Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009859

Physical Location & Seq

Genomic Coordinates Forward (+)

22734787 .. 22736355

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGATGCCTTGAGAAGAAATAAAAGTGATTTTCATTTTGCCTCCATTTCGGTCCTAAATAAAAAAAAATATATAAAAGGGGAGTCCTTTTCAAGTTCCAAACTAAAAACCCCCGCCACCGCCTCAGCCCCCAAATTAATTGAAGAAAAAGAAGCAGCAGCGACTCAGATAGAAATTGAGGAAGAAGAAGCAGCAGCAACTCAGATATTCGGCGGAAACAATATGGGCGGGCTTCAACTACTCGACAGCGGAAGCGACTCCGAGAACGAAAACGGAAACGACGACGTTCCGCAGCTCAAAATCAATGAAGATTTCGCTCGCAGGTACGAACACAACAAGAAGCGGGAGGAGCTCCAACGCTACGAGGAACTGAAGAAGCGAGGCCTCGTGGCTGACCCCTCCGAAGATTCAGACTCTGAACCAGATTTTGAATCGGACGACGACTATGTCCATGTGGCGAATTCCAAGAAGAGGGAATTGGAATTTTTGGATGGTCTGCTCAAGGTAAAAAAGCAAGACCCTATCTTGAAAAACAAAGATGTTGTTTTGTTTAATTCTGATGGAACCAAAATTATTGGAAACAATGGAGGAGAGGGAAAGGCAAAGAATAAGAAGAAGATGTACTTGAAAGATGTTAATGCTAAGCATTTGATGGAGGATGGCCCGGAACTGGCGGAGGAGGATGGCAAGAACATTGATAAAAACAGTAAGGTTTACAACGAAGAGCAAGAGCGGATAAGGAGAGAATTCTTACAGGCCGCTGCAGCCGAGGAGGATGATGATGATGGTGAGTTTTTGATAGAGAAGAATAAGAATGCTGCGGGGGATGATGATGATGATGATGATGATACTGTTGATAATGATCAGTATGAGAAGGCATTGGATGAGTGTTTCCCTGAATCGGATGAAAATGCTATGTTTCTCAAGAAGTTCTTTAAGGATCAGCTGTGGAAGGAGGATAAGGATCCCGAGCTAAAGGAGGAGGATTTGGAGATGGTGTCCGAGGACGAGATGGAGATCGAAAGGCAGGAGGAGTATGAGTACAGGTTCCAGGAGAATGCAGGTGATCGGATTATGGGGCATTCCAGGCAAGTTGAGGGGTCGGTGAGGAAGAAGGTCAAGGCGAGGAAGGAGCAGAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAACGACGAGAAGGTTAAGAAGATAATGGAGATTGCGGGGCTTAAGGAGGGCGAGGAGTCTACATTTGATCCAAAGGAGTTGGAGAAGGAATATGATCCCCAAGAATATCGATCGGATGATGAAGAAGGCTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kri1 Kri1_C

Protein Analysis

454

Amino Acids

52.52

Weight (kDa)

4.68

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24080 AT3G24080 AT3G24080 AT3G24080
fragaria_vesca	FvH4_6g00350
malus_domestica	MD04G1246500.v1.1 MD12G1263700.v1.1
prunus_persica	Prupe.6G362700_v2.0.a1
pyrus_communis	pycom04g21710 pycom04g21720 pycom12g24010
rosa_chinensis	RchiOBHm_Chr3g0447651
rosa_multiflora	Rmu_sc0029211.1_g000001 Rmu_ssc0000391.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425860
rosa_rugosa	Rorug02G0604000
rosa_samantha	Rh3AG004000 Rh3BG003600 Rh3CG003900 Rh3DG003900
rosa_wichuraiana	Rw3G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1052
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	2 cut(s)	312, 1052
AccBSI	CCGCTC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	1283
AclWI	GGATC	5 cut(s)	948, 959, 972, 1286, 1313
AcsI	RAATTY	4 cut(s)	460, 482, 746, 1207
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	326, 623, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	471, 670, 901
AflII	CTTAAG	1 cut(s)	1265
AgsI	TTSAA	8 cut(s)	93, 143, 236, 431, 529, 628, 1204, 1213
AjnI	CCWGG	2 cut(s)	1050, 1085
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	4 cut(s)	295, 352, 946, 973
AluI	AGCT	4 cut(s)	295, 352, 946, 973
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	5 cut(s)	948, 959, 972, 1286, 1313
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	968
AoxI	GGCC	3 cut(s)	382, 661, 756
ApeKI	GCWGC	8 cut(s)	155, 158, 191, 194, 292, 761, 764, 818
ApoI	RAATTY	4 cut(s)	460, 482, 746, 1207
AseI	ATTAAT	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	52, 662
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	800, 1076, 1117
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	964
BanII	GRGCYC	1 cut(s)	354
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
BauI	CACGAG	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	124
BbvI	GCAGC	8 cut(s)	167, 170, 203, 206, 304, 748, 776, 805
BccI	CCATC	9 cut(s)	485, 554, 646, 653, 677, 779, 988, 1006, 1153
BciT130I	CCWGG	2 cut(s)	1052, 1087
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	762
BfrI	CTTAAG	1 cut(s)	1265
BfuAI	ACCTGC	2 cut(s)	312, 1052
BisI	GCNGC	9 cut(s)	156, 159, 192, 195, 293, 759, 762, 765, 819
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	9 cut(s)	157, 160, 193, 196, 294, 760, 763, 766, 820
Bme1390I	CCNGG	3 cut(s)	665, 1052, 1087
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	968
BmgT120I	GGNCC	2 cut(s)	52, 662
BmiI	GGNNCC	3 cut(s)	565, 966, 1049
BmrFI	CCNGG	3 cut(s)	665, 1052, 1087
Bpu10I	CCTNAGC	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	3 cut(s)	31, 485, 908
BpuMI	CCSGG	1 cut(s)	665
Bsa29I	ATCGAT	1 cut(s)	1333
BsaBI	GATNNNNATC	3 cut(s)	861, 963, 1016
BsaJI	CCNNGG	2 cut(s)	768, 1002
BsaXI	ACNNNNNCTCC	6 cut(s)	983, 1013, 1025, 1055, 1175, 1205
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 670, 901
Bse1I	ACTGG	1 cut(s)	675
Bse8I	GATNNNNATC	3 cut(s)	861, 963, 1016
BseBI	CCWGG	2 cut(s)	1052, 1087
BseCI	ATCGAT	1 cut(s)	1333
BseDI	CCNNGG	2 cut(s)	768, 1002
BseJI	GATNNNNATC	3 cut(s)	861, 963, 1016
BseLI	CCNNNNNNNGG	3 cut(s)	471, 670, 901
BseMII	CTCAG	3 cut(s)	138, 179, 215
BseNI	ACTGG	1 cut(s)	675
BseXI	GCAGC	8 cut(s)	167, 170, 203, 206, 304, 748, 776, 805
Bsh1285I	CGRYCG	1 cut(s)	1337
BshFI	GGCC	3 cut(s)	384, 663, 758
BshVI	ATCGAT	1 cut(s)	1333
BsiEI	CGRYCG	1 cut(s)	1337
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	3 cut(s)	471, 670, 901
BsmI	GAATGC	3 cut(s)	820, 1063, 1081
BsnI	GGCC	3 cut(s)	384, 663, 758
BsoBI	CYCGRG	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
Bsp1720I	GCTNAGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	384, 663, 758
BspCNI	CTCAG	3 cut(s)	137, 178, 214
BspDI	ATCGAT	1 cut(s)	1333
BspLI	GGNNCC	3 cut(s)	565, 966, 1049
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	2 cut(s)	312, 1052
BspPI	GGATC	5 cut(s)	948, 959, 972, 1286, 1313
BspQI	GCTCTTC	2 cut(s)	717, 1136
BspTI	CTTAAG	1 cut(s)	1265
BsrBI	CCGCTC	1 cut(s)	733
BsrI	ACTGG	1 cut(s)	675
BssECI	CCNNGG	2 cut(s)	768, 1002
BssMI	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	1052, 1087
Bst4CI	ACNGT	2 cut(s)	707, 853
Bst6I	CTCTTC	3 cut(s)	464, 717, 1136
BstAFI	CTTAAG	1 cut(s)	1265
BstC8I	GCNNGC	2 cut(s)	230, 319
BstDEI	CTNAG	4 cut(s)	124, 165, 201, 642
BstKTI	GATC	8 cut(s)	865, 943, 967, 1020, 1069, 1294, 1321, 1337
BstMBI	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
BstMCI	CGRYCG	1 cut(s)	1337
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 764, 1087
BstNI	CCWGG	2 cut(s)	1052, 1087
BstSCI	CCNGG	3 cut(s)	663, 1050, 1085
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	8 cut(s)	167, 170, 203, 206, 304, 748, 776, 805
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
Bsu15I	ATCGAT	1 cut(s)	1333
BsuRI	GGCC	3 cut(s)	384, 663, 758
BsuTUI	ATCGAT	1 cut(s)	1333
BveI	ACCTGC	2 cut(s)	312, 1052
Cac8I	GCNNGC	2 cut(s)	230, 319
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	52, 662
ClaI	ATCGAT	1 cut(s)	1333
Csp6I	GTAC	3 cut(s)	325, 622, 1042
CviAII	CATG	1 cut(s)	452
CviQI	GTAC	3 cut(s)	325, 622, 1042
DdeI	CTNAG	4 cut(s)	124, 165, 201, 642
DpnI	GATC	8 cut(s)	864, 942, 966, 1019, 1068, 1293, 1320, 1336
DpnII	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
Eam1104I	CTCTTC	3 cut(s)	464, 717, 1136
EarI	CTCTTC	3 cut(s)	464, 717, 1136
EciI	GGCGGA	2 cut(s)	228, 689
Ecl136II	GAGCTC	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	352
EcoRI	GAATTC	2 cut(s)	460, 746
EcoRII	CCWGG	2 cut(s)	1050, 1085
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	1 cut(s)	455
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 917, 949
FatI	CATG	1 cut(s)	451
FauI	CCCGC	5 cut(s)	121, 221, 336, 814, 1252
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	1283
Fnu4HI	GCNGC	9 cut(s)	156, 159, 192, 195, 293, 759, 762, 765, 819
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	9 cut(s)	156, 159, 192, 195, 293, 759, 762, 765, 819
GluI	GCNGC	9 cut(s)	156, 159, 192, 195, 293, 759, 762, 765, 819
HaeIII	GGCC	3 cut(s)	384, 663, 758
HapII	CCGG	1 cut(s)	665
Hin1II	CATG	1 cut(s)	455
HinfI	GANTC	8 cut(s)	83, 163, 257, 407, 413, 431, 899, 1280
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	3 cut(s)	800, 1076, 1117
Hpy166II	GTNNAC	2 cut(s)	715, 1284
Hpy188III	TCNNGA	3 cut(s)	526, 925, 968
Hpy8I	GTNNAC	2 cut(s)	715, 1284
Hpy99I	CGWCG	4 cut(s)	284, 287, 443, 1232
HpyAV	CCTTC	8 cut(s)	868, 946, 1108, 1123, 1213, 1228, 1303, 1343
HpyCH4III	ACNGT	2 cut(s)	707, 853
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	764, 1061, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 764, 1087
HpyF3I	CTNAG	4 cut(s)	124, 165, 201, 642
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
LguI	GCTCTTC	2 cut(s)	717, 1136
LmnI	GCTCC	3 cut(s)	349, 357, 1132
Lsp1109I	GCAGC	8 cut(s)	167, 170, 203, 206, 304, 748, 776, 805
MaeII	ACGT	1 cut(s)	285
MalI	GATC	8 cut(s)	864, 942, 966, 1019, 1068, 1293, 1320, 1336
MbiI	CCGCTC	1 cut(s)	733
MboI	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	1 cut(s)	354
MlyI	GAGTC	5 cut(s)	92, 157, 251, 407, 1289
MmeI	TCCRAC	3 cut(s)	379, 1155, 1284
MseI	TTAA	6 cut(s)	137, 552, 636, 936, 1239, 1266
MspA1I	CMGCKG	3 cut(s)	249, 761, 946
MspCI	CTTAAG	1 cut(s)	1265
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	3 cut(s)	665, 1052, 1087
Mva1269I	GAATGC	3 cut(s)	820, 1063, 1081
MvaI	CCWGG	2 cut(s)	1052, 1087
MwoI	GCNNNNNNNGC	3 cut(s)	349, 764, 1087
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	3 cut(s)	565, 966, 1049
NmeAIII	GCCGAG	1 cut(s)	793
PaqCI	CACCTGC	1 cut(s)	1052
PceI	AGGCCT	1 cut(s)	384
PciSI	GCTCTTC	2 cut(s)	717, 1136
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	3 cut(s)	820, 1063, 1081
PfeI	GAWTC	3 cut(s)	407, 431, 899
PflFI	GACNNNGTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	1050
PkrI	GCNGC	9 cut(s)	157, 160, 193, 196, 294, 760, 763, 766, 820
Ple19I	CGATCG	1 cut(s)	1337
PleI	GAGTC	5 cut(s)	91, 157, 251, 407, 1288
PpsI	GAGTC	5 cut(s)	91, 157, 251, 407, 1288
PshBI	ATTAAT	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	1050, 1085
PspGI	CCWGG	2 cut(s)	1050, 1085
PspN4I	GGNNCC	3 cut(s)	565, 966, 1049
PspPI	GGNCC	2 cut(s)	52, 662
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	964
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	1337
PvuII	CAGCTG	1 cut(s)	946
RsaI	GTAC	3 cut(s)	326, 623, 1043
RsaNI	GTAC	3 cut(s)	325, 622, 1042
SacI	GAGCTC	1 cut(s)	354
SapI	GCTCTTC	2 cut(s)	717, 1136
SaqAI	TTAA	6 cut(s)	137, 552, 636, 936, 1239, 1266
SatI	GCNGC	9 cut(s)	156, 159, 192, 195, 293, 759, 762, 765, 819
Sau3AI	GATC	8 cut(s)	862, 940, 964, 1017, 1066, 1291, 1318, 1334
Sau96I	GGNCC	2 cut(s)	52, 662
SchI	GAGTC	5 cut(s)	92, 157, 251, 407, 1289
ScrFI	CCNGG	3 cut(s)	665, 1052, 1087
SduI	GDGCHC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	4 cut(s)	10, 500, 923, 1265
SmoI	CTYRAG	4 cut(s)	10, 500, 923, 1265
SseBI	AGGCCT	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	3 cut(s)	663, 1050, 1085
TaaI	ACNGT	2 cut(s)	707, 853
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	243, 1020, 1333
TaqII	GACCGA	1 cut(s)	40
TatI	WGTACW	2 cut(s)	621, 1041
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	3 cut(s)	407, 431, 899
Tru1I	TTAA	6 cut(s)	137, 552, 636, 936, 1239, 1266
Tru9I	TTAA	6 cut(s)	137, 552, 636, 936, 1239, 1266
TseI	GCWGC	8 cut(s)	155, 158, 191, 194, 292, 761, 764, 818
TspDTI	ATGAA	4 cut(s)	23, 321, 921, 1359
TspGWI	ACGGA	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	446
Vha464I	CTTAAG	1 cut(s)	1265
VpaK11BI	GGWCC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	137
XapI	RAATTY	4 cut(s)	460, 482, 746, 1207
XmiI	GTMKAC	1 cut(s)	1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.