATC 4 cut(s) 139, 910, 1107, 1876
MfeI CAATTG 1 cut(s) 1656
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 105
MlyI GAGTC 5 cut(s) 29, 657, 1133, 1220, 1970
MmeI TCCRAC 4 cut(s) 762, 999, 1128, 1602
MroI TCCGGA 1 cut(s) 529
MseI TTAA 5 cut(s) 318, 765, 1373, 1754, 1908
MspA1I CMGCKG 2 cut(s) 608, 1946
MspI CCGG 2 cut(s) 530, 1277
MspR9I CCNGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
MunI CAATTG 1 cut(s) 1656
Mva1269I GAATGC 2 cut(s) 61, 907
MvaI CCWGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
MwoI GCNNNNNNNGC 1 cut(s) 1790
NdeI CATATG 2 cut(s) 1789, 2068
NdeII GATC 4 cut(s) 139, 910, 1107, 1876
NlaIII CATG 2 cut(s) 929, 1868
NlaIV GGNNCC 3 cut(s) 520, 893, 1812
PceI AGGCCT 1 cut(s) 156
PciSI GCTCTTC 3 cut(s) 23, 564, 980
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 174, 210
PctI GAATGC 2 cut(s) 61, 907
PfeI GAWTC 8 cut(s) 64, 112, 179, 185, 277, 793, 1136, 1925
PflFI GACNNNGTC 2 cut(s) 209, 1079
PflMI CCANNNNNTGG 1 cut(s) 1320
PfoI TCCNGGA 2 cut(s) 894, 2003
PkrI GCNGC 8 cut(s) 15, 29, 32, 95, 223, 607, 610, 2041
PleI GAGTC 5 cut(s) 29, 656, 1132, 1220, 1970
PpsI GAGTC 5 cut(s) 29, 656, 1132, 1220, 1970
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 6 cut(s) 894, 929, 1167, 1422, 2003, 2054
PspFI CCCAGC 1 cut(s) 1331
PspGI CCWGG 6 cut(s) 894, 929, 1167, 1422, 2003, 2054
PspN4I GGNNCC 3 cut(s) 520, 893, 1812
PspPI GGNCC 4 cut(s) 121, 922, 1845, 2007
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 2 cut(s) 209, 1079
PvuII CAGCTG 2 cut(s) 608, 1946
RsaI GTAC 3 cut(s) 881, 1812, 1971
RsaNI GTAC 3 cut(s) 880, 1811, 1970
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 3 cut(s) 23, 564, 980
SaqAI TTAA 5 cut(s) 318, 765, 1373, 1754, 1908
SatI GCNGC 8 cut(s) 14, 28, 31, 94, 222, 606, 609, 2040
Sau3AI GATC 4 cut(s) 139, 910, 1107, 1876
Sau96I GGNCC 4 cut(s) 121, 922, 1845, 2007
SchI GAGTC 5 cut(s) 29, 657, 1133, 1220, 1970
ScrFI CCNGG 6 cut(s) 896, 931, 1169, 1424, 2005, 2056
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 3 cut(s) 247, 334, 2067
SgrDI CGTCGACG 1 cut(s) 161
SinI GGWCC 2 cut(s) 121, 2007
SmiI ATTTAAAT 1 cut(s) 319
SmlI CTYRAG 2 cut(s) 143, 554
SmoI CTYRAG 2 cut(s) 143, 554
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 4 cut(s) 27, 94, 1793, 2010
SspMI CTAG 6 cut(s) 369, 374, 744, 1338, 1674, 2013
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 6 cut(s) 894, 929, 1167, 1422, 2003, 2054
StyI CCWWGG 2 cut(s) 612, 1140
SwaI ATTTAAAT 1 cut(s) 319
TaaI ACNGT 3 cut(s) 131, 518, 566
TaiI ACGT 2 cut(s) 213, 1957
TaqI TCGA 4 cut(s) 162, 255, 280, 939
TaqII GACCGA 2 cut(s) 59, 710
TatI WGTACW 1 cut(s) 1969
TauI GCSGC 2 cut(s) 30, 96
TfiI GAWTC 8 cut(s) 64, 112, 179, 185, 277, 793, 1136, 1925
Tru1I TTAA 5 cut(s) 318, 765, 1373, 1754, 1908
Tru9I TTAA 5 cut(s) 318, 765, 1373, 1754, 1908
TscAI CASTG 1 cut(s) 571
TseI GCWGC 6 cut(s) 13, 30, 221, 605, 608, 2039
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 2 cut(s) 209, 1079
Van91I CCANNNNNTGG 1 cut(s) 1320
VpaK11BI GGWCC 2 cut(s) 121, 2007
XapI RAATTY 5 cut(s) 248, 593, 1051, 1157, 1854
XmiI GTMKAC 2 cut(s) 162, 477
XspI CTAG 6 cut(s) 369, 374, 744, 1338, 1674, 2013
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.