Rroxscaffold_6G00425860

protein KRI1 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
46813265 .. 46815362
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425860.1

Sequence Viewer

Length: 1935 bp
ATGGGTGGTATGCAGCTCTTCGACGGCGGCAGCGACTCAGAAACCGAAGATAAGAATGCTCCCAATCTCAAAATCAATGAAGAATACGCTCGCCGCTATGAGCACAACAAGAATCGGGAGGACCTCCACCGTTACGAGGATCTCAAGAAGCGAGGCCTCGTAGACGACCACCACTCCGATTCTGATTCGTCCTCCGAGGATGACGACGACGACGTCGTTTTGGCAGCCAATTCCAAGAAGAAAGACTTGGAATTCTTCGATGCTATAATCAAGGTAAAAAATCGAGACCCTATCTTGAAAAACAAAGAGGTCGAGTTATTTAAATCTGATGAAACTGAGGTTGAAGATGCTGAAGACGGTGCCGAACTTCCCGAGGATGATGGTAAGCAGTTCCTCAAGAGTTACAGTGAAGAGCAAGAGCAGATAAGGAGGGAATTTTTGGAAGCAGCTGCCAAGGAGGAGGAGGATGATGAGGGGGAGATATTGAGAGTCAAAGGCAGTAATAGTGCTATGGGGGATGAAGCTGATGAGGAGTTCGATAAGAAATTGGATGAGTATTTCGGTCAAGACTTGGATGACAATGCTAGGTTTCTTAGGGACTTCTTTAAGAATAAGATGTGGTTGGACAAGGGGAGTCAGGGAAGAGGTGCTACTGAGGTAAGGGATGAGGATTTGGAGATGGTGTCTGAGGACGAGATGGAGATTGAGAGGCAGGAGGAGTATGAGTATAGGTTCCAGGAGAATGCAGGGGATCAGGTTTTGGGGCATGCCAGGGAGGTCGAGGGGTCGGTGAGGAAGAAGGTCAAGGCAAGGAAGGAGCAGAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAATGATGACAGGGTCAAGAAGATAATGAAGATTGCAGGGATCAAAGAGGGCGAGGAGTCCTTGTTTGATTCCAAGGAGTTGGAGAACGAATTTGACCCCCAGGAGTATGATAGGATGATGAAGAAAGCTTTTGATGATGAGTATTATGGAAATGATGACTCAGACTTTTGTAGCGATATGGATGAGGATGGTGGTGAGATTGAGAAACCGGATTTTGATAAGGAGGATGAGTTACTTGGACTTCCCAAAGGTTGGGATGGTGCTGGGTCTAGTGATGGTTTCTTAGCTGTGAGGGAGAAGATTTTAAAGCTAAAAAAGGAGACTGGTGGTGATAATGATGAAGAGGAGGAAGACCAGGAGGAAGAGAAAGAAGAAGATGGTGATGAAGATGAAGAAGGAGAAGGAGAAGAAGAGAAAGAAGAGGATGGTGATGAAGATGAAGAAGGAGAAGGAGAAGAAGAGAAACTGAGTGAGGAAGGTAAACAAGAGAAAAAGCGTAAATTAGCTATTTTGGAGAGAGCTAAAAAGGAGATGTTGGATGAATACTATAAATTAGACTATGAGGATACAATTGGAGACTTGAAGACTAGATTTAGGTATGCTAAAATAAAGCCTAATAGATTTGGGTTGACTACTGCTGAGGTATTAGTGATGGATGAAAAGGAGTTAAATCAATATGTATCTTTGAAAAAGCTTGCTCCATATGCGGAGAAGGAGTGGAAGGTACCCAATAGTAAGAGAAATGAGATAAAGAAGAGGGCCAGAGAGATTTTCAGACATGGAAAAATGGATCACAAAAAAAGTGCTAAGAAGTTGAAAATTAAGGATGATGTGAAGGATTCAATTTCATCAACACCAGCTGAGGAACGTGGGAAGAAACAAGTACAGGACTCAAATGGTGATACGAGCAAATTATCCAGGACTGCTAGAAGAAGGCTGAACAAAAAGGTTGCAGCATTACCCCCTTCCAGGCTCATTGCATATGGAATGATGCCTCCAAAATCTAAGAACAAAGGAAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

644

Amino Acids

74.87

Weight (kDa)

4.72

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kri1 PF05178 280 - 381 3e-19 KRI1-like family
Kri1_C PF12936 478 - 560 8e-30 KRI1-like family C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
Acc65I GGTACC 1 cut(s) 1633
AccB1I GGYRCC 2 cut(s) 359, 1633
AccB7I CCANNNNNTGG 1 cut(s) 1161
AccI GTMKAC 1 cut(s) 162
AciI CCGC 3 cut(s) 27, 94, 1616
AclWI GGATC 4 cut(s) 147, 759, 956, 1707
AcsI RAATTY 4 cut(s) 251, 434, 892, 998
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 1635, 1794
AfiI CCNNNNNNNGG 3 cut(s) 136, 1161, 1878
AgsI TTSAA 8 cut(s) 298, 344, 889, 898, 1492, 1597, 1726, 1752
AjnI CCWGG 6 cut(s) 735, 770, 1008, 1263, 1826, 1877
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 279, 1223, 1479
AlwI GGATC 4 cut(s) 147, 759, 956, 1707
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 154, 1668
ApeKI GCWGC 6 cut(s) 13, 30, 224, 446, 449, 1862
ApoI RAATTY 4 cut(s) 251, 434, 892, 998
Asp718I GGTACC 1 cut(s) 1633
AspS9I GGNCC 2 cut(s) 121, 1668
AsuHPI GGTGA 6 cut(s) 802, 1115, 1250, 1301, 1349, 1820
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 121
BanI GGYRCC 2 cut(s) 359, 1633
BarI GAAGNNNNNNTAC 2 cut(s) 634, 666
BbsI GAAGAC 3 cut(s) 360, 1266, 1499
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 2 cut(s) 1548, 1770
BbvI GCAGC 6 cut(s) 25, 42, 236, 436, 458, 1874
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
BciVI GTATCC 1 cut(s) 1468
BcoDI GTCTC 3 cut(s) 279, 1223, 1479
BfaI CTAG 4 cut(s) 585, 1179, 1497, 1836
BfuI GTATCC 1 cut(s) 1468
BisI GCNGC 8 cut(s) 14, 28, 31, 94, 225, 447, 450, 1863
BlsI GCNGC 8 cut(s) 15, 29, 32, 95, 226, 448, 451, 1864
Bme1390I CCNGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 121, 1668
BmiI GGNNCC 3 cut(s) 361, 734, 1635
BmrFI CCNGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
BmsI GCATC 3 cut(s) 250, 337, 1890
BpiI GAAGAC 3 cut(s) 360, 1266, 1499
Bpu10I CCTNAGC 2 cut(s) 1548, 1770
BpuEI CTTGAG 2 cut(s) 128, 380
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 6 cut(s) 195, 372, 453, 771, 981, 1008
BsaWI WCCGGW 1 cut(s) 1117
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 1161, 1878
Bse1I ACTGG 1 cut(s) 1237
Bse3DI GCAATG 1 cut(s) 1884
BseBI CCWGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
BseDI CCNNGG 6 cut(s) 195, 372, 453, 771, 981, 1008
BseLI CCNNNNNNNGG 3 cut(s) 136, 1161, 1878
BseMI GCAATG 1 cut(s) 1884
BseMII CTCAG 8 cut(s) 51, 327, 645, 678, 1083, 1367, 1539, 1761
BseNI ACTGG 1 cut(s) 1237
BseRI GAGGAG 9 cut(s) 473, 476, 545, 731, 851, 884, 887, 977, 1268
BseXI GCAGC 6 cut(s) 25, 42, 236, 436, 458, 1874
BseYI CCCAGC 1 cut(s) 1172
BshFI GGCC 2 cut(s) 156, 1670
BshNI GGYRCC 2 cut(s) 359, 1633
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 1118
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 3 cut(s) 136, 1161, 1878
BsmAI GTCTC 3 cut(s) 279, 1223, 1479
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 2 cut(s) 61, 748
BsnI GGCC 2 cut(s) 156, 1670
Bso31I GGTCTC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 4 cut(s) 139, 751, 948, 1699
BspACI CCGC 3 cut(s) 27, 94, 1616
BspANI GGCC 2 cut(s) 156, 1670
BspCNI CTCAG 8 cut(s) 50, 328, 646, 679, 1082, 1368, 1540, 1762
BspLI GGNNCC 3 cut(s) 361, 734, 1635
BspPI GGATC 4 cut(s) 147, 759, 956, 1707
BspQI GCTCTTC 3 cut(s) 23, 405, 821
BspT107I GGYRCC 2 cut(s) 359, 1633
BspTNI GGTCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 1884
BsrI ACTGG 1 cut(s) 1237
BssECI CCNNGG 6 cut(s) 195, 372, 453, 771, 981, 1008
BssMI GATC 4 cut(s) 139, 751, 948, 1699
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 453, 981
Bst2UI CCWGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
Bst4CI ACNGT 3 cut(s) 131, 359, 407
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 91, 768, 1605
BstKTI GATC 4 cut(s) 142, 754, 951, 1702
BstMAI GTCTC 3 cut(s) 279, 1223, 1479
BstMBI GATC 4 cut(s) 139, 751, 948, 1699
BstMWI GCNNNNNNNGC 1 cut(s) 1613
BstNI CCWGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 6 cut(s) 735, 770, 1008, 1263, 1826, 1877
BstV1I GCAGC 6 cut(s) 25, 42, 236, 436, 458, 1874
BstV2I GAAGAC 3 cut(s) 360, 1266, 1499
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 1468
BsuRI GGCC 2 cut(s) 156, 1670
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 3 cut(s) 91, 768, 1605
Cfr13I GGNCC 2 cut(s) 121, 1668
Csp6I GTAC 2 cut(s) 1634, 1793
CviAII CATG 2 cut(s) 767, 1688
CviQI GTAC 2 cut(s) 1634, 1793
DpnI GATC 4 cut(s) 141, 753, 950, 1701
DpnII GATC 4 cut(s) 139, 751, 948, 1699
DraI TTTAAA 2 cut(s) 322, 1215
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 453, 981
Eco147I AGGCCT 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 6 cut(s) 735, 770, 1008, 1263, 1826, 1877
EcoT14I CCWWGG 2 cut(s) 453, 981
ErhI CCWWGG 2 cut(s) 453, 981
FaeI CATG 2 cut(s) 770, 1691
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 611
FatI CATG 2 cut(s) 766, 1687
FauNDI CATATG 2 cut(s) 1612, 1891
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 8 cut(s) 14, 28, 31, 94, 225, 447, 450, 1863
Fsp4HI GCNGC 8 cut(s) 14, 28, 31, 94, 225, 447, 450, 1863
FspBI CTAG 4 cut(s) 585, 1179, 1497, 1836
GluI GCNGC 8 cut(s) 14, 28, 31, 94, 225, 447, 450, 1863
GsaI CCCAGC 1 cut(s) 1176
HaeIII GGCC 2 cut(s) 156, 1670
HapII CCGG 1 cut(s) 1118
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 770, 1691
HincII GTYRAC 1 cut(s) 1539
HindII GTYRAC 1 cut(s) 1539
HindIII AAGCTT 2 cut(s) 1035, 1601
HpaII CCGG 1 cut(s) 1118
HphI GGTGA 6 cut(s) 802, 1115, 1250, 1301, 1349, 1820
Hpy166II GTNNAC 3 cut(s) 163, 1391, 1539
Hpy188I TCNGA 8 cut(s) 40, 178, 184, 196, 328, 688, 1072, 1685
Hpy188III TCNNGA 8 cut(s) 116, 145, 284, 295, 371, 397, 566, 925
Hpy8I GTNNAC 3 cut(s) 163, 1391, 1539
Hpy99I CGWCG 5 cut(s) 26, 209, 212, 215, 218
HpyCH4III ACNGT 3 cut(s) 131, 359, 407
HpyCH4IV ACGT 2 cut(s) 213, 1777
HpyCH4V TGCA 6 cut(s) 13, 746, 854, 944, 1862, 1889
HpyF10VI GCNNNNNNNGC 1 cut(s) 1613
HpySE526I ACGT 2 cut(s) 213, 1777
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 770, 1691
KpnI GGTACC 1 cut(s) 1637
Kzo9I GATC 4 cut(s) 139, 751, 948, 1699
LguI GCTCTTC 3 cut(s) 23, 405, 821
LmnI GCTCC 3 cut(s) 64, 817, 1612
Lsp1109I GCAGC 6 cut(s) 25, 42, 236, 436, 458, 1874
LweI GCATC 3 cut(s) 250, 337, 1890
MaeI CTAG 4 cut(s) 585, 1179, 1497, 1836
MaeII ACGT 2 cut(s) 213, 1777
MaeIII GTNAC 3 cut(s) 131, 401, 1140
MalI GATC 4 cut(s) 141, 753, 950, 1701
MboI GATC 4 cut(s) 139, 751, 948, 1699
MfeI CAATTG 1 cut(s) 1479
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 105
MlyI GAGTC 6 cut(s) 29, 498, 643, 974, 1061, 1793
MmeI TCCRAC 4 cut(s) 603, 840, 969, 1425
MseI TTAA 5 cut(s) 321, 606, 1214, 1577, 1731
MspA1I CMGCKG 2 cut(s) 449, 1769
MspI CCGG 1 cut(s) 1118
MspR9I CCNGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
MunI CAATTG 1 cut(s) 1479
Mva1269I GAATGC 2 cut(s) 61, 748
MvaI CCWGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
MwoI GCNNNNNNNGC 1 cut(s) 1613
NdeI CATATG 2 cut(s) 1612, 1891
NdeII GATC 4 cut(s) 139, 751, 948, 1699
NlaIII CATG 2 cut(s) 770, 1691
NlaIV GGNNCC 3 cut(s) 361, 734, 1635
NspI RCATGY 1 cut(s) 770
PaeI GCATGC 1 cut(s) 770
PceI AGGCCT 1 cut(s) 156
PciSI GCTCTTC 3 cut(s) 23, 405, 821
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 210, 213
PctI GAATGC 2 cut(s) 61, 748
PfeI GAWTC 5 cut(s) 112, 179, 185, 977, 1748
PflFI GACNNNGTC 2 cut(s) 212, 920
PflMI CCANNNNNTGG 1 cut(s) 1161
PfoI TCCNGGA 2 cut(s) 735, 1826
PkrI GCNGC 8 cut(s) 15, 29, 32, 95, 226, 448, 451, 1864
PleI GAGTC 6 cut(s) 29, 497, 642, 973, 1061, 1793
PpsI GAGTC 6 cut(s) 29, 497, 642, 973, 1061, 1793
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 6 cut(s) 735, 770, 1008, 1263, 1826, 1877
PspFI CCCAGC 1 cut(s) 1172
PspGI CCWGG 6 cut(s) 735, 770, 1008, 1263, 1826, 1877
PspN4I GGNNCC 3 cut(s) 361, 734, 1635
PspPI GGNCC 2 cut(s) 121, 1668
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 2 cut(s) 212, 920
PvuII CAGCTG 2 cut(s) 449, 1769
RsaI GTAC 2 cut(s) 1635, 1794
RsaNI GTAC 2 cut(s) 1634, 1793
SapI GCTCTTC 3 cut(s) 23, 405, 821
SaqAI TTAA 5 cut(s) 321, 606, 1214, 1577, 1731
SatI GCNGC 8 cut(s) 14, 28, 31, 94, 225, 447, 450, 1863
Sau3AI GATC 4 cut(s) 139, 751, 948, 1699
Sau96I GGNCC 2 cut(s) 121, 1668
SchI GAGTC 6 cut(s) 29, 498, 643, 974, 1061, 1793
ScrFI CCNGG 6 cut(s) 737, 772, 1010, 1265, 1828, 1879
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 3 cut(s) 250, 337, 1890
SinI GGWCC 1 cut(s) 121
SmiI ATTTAAAT 1 cut(s) 322
SmlI CTYRAG 2 cut(s) 143, 395
SmoI CTYRAG 2 cut(s) 143, 395
SphI GCATGC 1 cut(s) 770
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 3 cut(s) 27, 94, 1616
SspMI CTAG 4 cut(s) 585, 1179, 1497, 1836
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 6 cut(s) 735, 770, 1008, 1263, 1826, 1877
StyI CCWWGG 2 cut(s) 453, 981
SwaI ATTTAAAT 1 cut(s) 322
TaaI ACNGT 3 cut(s) 131, 359, 407
TaiI ACGT 2 cut(s) 216, 1780
TaqI TCGA 6 cut(s) 21, 258, 283, 312, 537, 780
TaqII GACCGA 1 cut(s) 551
TatI WGTACW 1 cut(s) 1792
TauI GCSGC 2 cut(s) 30, 96
TfiI GAWTC 5 cut(s) 112, 179, 185, 977, 1748
Tru1I TTAA 5 cut(s) 321, 606, 1214, 1577, 1731
Tru9I TTAA 5 cut(s) 321, 606, 1214, 1577, 1731
TscAI CASTG 1 cut(s) 412
TseI GCWGC 6 cut(s) 13, 30, 224, 446, 449, 1862
TspRI CASTG 1 cut(s) 412
Tth111I GACNNNGTC 2 cut(s) 212, 920
Van91I CCANNNNNTGG 1 cut(s) 1161
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 4 cut(s) 251, 434, 892, 998
XceI RCATGY 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 4 cut(s) 585, 1179, 1497, 1836
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.