Rw3G000300

protein KRI1 homolog

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
307102 .. 310802
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000300.1

Sequence Viewer

Length: 2106 bp
ATGGGTGGTATGCAGCTCTTAGATGGCGGCAGCGACTCAGAGACCGAAGACAAGAATCACAACAAGAATCGGGAGGACCTCCACCGTTACGAGGATCTCAAGAAGCGAGGCCTCGTCGACGACGACCACTCCGATTCTGATTCGTCCTCCGAGGATGACGACGACGTCGTTTTGGCAGCCAATTCCAAGAAGAAAGACTTGGAATTCTTCGATGCTATAATCAAGGTAAAGAATCGAGACCCTATCTTGAAAAACAAAGAGGTTGAGTTATTTAAATCTGATGAAACTGAGGTTGAAGATGCTGGTAATGAAACTGAAGACACTAGTCTAGTGAAAGAGGAGGATAGCAAAACTAAGAAGAAGAAAAAGAATAGCAATGAGACTGAAGAGGAGGATAGCAAAACTAAGAAGAAGAAAAAGAATAGCAATGAGACTGAAGAGGAGGGTAGCAAAACTAAGAAGAAGAAGAAGAAGAAAAAGGTCTACTTGAAAGATGTAGTGGCTAATCATTTATTAGAAGACGGTGCCGAACTTCCGGAGGATGATGGTAAGCAGTTCCTCAAGAGTTACAGTGAAGAGCAAGAGCAGATAAGGAGGGAATTTTTGGAAGCAGCTGCCAAGGAGGAGGAGGAGGATGAGGGGGAGATATTGAGAGTCAAAGGCAGTAATAGTGCTGTGGGGGATGAAGCTGATGAGGAGTTCGATAAGAAATTGGATGAGTATTTCGGTCAAGACTTGGATGACAATGCTAGGTTTCTCAGGGACTTCTTTAAGAATAAGATGTGGTTGGACAAGGGGAATCAGGGAAGAGGTGCTACTGAGGTTAGGGATGAGGATTTGGAGAAGGTGTCTGAGGACGAGATGGAGATTGAGAGGCAGGAGGAGTACGAGTATAGGTTCCAGGAGAATGCGGGGGATCAGGTTTTGGGGCATGCCAGGGAGGTCGAGGGGTCAGTGAGGAAGAAGGTCAAGGCAAGGAAGGAGCAGAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAATGATGACAGGGTCAAGAAGATAATGAAGATTGCAGGGATCAAAGAGGGCGAGGAGTCCTTGTTTGATTCCAAGGAGTTGGAGAACGAATTTGACCCCCAGGAGTATGATAGGATGATGAGGAAAGCTTTTGATGATGAGTATTATGGAAATGATGACTCAGACTTTTGTAGCGATGTGGATGAGGATGGTGGTGAGATTGAGAAACCGGATTTTGATAAGGAGGACGAGTTACTTGGACTTCCCAAAGGTTGGGATGGTGCTGGGTCTAGTGATGGTTTCTTAGCTGTGAGGGAGAAGATTTTAAAGCTAAAAGAGGAGACTGGTGGTGATAGTGATGAAGAGGAAGAAGACCAGGAGGAAGAGAAAGAAGAAGATGGTGATGAAGATGAAGATGAAGAAGGAGAAGGAGAAGAAGAGAAAGAAGAGGATGGTGATGAAGATGAAGAAGGAGAAGGAGAAGAAGAGAAACTGAGTGAGGAAGGTAAACAAGATAAAAAACGTAAATTAGCTATTTTGGAGAGAGCTAAAAAGGAGATGTTGGATGAATACTATAAATTAGACTATGAGGATACAATTGGAGACTTGAAGACTAGATTTAGGTATGCTAAAATAAAGCCTAATAGATTTGGGTTGACTACTGCTGAGGTATTAGTGATGGATGAAAAGGAGTTAAATCAATATGTATCTTTGAAAAAGCTTGCTCCATATGCGGAGAAGGAGTGGAAGGTACCCAATAGTAAGAGAAATGAGATCAAGAAGAGGGCCAGAGAGATTTTCAGACATGGAAAAATGGATCACAAAAAAAGTGCTAAGAAGTTGAAAATTAAGGATGATGTGAAGGATTCAATTTCATCAACACCAGCTGAGGAACGTGGGAAGAAACAAGTACAGGACTCAAATGGTGATACGAGCAAATTATCCAGGACCGCTAGAAGAAGGCTGAACAAAAAGGTTGCAGCATTACCCCTTTCCAGGCTCATTGCATATGGAATGATGCCTTCAAAATCTAAGAACAAAGGAAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

701

Amino Acids

81.27

Weight (kDa)

4.82

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kri1 PF05178 335 - 436 2.3e-19 KRI1-like family
Kri1_C PF12936 535 - 617 9.1e-30 KRI1-like family C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 168
Acc65I GGTACC 1 cut(s) 1804
AccB1I GGYRCC 2 cut(s) 524, 1804
AccB7I CCANNNNNTGG 1 cut(s) 1326
AccI GTMKAC 2 cut(s) 117, 483
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 4 cut(s) 27, 911, 1787, 2004
AclWI GGATC 4 cut(s) 102, 924, 1121, 1878
AcsI RAATTY 4 cut(s) 203, 599, 1057, 1163
AcuI CTGAAG 3 cut(s) 336, 405, 456
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 887, 1806, 1965
AfiI CCNNNNNNNGG 3 cut(s) 91, 1326, 2049
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 6 cut(s) 900, 935, 1173, 1428, 1997, 2048
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
Alw26I GTCTC 6 cut(s) 35, 231, 374, 425, 1388, 1650
AlwI GGATC 4 cut(s) 102, 924, 1121, 1878
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 2 cut(s) 109, 1839
ApeKI GCWGC 6 cut(s) 13, 30, 176, 611, 614, 2033
ApoI RAATTY 4 cut(s) 203, 599, 1057, 1163
Asp718I GGTACC 1 cut(s) 1804
AspS9I GGNCC 3 cut(s) 76, 1839, 2001
AsuHPI GGTGA 5 cut(s) 1280, 1415, 1466, 1520, 1991
AvaII GGWCC 2 cut(s) 76, 2001
BanI GGYRCC 2 cut(s) 524, 1804
BarI GAAGNNNNNNTAC 2 cut(s) 799, 831
BbsI GAAGAC 5 cut(s) 54, 324, 525, 1431, 1670
BbvCI CCTCAGC 2 cut(s) 1719, 1941
BbvI GCAGC 6 cut(s) 25, 42, 188, 601, 623, 2045
BciT130I CCWGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
BciVI GTATCC 1 cut(s) 1639
BcoDI GTCTC 6 cut(s) 35, 231, 374, 425, 1388, 1650
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 6 cut(s) 324, 329, 750, 1344, 1668, 2007
BfuI GTATCC 1 cut(s) 1639
BisI GCNGC 7 cut(s) 14, 28, 31, 177, 612, 615, 2034
BlsI GCNGC 7 cut(s) 15, 29, 32, 178, 613, 616, 2035
Bme1390I CCNGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
Bme18I GGWCC 2 cut(s) 76, 2001
BmgT120I GGNCC 3 cut(s) 76, 1839, 2001
BmiI GGNNCC 3 cut(s) 526, 899, 1806
BmrFI CCNGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
BmsI GCATC 3 cut(s) 202, 289, 2061
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 5 cut(s) 54, 324, 525, 1431, 1670
Bpu10I CCTNAGC 2 cut(s) 1719, 1941
BpuEI CTTGAG 2 cut(s) 83, 545
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 2 cut(s) 35, 231
BsaJI CCNNGG 5 cut(s) 150, 618, 936, 1146, 1173
BsaWI WCCGGW 2 cut(s) 535, 1282
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 1326, 2049
Bse1I ACTGG 1 cut(s) 1402
Bse3DI GCAATG 3 cut(s) 382, 433, 2055
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
BseDI CCNNGG 5 cut(s) 150, 618, 936, 1146, 1173
BseLI CCNNNNNNNGG 3 cut(s) 91, 1326, 2049
BseMI GCAATG 3 cut(s) 382, 433, 2055
BseMII CTCAG 9 cut(s) 51, 279, 772, 810, 843, 1248, 1538, 1710, 1932
BseNI ACTGG 1 cut(s) 1402
BseXI GCAGC 6 cut(s) 25, 42, 188, 601, 623, 2045
BseYI CCCAGC 1 cut(s) 1337
BshFI GGCC 2 cut(s) 111, 1841
BshNI GGYRCC 2 cut(s) 524, 1804
BsiSI CCGG 2 cut(s) 536, 1283
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 3 cut(s) 91, 1326, 2049
BsmAI GTCTC 6 cut(s) 35, 231, 374, 425, 1388, 1650
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 2 cut(s) 111, 1841
Bso31I GGTCTC 2 cut(s) 35, 231
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 5 cut(s) 94, 916, 1113, 1827, 1870
BspACI CCGC 4 cut(s) 27, 911, 1787, 2004
BspANI GGCC 2 cut(s) 111, 1841
BspCNI CTCAG 9 cut(s) 50, 280, 771, 811, 844, 1247, 1539, 1711, 1933
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 526, 899, 1806
BspPI GGATC 4 cut(s) 102, 924, 1121, 1878
BspQI GCTCTTC 2 cut(s) 570, 986
BspT107I GGYRCC 2 cut(s) 524, 1804
BspTNI GGTCTC 2 cut(s) 35, 231
BsrDI GCAATG 3 cut(s) 382, 433, 2055
BsrI ACTGG 1 cut(s) 1402
BssECI CCNNGG 5 cut(s) 150, 618, 936, 1146, 1173
BssMI GATC 5 cut(s) 94, 916, 1113, 1827, 1870
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 618, 1146
Bst2UI CCWGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
Bst4CI ACNGT 3 cut(s) 86, 524, 572
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 933, 1776
BstKTI GATC 5 cut(s) 97, 919, 1116, 1830, 1873
BstMAI GTCTC 6 cut(s) 35, 231, 374, 425, 1388, 1650
BstMBI GATC 5 cut(s) 94, 916, 1113, 1827, 1870
BstMWI GCNNNNNNNGC 1 cut(s) 1784
BstNI CCWGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
BstNSI RCATGY 1 cut(s) 935
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 6 cut(s) 900, 935, 1173, 1428, 1997, 2048
BstV1I GCAGC 6 cut(s) 25, 42, 188, 601, 623, 2045
BstV2I GAAGAC 5 cut(s) 54, 324, 525, 1431, 1670
BstX2I RGATCY 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 1153
BstYI RGATCY 1 cut(s) 94
BsuI GTATCC 1 cut(s) 1639
BsuRI GGCC 2 cut(s) 111, 1841
BtgZI GCGATG 1 cut(s) 1263
BtsIMutI CAGTG 2 cut(s) 577, 960
Cac8I GCNNGC 2 cut(s) 933, 1776
Cfr13I GGNCC 3 cut(s) 76, 1839, 2001
Csp6I GTAC 3 cut(s) 886, 1805, 1964
CviAII CATG 2 cut(s) 932, 1859
CviQI GTAC 3 cut(s) 886, 1805, 1964
DpnI GATC 5 cut(s) 96, 918, 1115, 1829, 1872
DpnII GATC 5 cut(s) 94, 916, 1113, 1827, 1870
DraI TTTAAA 2 cut(s) 274, 1380
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 618, 1146
Eco147I AGGCCT 1 cut(s) 111
Eco31I GGTCTC 2 cut(s) 35, 231
Eco47I GGWCC 2 cut(s) 76, 2001
Eco57I CTGAAG 3 cut(s) 336, 405, 456
EcoO109I RGGNCCY 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 6 cut(s) 900, 935, 1173, 1428, 1997, 2048
EcoT14I CCWWGG 2 cut(s) 618, 1146
ErhI CCWWGG 2 cut(s) 618, 1146
FaeI CATG 2 cut(s) 935, 1862
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 470, 502
FaqI GGGAC 1 cut(s) 776
FatI CATG 2 cut(s) 931, 1858
FauI CCCGC 1 cut(s) 904
FauNDI CATATG 2 cut(s) 1783, 2062
FblI GTMKAC 2 cut(s) 117, 483
Fnu4HI GCNGC 7 cut(s) 14, 28, 31, 177, 612, 615, 2034
Fsp4HI GCNGC 7 cut(s) 14, 28, 31, 177, 612, 615, 2034
FspBI CTAG 6 cut(s) 324, 329, 750, 1344, 1668, 2007
GluI GCNGC 7 cut(s) 14, 28, 31, 177, 612, 615, 2034
GsaI CCCAGC 1 cut(s) 1341
HaeIII GGCC 2 cut(s) 111, 1841
HapII CCGG 2 cut(s) 536, 1283
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 935, 1862
HincII GTYRAC 2 cut(s) 118, 1710
HindII GTYRAC 2 cut(s) 118, 1710
HindIII AAGCTT 2 cut(s) 1200, 1772
HpaII CCGG 2 cut(s) 536, 1283
HphI GGTGA 5 cut(s) 1280, 1415, 1466, 1520, 1991
Hpy166II GTNNAC 4 cut(s) 118, 484, 1562, 1710
Hpy188I TCNGA 8 cut(s) 40, 133, 139, 151, 280, 853, 1237, 1856
Hpy188III TCNNGA 9 cut(s) 71, 100, 236, 247, 536, 562, 731, 1090, 1831
Hpy8I GTNNAC 4 cut(s) 118, 484, 1562, 1710
Hpy99I CGWCG 6 cut(s) 119, 122, 125, 164, 167, 170
HpyCH4III ACNGT 3 cut(s) 86, 524, 572
HpyCH4IV ACGT 3 cut(s) 165, 1576, 1948
HpyCH4V TGCA 5 cut(s) 13, 1019, 1109, 2033, 2060
HpyF10VI GCNNNNNNNGC 1 cut(s) 1784
HpySE526I ACGT 3 cut(s) 165, 1576, 1948
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 935, 1862
Kpn2I TCCGGA 1 cut(s) 535
KpnI GGTACC 1 cut(s) 1808
Kzo9I GATC 5 cut(s) 94, 916, 1113, 1827, 1870
LguI GCTCTTC 2 cut(s) 570, 986
LmnI GCTCC 2 cut(s) 982, 1783
Lsp1109I GCAGC 6 cut(s) 25, 42, 188, 601, 623, 2045
LweI GCATC 3 cut(s) 202, 289, 2061
MaeI CTAG 6 cut(s) 324, 329, 750, 1344, 1668, 2007
MaeII ACGT 3 cut(s) 165, 1576, 1948
MaeIII GTNAC 3 cut(s) 86, 566, 1305
MalI GATC 5 cut(s) 96, 918, 1115, 1829, 1872
MboI GATC 5 cut(s) 94, 916, 1113, 1827, 1870
MfeI CAATTG 1 cut(s) 1650
MflI RGATCY 1 cut(s) 94
MlyI GAGTC 5 cut(s) 29, 663, 1139, 1226, 1964
MmeI TCCRAC 4 cut(s) 768, 1005, 1134, 1596
MroI TCCGGA 1 cut(s) 535
MseI TTAA 5 cut(s) 273, 771, 1379, 1748, 1902
MspA1I CMGCKG 2 cut(s) 614, 1940
MspI CCGG 2 cut(s) 536, 1283
MspR9I CCNGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
MunI CAATTG 1 cut(s) 1650
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
MwoI GCNNNNNNNGC 1 cut(s) 1784
NdeI CATATG 2 cut(s) 1783, 2062
NdeII GATC 5 cut(s) 94, 916, 1113, 1827, 1870
NlaIII CATG 2 cut(s) 935, 1862
NlaIV GGNNCC 3 cut(s) 526, 899, 1806
NspI RCATGY 1 cut(s) 935
PaeI GCATGC 1 cut(s) 935
PceI AGGCCT 1 cut(s) 111
PciSI GCTCTTC 2 cut(s) 570, 986
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 129, 165
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 8 cut(s) 55, 67, 134, 140, 232, 799, 1142, 1919
PflFI GACNNNGTC 2 cut(s) 164, 1085
PflMI CCANNNNNTGG 1 cut(s) 1326
PfoI TCCNGGA 2 cut(s) 900, 1997
PkrI GCNGC 7 cut(s) 15, 29, 32, 178, 613, 616, 2035
PleI GAGTC 5 cut(s) 29, 662, 1138, 1226, 1964
PpsI GAGTC 5 cut(s) 29, 662, 1138, 1226, 1964
PpuMI RGGWCCY 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 6 cut(s) 900, 935, 1173, 1428, 1997, 2048
PspFI CCCAGC 1 cut(s) 1337
PspGI CCWGG 6 cut(s) 900, 935, 1173, 1428, 1997, 2048
PspN4I GGNNCC 3 cut(s) 526, 899, 1806
PspPI GGNCC 3 cut(s) 76, 1839, 2001
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 1 cut(s) 94
PsyI GACNNNGTC 2 cut(s) 164, 1085
PvuII CAGCTG 2 cut(s) 614, 1940
RsaI GTAC 3 cut(s) 887, 1806, 1965
RsaNI GTAC 3 cut(s) 886, 1805, 1964
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 2 cut(s) 570, 986
SaqAI TTAA 5 cut(s) 273, 771, 1379, 1748, 1902
SatI GCNGC 7 cut(s) 14, 28, 31, 177, 612, 615, 2034
Sau3AI GATC 5 cut(s) 94, 916, 1113, 1827, 1870
Sau96I GGNCC 3 cut(s) 76, 1839, 2001
SchI GAGTC 5 cut(s) 29, 663, 1139, 1226, 1964
ScrFI CCNGG 6 cut(s) 902, 937, 1175, 1430, 1999, 2050
SfaNI GCATC 3 cut(s) 202, 289, 2061
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 2 cut(s) 76, 2001
SmiI ATTTAAAT 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 98, 560
SmoI CTYRAG 2 cut(s) 98, 560
SpeI ACTAGT 1 cut(s) 323
SphI GCATGC 1 cut(s) 935
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 4 cut(s) 27, 911, 1787, 2004
SspMI CTAG 6 cut(s) 324, 329, 750, 1344, 1668, 2007
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 6 cut(s) 900, 935, 1173, 1428, 1997, 2048
StyI CCWWGG 2 cut(s) 618, 1146
SwaI ATTTAAAT 1 cut(s) 274
TaaI ACNGT 3 cut(s) 86, 524, 572
TaiI ACGT 3 cut(s) 168, 1579, 1951
TaqI TCGA 5 cut(s) 117, 210, 235, 702, 945
TaqII GACCGA 2 cut(s) 59, 716
TatI WGTACW 1 cut(s) 1963
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 8 cut(s) 55, 67, 134, 140, 232, 799, 1142, 1919
Tru1I TTAA 5 cut(s) 273, 771, 1379, 1748, 1902
Tru9I TTAA 5 cut(s) 273, 771, 1379, 1748, 1902
TscAI CASTG 2 cut(s) 577, 960
TseI GCWGC 6 cut(s) 13, 30, 176, 611, 614, 2033
TspRI CASTG 2 cut(s) 577, 960
Tth111I GACNNNGTC 2 cut(s) 164, 1085
Van91I CCANNNNNTGG 1 cut(s) 1326
VpaK11BI GGWCC 2 cut(s) 76, 2001
XapI RAATTY 4 cut(s) 203, 599, 1057, 1163
XceI RCATGY 1 cut(s) 935
XmiI GTMKAC 2 cut(s) 117, 483
XspI CTAG 6 cut(s) 324, 329, 750, 1344, 1668, 2007
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.