Rorug02G0604000

protein KRI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009859
Physical Location & Seq
Forward (+)
72215066 .. 72215767
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0604000.1

Sequence Viewer

Length: 702 bp
ATGGATGAGATCATTTACGAAAAAAACCAGTTCCAATTCTATCTGAAAGTTAGCAACCTTGAATGTGACGAGACAGAAGTACCTGACTCCGAAGCTCCAGTACCACTTGAGGTTGTGTTCAAGTCCCGTGTCCTTCACTACGCCTTCGATCATTCTTCAGCTACTTTTGATCCCGCTAACGACTTTGTTAGTTGCGATTACAAGAAGACAATATGTGGATGTTGTGATCTTCGCATTTTGTCTTCGTCGACAGAGATTCTTTCTAAGTCGATGTCTGCAGCAAACCCTGACATCAAGCCGGGAAGTGATTTTCACGATGAGATTGTGAATAAAATTGTCAGAGTTGTCAACCGCTACTCTGACTCCCAGTACATTGATTGGATCAAGCTATTGAAGGTGAAAGTTGAAATAACTGAACAAGTATTGGATCGCTGCGAGTGCGAGGAGTGTAGAGCTACAAGGGAATCGATTTTGATGGCAGAGAGGGAAGCAGAAAAGTTAATTGTACCCGCGAGTGAGTCATCGATCAAGAAGCTACTGAAGAGGGTTAGGGTAGTGGCCGCAGACTTGGAGGAGGGTCATGAAGGTCGTCAAAGAAAAAGAACACTATGCCAAAAAAGCTATCAGACAACAGAGTTCAGACGACAGAATGGTCATTTTCTGTCGTCTGAGTGTTTCAGACTAAACTCAGACGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kri1 Kri1_C

Protein Analysis

233

Amino Acids

26.84

Weight (kDa)

5.3

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 651
AccI GTMKAC 1 cut(s) 248
AccII CGCG 1 cut(s) 512
AciI CCGC 4 cut(s) 174, 352, 510, 561
AclWI GGATC 3 cut(s) 164, 389, 435
AcoI YGGCCR 1 cut(s) 558
AcuI CTGAAG 2 cut(s) 141, 560
AfaI GTAC 4 cut(s) 81, 102, 371, 507
AgsI TTSAA 4 cut(s) 62, 121, 394, 407
AluBI AGCT 6 cut(s) 95, 161, 388, 455, 535, 621
AluI AGCT 6 cut(s) 95, 161, 388, 455, 535, 621
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 3 cut(s) 164, 389, 435
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 278, 432
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbsI GAAGAC 2 cut(s) 212, 234
BbvI GCAGC 2 cut(s) 290, 419
BccI CCATC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 279, 433, 561
BlsI GCNGC 3 cut(s) 280, 434, 562
Bme1390I CCNGG 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 212, 234
BpmI CTGGAG 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 300
Bsa29I ATCGAT 2 cut(s) 467, 524
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse1I ACTGG 3 cut(s) 28, 98, 367
BseCI ATCGAT 2 cut(s) 467, 524
BseGI GGATG 2 cut(s) 10, 224
BseMII CTCAG 2 cut(s) 660, 702
BseNI ACTGG 3 cut(s) 28, 98, 367
BseRI GAGGAG 2 cut(s) 458, 587
BseXI GCAGC 2 cut(s) 290, 419
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 560
BshVI ATCGAT 2 cut(s) 467, 524
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 560
Bsp143I GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
BspACI CCGC 4 cut(s) 174, 352, 510, 561
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 2 cut(s) 661, 701
BspDI ATCGAT 2 cut(s) 467, 524
BspFNI CGCG 1 cut(s) 512
BspHI TCATGA 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 3 cut(s) 164, 389, 435
BsrI ACTGG 3 cut(s) 28, 98, 367
BssMI GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
Bst6I CTCTTC 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 264, 669, 688
BstF5I GGATG 2 cut(s) 10, 224
BstFNI CGCG 1 cut(s) 512
BstKTI GATC 7 cut(s) 12, 151, 172, 229, 384, 430, 528
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
BstMWI GCNNNNNNNGC 2 cut(s) 438, 618
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 290, 419
BstV2I GAAGAC 2 cut(s) 212, 234
Bsu15I ATCGAT 2 cut(s) 467, 524
BsuRI GGCC 1 cut(s) 560
BsuTUI ATCGAT 2 cut(s) 467, 524
BtsCI GGATG 2 cut(s) 10, 224
CciI TCATGA 1 cut(s) 580
ClaI ATCGAT 2 cut(s) 467, 524
Csp6I GTAC 4 cut(s) 80, 101, 370, 506
CviAII CATG 1 cut(s) 581
CviJI RGCY 8 cut(s) 95, 161, 298, 388, 455, 535, 560, 621
CviKI_1 RGCY 8 cut(s) 95, 161, 298, 388, 455, 535, 560, 621
CviQI GTAC 4 cut(s) 80, 101, 370, 506
DdeI CTNAG 3 cut(s) 264, 669, 688
DpnI GATC 7 cut(s) 11, 150, 171, 228, 383, 429, 527
DpnII GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
DrdI GACNNNNNNGTC 1 cut(s) 651
DseDI GACNNNNNNGTC 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 141, 560
FaeI CATG 1 cut(s) 584
FaiI YATR 4 cut(s) 214, 582, 610, 700
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 580
FauI CCCGC 2 cut(s) 181, 517
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 279, 433, 561
FokI GGATG 2 cut(s) 17, 231
Fsp4HI GCNGC 3 cut(s) 279, 433, 561
GluI GCNGC 3 cut(s) 279, 433, 561
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 560
HapII CCGG 1 cut(s) 299
Hin1II CATG 1 cut(s) 584
HincII GTYRAC 2 cut(s) 249, 349
HindII GTYRAC 2 cut(s) 249, 349
HinfI GANTC 5 cut(s) 86, 256, 362, 464, 518
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 2 cut(s) 249, 349
Hpy188I TCNGA 9 cut(s) 45, 91, 341, 361, 627, 641, 670, 680, 691
Hpy188III TCNNGA 3 cut(s) 314, 529, 581
Hpy8I GTNNAC 2 cut(s) 249, 349
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 143, 154, 388, 578
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 438, 618
HpyF3I CTNAG 3 cut(s) 264, 669, 688
Hsp92II CATG 1 cut(s) 584
Kzo9I GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 41, 96, 111, 300, 312, 380
Lsp1109I GCAGC 2 cut(s) 290, 419
MaeIII GTNAC 1 cut(s) 65
MalI GATC 7 cut(s) 11, 150, 171, 228, 383, 429, 527
MboI GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
MboII GAAGA 5 cut(s) 147, 217, 221, 234, 553
MluCI AATT 3 cut(s) 35, 333, 501
MlyI GAGTC 3 cut(s) 80, 356, 527
MnlI CCTC 6 cut(s) 103, 436, 477, 537, 565, 568
MseI TTAA 1 cut(s) 500
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 2 cut(s) 438, 618
NciI CCSGG 1 cut(s) 300
NdeII GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
NlaIII CATG 1 cut(s) 584
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 580
PfeI GAWTC 2 cut(s) 256, 464
PkrI GCNGC 3 cut(s) 280, 434, 562
PleI GAGTC 3 cut(s) 80, 356, 526
PpsI GAGTC 3 cut(s) 80, 356, 526
PstI CTGCAG 1 cut(s) 280
RsaI GTAC 4 cut(s) 81, 102, 371, 507
RsaNI GTAC 4 cut(s) 80, 101, 370, 506
SalI GTCGAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 3 cut(s) 279, 433, 561
Sau3AI GATC 7 cut(s) 9, 148, 169, 226, 381, 427, 525
SchI GAGTC 3 cut(s) 80, 356, 527
ScrFI CCNGG 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 35, 333, 501
SsiI CCGC 4 cut(s) 174, 352, 510, 561
StyD4I CCNGG 1 cut(s) 298
TaqI TCGA 5 cut(s) 147, 248, 269, 467, 524
TasI AATT 3 cut(s) 35, 333, 501
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 2 cut(s) 256, 464
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 278, 432
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 597
XmiI GTMKAC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.