MD12G1263700.v1.1

protein KRI1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
33013673 .. 33016865
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1263700.v1.1.491

Sequence Viewer

Length: 2040 bp
ATGGGCGTTCTTCAACTATTTGACGGCGGCAGCGACTCCGAGAACGACGACGTACCGCAGCTCAAAATCAATGAAGATTTCGCTCGCAGGTACGAACACAACAAGAAGCGGGAGGAGCTCCAGCGCTATGAGGAACTGAAGAAGCGAGGCCTCGTGGCTGACCCCTCCGATGCTTCAGACTCTGAACCGGATTTTGAATCGGACGACGACTACGCCCATGTCGCCAATTCCAAGAAGAGAGAATTGGAGTTTTTGGATGGTCTGCTCAAGGTGAAAAAGCATGACCCTATCTTGAAAATCAAAGATGTTGTTTTGTTTAATTCTGATGGAGCTGAAATTATCGGAAACAATGGAGGAGGGGGAGAGGGAAGGGCGAAGAATAGGAGGAAGATGTACTTGAAAGATGTTAACGCTAAGCATTTGATCGAGGACGGCCCGGAACTGGCGGAGGAGGATGACAAGAACATTGGTAAAAACAGTAAGGTCTACAACGAAGAGCAAGAGCGGATAAGGAGAGAATTCTTACAGGCCGCCGCAACCGAGGAGGATGATGATGGTGAGTTTTTGATAGAGAAGAATAAGAATGCTGCGGGGGATGATGATGGTGATAGTGTTGATAATGATCAGTATGAGAAGGCATTGGATGAGTGTTTCCCCGAATCTGATGAAAATGCTATGTTTCTCAAGAAGTTCTTTAAGGATCAGCTATGGAAGGAGGATAAGGATCCCGAGTTAAAGGAGGAGGATTTGGAGGTGGTGTCTGAGGATGAGATGGAGATCGAAAGGCAGGAGGAGTATGAGCACAGGTTCCAGGAGAATGCAGGTGATCGGATTATGGGGCATTCCAGGCAAGTTGAGGGGTCGGTGAGGAAGAAGGTCAAGGCGAGGAAGGAGCAGAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAATGACGAGAAGGTTAAGAAGATAATGGAGATTGCGGGACTTAAGGAGGGCGAGGTGTCTACATTTAATCCAAAGGAGTTGGAGAAGGAATTTGATCCACAAGAGTATGATAGGATGATGAAGAAGGCTTTTGGTGAGAAGTATTATCAGGCAGAGGATGCTGACTTAGAGCATTATAGTGATATGGACAAGGATGATGATGAGATTGAGAAACCGGACTTTGATAGGGAGGATGAGTTGCTTGGGCTTCCTAAAGGTTGGGATACTGTTGGTTCTGGTGACGGGTTCTTAGCTGCAAGGGAGAAGGCTTTGAAGCGGAAAAAGGAAAATGTTGGTGACCATGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGACGAAGTGGAAGAGGAAGGGGAAGAGGAAGTGGAAGAGGAAGAAGAAGAGGAAGTGGAAGAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGGAAAAATGAGTGAGGAAGATAAACAAGAGAAAAAGCGTAAATTAGCTTTATTGGAGAGAGCTAAGAAGGAGATGATGGATGAATACTATAAGTTGGATTATGAGGATACAATTGGAGACTTGAAGACCAGATTCAAGTATGCTAAAATAAAACCTAATAGATATGGCTTGACTACTGCTGAGATATTAGCGATGGATGAAAAGGAGTTGAATCAATATGTGTCTTTAAAGAAGCTTGCCCCTTATACAGAGAAAGAGTGGAAGGTACCAAACAACAAGAGAATGGAGATAAAGCAGAAAGCTAAGGAGATTTTCAGACAAGGAAATGTGGGTAATAAAAAGAATCGCAAGAAGCTGAGAATAAGTGAAGCAGCTAAGGGTTCAAGCTTATCAAAGGGTGCCGCAGGGCAATCATCAATGGCTGCCCCGGAACATGGGAAAGAACAAGTAGGGGACTCAAATGGTGATAAAAAAGAATCCAGGAGTGCTAGAAGAAGGCGTCTCCAAGCTGCACGAAAATTACCAGCTTCTAGGCTCATGGCATATGGGGTGGTACCTGTAAAATCTAAGAAAAAAGGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

680

Amino Acids

78.95

Weight (kDa)

4.85

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kri1 PF05178 305 - 407 1.6e-18 KRI1-like family
Kri1_C PF12936 506 - 588 2.8e-30 KRI1-like family C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 812
Acc36I ACCTGC 2 cut(s) 78, 812
Acc65I GGTACC 2 cut(s) 1717, 2005
AccB1I GGYRCC 3 cut(s) 1717, 1850, 2005
AccBSI CCGCTC 1 cut(s) 505
AccI GTMKAC 2 cut(s) 486, 1043
AclWI GGATC 4 cut(s) 708, 719, 732, 1073
AcsI RAATTY 3 cut(s) 518, 967, 1073
AcuI CTGAAG 2 cut(s) 158, 159
AcyI GRCGYC 1 cut(s) 1951
AfaI GTAC 5 cut(s) 54, 92, 395, 1719, 2007
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 442, 1886
AflII CTTAAG 1 cut(s) 1025
AjnI CCWGG 3 cut(s) 810, 845, 1931
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
Alw21I GWGCWC 2 cut(s) 120, 804
Alw26I GTCTC 2 cut(s) 1563, 1958
AlwI GGATC 4 cut(s) 708, 719, 732, 1073
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 728
Aor51HI AGCGCT 1 cut(s) 125
AoxI GGCC 3 cut(s) 148, 433, 528
ApeKI GCWGC 7 cut(s) 30, 58, 587, 1277, 1823, 1874, 1961
ApoI RAATTY 3 cut(s) 518, 967, 1073
Asp718I GGTACC 2 cut(s) 1717, 2005
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 2 cut(s) 437, 1880
AsuHPI GGTGA 9 cut(s) 283, 569, 617, 836, 877, 1130, 1274, 1331, 1928
AvaI CYCGRG 1 cut(s) 728
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 3 cut(s) 1717, 1850, 2005
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 1362, 1583
Bbv12I GWGCWC 2 cut(s) 120, 804
BbvI GCAGC 7 cut(s) 42, 70, 574, 1264, 1835, 1861, 1948
BccI CCATC 8 cut(s) 251, 320, 548, 596, 766, 913, 1522, 1639
BceAI ACGGC 2 cut(s) 40, 448
BciT130I CCWGG 3 cut(s) 812, 847, 1933
BciVI GTATCC 2 cut(s) 1240, 1552
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 2 cut(s) 437, 1880
BcoDI GTCTC 2 cut(s) 1563, 1958
BfaI CTAG 2 cut(s) 1941, 1983
BfoI RGCGCY 1 cut(s) 127
BfrI CTTAAG 1 cut(s) 1025
BfuAI ACCTGC 2 cut(s) 78, 812
BfuI GTATCC 2 cut(s) 1240, 1552
BlpI GCTNAGC 1 cut(s) 414
Bme1390I CCNGG 5 cut(s) 437, 812, 847, 1880, 1933
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 5 cut(s) 726, 809, 1719, 1852, 2007
BmrFI CCNGG 5 cut(s) 437, 812, 847, 1880, 1933
BmsI GCATC 2 cut(s) 160, 1132
BpiI GAAGAC 2 cut(s) 1362, 1583
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 2 cut(s) 1755, 1827
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 251, 668
BpuMI CCSGG 2 cut(s) 437, 1880
BsaBI GATNNNNATC 3 cut(s) 621, 723, 776
BsaHI GRCGYC 1 cut(s) 1951
BsaJI CCNNGG 2 cut(s) 540, 1878
BsaWI WCCGGW 2 cut(s) 187, 1198
BsaXI ACNNNNNCTCC 6 cut(s) 743, 773, 935, 965, 1205, 1235
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 1886
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 3 cut(s) 621, 723, 776
BseBI CCWGG 3 cut(s) 812, 847, 1933
BseDI CCNNGG 2 cut(s) 540, 1878
BseJI GATNNNNATC 3 cut(s) 621, 723, 776
BseLI CCNNNNNNNGG 2 cut(s) 442, 1886
BseMII CTCAG 3 cut(s) 753, 1623, 1799
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 9 cut(s) 128, 369, 464, 557, 755, 806, 926, 959, 962
BseXI GCAGC 7 cut(s) 42, 70, 574, 1264, 1835, 1861, 1948
BsgI GTGCAG 1 cut(s) 1947
BshFI GGCC 3 cut(s) 150, 435, 530
BshNI GGYRCC 3 cut(s) 1717, 1850, 2005
BsiHKAI GWGCWC 2 cut(s) 120, 804
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 4 cut(s) 188, 437, 1199, 1880
BslFI GGGAC 2 cut(s) 1035, 1919
BslI CCNNNNNNNGG 2 cut(s) 442, 1886
BsmAI GTCTC 2 cut(s) 1563, 1958
BsmBI CGTCTC 1 cut(s) 1958
BsmFI GGGAC 2 cut(s) 1035, 1919
BsmI GAATGC 3 cut(s) 589, 823, 841
BsnI GGCC 3 cut(s) 150, 435, 530
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 2 cut(s) 120, 804
Bsp143I GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
Bsp1720I GCTNAGC 1 cut(s) 414
BspANI GGCC 3 cut(s) 150, 435, 530
BspCNI CTCAG 3 cut(s) 754, 1624, 1800
BspLI GGNNCC 5 cut(s) 726, 809, 1719, 1852, 2007
BspMI ACCTGC 2 cut(s) 78, 812
BspPI GGATC 4 cut(s) 708, 719, 732, 1073
BspQI GCTCTTC 2 cut(s) 489, 896
BspT107I GGYRCC 3 cut(s) 1717, 1850, 2005
BspTI CTTAAG 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 505
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 540, 1878
BssMI GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
BssNI GRCGYC 1 cut(s) 1951
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 812, 847, 1933
Bst4CI ACNGT 2 cut(s) 479, 1252
BstACI GRCGYC 1 cut(s) 1951
BstAFI CTTAAG 1 cut(s) 1025
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstC8I GCNNGC 2 cut(s) 85, 1689
BstEII GGTNACC 1 cut(s) 1319
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 7 cut(s) 426, 625, 703, 727, 780, 829, 1081
BstMAI GTCTC 2 cut(s) 1563, 1958
BstMBI GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
BstMWI GCNNNNNNNGC 4 cut(s) 115, 221, 847, 1142
BstNI CCWGG 3 cut(s) 812, 847, 1933
BstPI GGTNACC 1 cut(s) 1319
BstSCI CCNGG 5 cut(s) 435, 810, 845, 1878, 1931
BstV1I GCAGC 7 cut(s) 42, 70, 574, 1264, 1835, 1861, 1948
BstV2I GAAGAC 2 cut(s) 1362, 1583
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuI GTATCC 2 cut(s) 1240, 1552
BsuRI GGCC 3 cut(s) 150, 435, 530
BtgZI GCGATG 1 cut(s) 1658
BtsIMutI CAGTG 1 cut(s) 2035
BveI ACCTGC 2 cut(s) 78, 812
Cac8I GCNNGC 2 cut(s) 85, 1689
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 1940
Csp6I GTAC 5 cut(s) 53, 91, 394, 1718, 2006
CviAII CATG 5 cut(s) 218, 281, 1325, 1886, 1990
CviQI GTAC 5 cut(s) 53, 91, 394, 1718, 2006
DpnI GATC 7 cut(s) 425, 624, 702, 726, 779, 828, 1080
DpnII GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
DraI TTTAAA 1 cut(s) 1680
EciI GGCGGA 1 cut(s) 461
Ecl136II GAGCTC 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 120
Eco47III AGCGCT 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 158, 159
Eco88I CYCGRG 1 cut(s) 728
Eco91I GGTNACC 1 cut(s) 1319
EcoICRI GAGCTC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 1319
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 810, 845, 1931
EcoT38I GRGCYC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 1958
FaeI CATG 5 cut(s) 221, 284, 1328, 1889, 1993
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 677, 709
FaqI GGGAC 2 cut(s) 1035, 1919
FatI CATG 5 cut(s) 217, 280, 1324, 1885, 1989
FauI CCCGC 3 cut(s) 102, 583, 1012
FauNDI CATATG 1 cut(s) 1996
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 2 cut(s) 486, 1043
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 2 cut(s) 1941, 1983
GlaI GCGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 3 cut(s) 150, 435, 530
HapII CCGG 4 cut(s) 188, 437, 1199, 1880
HgaI GACGC 1 cut(s) 1940
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 1951
Hin1II CATG 5 cut(s) 221, 284, 1328, 1889, 1993
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 2 cut(s) 1685, 1837
HinfI GANTC 9 cut(s) 35, 179, 197, 659, 1584, 1663, 1795, 1907, 1928
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 4 cut(s) 188, 437, 1199, 1880
HphI GGTGA 9 cut(s) 283, 569, 617, 836, 877, 1130, 1274, 1331, 1928
Hpy166II GTNNAC 3 cut(s) 409, 487, 1044
Hpy188III TCNNGA 3 cut(s) 292, 685, 728
Hpy8I GTNNAC 3 cut(s) 409, 487, 1044
Hpy99I CGWCG 3 cut(s) 50, 53, 209
HpyCH4III ACNGT 2 cut(s) 479, 1252
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 821, 929, 1280, 1964
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 221, 847, 1142
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 1951
Hsp92II CATG 5 cut(s) 221, 284, 1328, 1889, 1993
HspAI GCGC 1 cut(s) 124
KpnI GGTACC 2 cut(s) 1721, 2009
Ksp22I TGATCA 1 cut(s) 622
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
LguI GCTCTTC 2 cut(s) 489, 896
LmnI GCTCC 4 cut(s) 115, 123, 329, 892
Lsp1109I GCAGC 7 cut(s) 42, 70, 574, 1264, 1835, 1861, 1948
LweI GCATC 2 cut(s) 160, 1132
MaeI CTAG 2 cut(s) 1941, 1983
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 1262, 1319
MalI GATC 7 cut(s) 425, 624, 702, 726, 779, 828, 1080
MbiI CCGCTC 1 cut(s) 505
MboI GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
MfeI CAATTG 1 cut(s) 1563
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 120, 804
MlyI GAGTC 3 cut(s) 29, 173, 1901
MmeI TCCRAC 3 cut(s) 915, 1044, 1527
MseI TTAA 8 cut(s) 318, 408, 696, 734, 999, 1026, 1050, 1679
MslI CAYNNNNRTG 1 cut(s) 1161
MspCI CTTAAG 1 cut(s) 1025
MspI CCGG 4 cut(s) 188, 437, 1199, 1880
MspR9I CCNGG 5 cut(s) 437, 812, 847, 1880, 1933
MunI CAATTG 1 cut(s) 1563
Mva1269I GAATGC 3 cut(s) 589, 823, 841
MvaI CCWGG 3 cut(s) 812, 847, 1933
MwoI GCNNNNNNNGC 4 cut(s) 115, 221, 847, 1142
NciI CCSGG 2 cut(s) 437, 1880
NdeI CATATG 1 cut(s) 1996
NdeII GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
NlaIII CATG 5 cut(s) 221, 284, 1328, 1889, 1993
NlaIV GGNNCC 5 cut(s) 726, 809, 1719, 1852, 2007
NmuCI GTSAC 2 cut(s) 1262, 1319
PaqCI CACCTGC 1 cut(s) 812
PceI AGGCCT 1 cut(s) 150
PciSI GCTCTTC 2 cut(s) 489, 896
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 3 cut(s) 589, 823, 841
PfeI GAWTC 6 cut(s) 197, 659, 1584, 1663, 1795, 1928
PfoI TCCNGGA 2 cut(s) 810, 1931
PleI GAGTC 3 cut(s) 29, 173, 1901
PpsI GAGTC 3 cut(s) 29, 173, 1901
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 3 cut(s) 810, 845, 1931
PspEI GGTNACC 1 cut(s) 1319
PspGI CCWGG 3 cut(s) 810, 845, 1931
PspN4I GGNNCC 5 cut(s) 726, 809, 1719, 1852, 2007
PspPI GGNCC 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 724
RsaI GTAC 5 cut(s) 54, 92, 395, 1719, 2007
RsaNI GTAC 5 cut(s) 53, 91, 394, 1718, 2006
RseI CAYNNNNRTG 1 cut(s) 1161
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 489, 896
SaqAI TTAA 8 cut(s) 318, 408, 696, 734, 999, 1026, 1050, 1679
Sau3AI GATC 7 cut(s) 423, 622, 700, 724, 777, 826, 1078
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 3 cut(s) 29, 173, 1901
ScrFI CCNGG 5 cut(s) 437, 812, 847, 1880, 1933
SduI GDGCHC 2 cut(s) 120, 804
SfaNI GCATC 2 cut(s) 160, 1132
SmiMI CAYNNNNRTG 1 cut(s) 1161
SmlI CTYRAG 3 cut(s) 266, 683, 1025
SmoI CTYRAG 3 cut(s) 266, 683, 1025
SseBI AGGCCT 1 cut(s) 150
SspMI CTAG 2 cut(s) 1941, 1983
SstI GAGCTC 1 cut(s) 120
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 5 cut(s) 435, 810, 845, 1878, 1931
TaaI ACNGT 2 cut(s) 479, 1252
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 426, 780
TatI WGTACW 1 cut(s) 393
TauI GCSGC 4 cut(s) 30, 533, 536, 1856
TfiI GAWTC 6 cut(s) 197, 659, 1584, 1663, 1795, 1928
Tru1I TTAA 8 cut(s) 318, 408, 696, 734, 999, 1026, 1050, 1679
Tru9I TTAA 8 cut(s) 318, 408, 696, 734, 999, 1026, 1050, 1679
TseFI GTSAC 2 cut(s) 1262, 1319
TseI GCWGC 7 cut(s) 30, 58, 587, 1277, 1823, 1874, 1961
Tsp45I GTSAC 2 cut(s) 1262, 1319
TspDTI ATGAA 6 cut(s) 87, 681, 1118, 1446, 1548, 1665
Vha464I CTTAAG 1 cut(s) 1025
XapI RAATTY 3 cut(s) 518, 967, 1073
XmiI GTMKAC 2 cut(s) 486, 1043
XspI CTAG 2 cut(s) 1941, 1983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.