Rh3CG003900

protein KRI1 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
306151 .. 308250
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG003900.1

Sequence Viewer

Length: 2100 bp
ATGGGTGGTATGCAGCTCTTCGACGGCGGCAGCGACTCAGAGACCGAAGACAAGAATGCCCCCAATCTCAAAATCAATGAAGACTACGCTCGCCGCTATGAGCACAACAAGAATCGGGAGGACCTCCACCGTTACGAGGATCTCAAGAAGCGAGGCCTCGTAGAAGACCACTCCGATTCTGATTCGTCCTCCGAGGATGACGACGACGTCGTTTTGGCAGCCAATTCCAAGAAGAGAGACTTGGAATTCTTCGATGCTATAATCAAGGTAAAAAATCGAGACCCTATCTTGAAAAACACAGAGGTCGAGTTATTTAAATCTGATGAAACTGAGGTTGAAGATGCTGGTAATGAAACTGAAGACACTAGTCTAGTGAAAGAGGAGGATAGCAAAACTAAGAAGAAGAAAAAGAATAGCAATGAGACTGAAGAGGAGGGTAGCAAAACTAAGAAGAAGAAGAAAAAGGTCTACTTGAAAGATGTAGTGGCTAATCATTTATTAGAAGACGGTGCCGAACTTCCGGAGGATGATGGTCAGCAGTTCCTCAAGAGTTATAGTGAAGAGCAAGAGCAGATAAGGAGGGAATTTTTGGAAGCAGCTGCTAAGGAGGAGGAGGAGGAGGAGGATGATGAGGGGGAGATATTGAGAGTCAAAGGCAGTAATAGTGCTGTGGGGGATGAAGCTGATGAGGAGTTCGATAAGAAATTGGATGAGTATTTCGGTCAAGACTTGGATGACAATGCTAGGTTTCTCAGGGACTTCTTTAAGAATAAGATGTGGTTGGACAAGGGGAATCAGGGAAGAGGTGCTACTGAGGTTAGGGATGAGGATTTGGAGATGGTGTCTGAGGACGAGATGGAGATTGAGAGGCAGGAGGAGTACGAGTATAGGTTCCAGGAGAATGCAGGGGATCAGGTTTTGGGGCATGCCAGGGAGGTCGAGGGGTCGGTGAGGAAGAAGGTCAAGGCAAGGAAGGAGCAAAGGAAGAGCAAGGAGGAGAGGATGGAGATTGCAAGGTTGGAGAGGGAGGAGGAGTTGAGGCATTTGAAGAATTTGAAGAAGAAGGAGAATGATGACAGGGTCAAGAAGATAATGAAGATTGCAGGGATCAAAGAGGGCGAGGAGTCCTTGTTTGGTTCCAAGGAGTTGGAGAACGAATTTGACCCCCAGGAGTATGATAGGATGATGAAGAAAGCTTTTGATGATGAGTATTATGGAAATGATGACTCAGACTTTTGTAGCGATATGGATGAGGATGGTGGTGAGATTGAGAAACCGGATTTTGATAAGGAGGACGAGTTACTTGGACTTCCCAAAGGTTGGGATGGTGCTGGGTCTAGTGATGGTTTCTTAGCTGTGAGGGAGAAGATTTTAAAGCTAAAAAAGGAGACTGGTGGTGATAATGATGAAGAGGAAGAAGACCAGGAGGAAGAGAAAGAAGAAGATGGTGATGAAGATGAAGATGGTGATGAAGATGAAGAAGGAGAGAAAGAAGAGGATGGTGATGAACATGAAGAAGGAGAAGGAGAAGAAGAGAAACTGAGTGAGGAAGGTAAACAAGAGAAAAAGCGTAAATTAGCTATTTTGGAGAGAGCTAAAAAGGAGATGTTGGATGAATACTATAAATTAGACTATGAGGATACAATTGGAGACTTGAAGACTAGATTTAGGTATGCTAAAATAAAGCCTAATAGATTTGGGTTGACTACTGCTGAGGTATTAGTGATGGATGAAAAGGAGTTAAATCAATATGTATCTTTGAAAAAGCTTGCTCCATATGCGGAGAAGGAGTGGAAGGTACCCAATAGTAAGAGAAATGAGATAAAGAAGAGGGCCAGAGAGGTTTTCAGACATGGAAAAATGGATCACAAAAAAAGTGCTAAGAAGTTGAAAATTAAGGATGATGTGAAGGATTCAATTTCATCAACACCAGCTGAGGAACGTGGGAAGAAACAAGTACAGGACTCAAATGGTGATACGAGCAAATTATCCAGGACTGCTAGAAGAAGGCTGAACAAAAAGGTTGCAGCATTACCCCTTTCCAGGCTCATTGCATATGGAATGATGCCTCCAAAATCTAAGAACAAAGGAAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

699

Amino Acids

81.13

Weight (kDa)

4.78

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kri1 PF05178 333 - 434 3.7e-19 KRI1-like family
Kri1_C PF12936 533 - 615 9.7e-30 KRI1-like family C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AatII GACGTC 1 cut(s) 210
Acc65I GGTACC 1 cut(s) 1798
AccB1I GGYRCC 2 cut(s) 509, 1798
AccB7I CCANNNNNTGG 1 cut(s) 1320
AccI GTMKAC 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 3 cut(s) 27, 94, 1781
AclWI GGATC 4 cut(s) 147, 918, 1115, 1872
AcsI RAATTY 4 cut(s) 245, 584, 1051, 1157
AcuI CTGAAG 2 cut(s) 378, 447
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 881, 1800, 1959
AfiI CCNNNNNNNGG 3 cut(s) 136, 1320, 2043
AgsI TTSAA 9 cut(s) 292, 338, 475, 1048, 1057, 1657, 1762, 1891, 1917
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 6 cut(s) 894, 929, 1167, 1422, 1991, 2042
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 6 cut(s) 35, 231, 273, 416, 1382, 1644
AlwI GGATC 4 cut(s) 147, 918, 1115, 1872
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 2 cut(s) 154, 1833
ApeKI GCWGC 6 cut(s) 13, 30, 218, 596, 599, 2027
ApoI RAATTY 4 cut(s) 245, 584, 1051, 1157
Asp718I GGTACC 1 cut(s) 1798
AspS9I GGNCC 2 cut(s) 121, 1833
AsuHPI GGTGA 7 cut(s) 961, 1274, 1409, 1460, 1478, 1514, 1985
AvaII GGWCC 1 cut(s) 121
BanI GGYRCC 2 cut(s) 509, 1798
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BbsI GAAGAC 7 cut(s) 54, 87, 171, 366, 510, 1425, 1664
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 2 cut(s) 1713, 1935
BbvI GCAGC 6 cut(s) 25, 42, 230, 586, 608, 2039
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
BciVI GTATCC 1 cut(s) 1633
BcoDI GTCTC 6 cut(s) 35, 231, 273, 416, 1382, 1644
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 6 cut(s) 366, 371, 744, 1338, 1662, 2001
BfuI GTATCC 1 cut(s) 1633
BisI GCNGC 8 cut(s) 14, 28, 31, 94, 219, 597, 600, 2028
BlsI GCNGC 8 cut(s) 15, 29, 32, 95, 220, 598, 601, 2029
Bme1390I CCNGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 1833
BmiI GGNNCC 4 cut(s) 511, 893, 1138, 1800
BmrFI CCNGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
BmsI GCATC 3 cut(s) 244, 331, 2055
BoxI GACNNNNGTC 1 cut(s) 366
BpiI GAAGAC 7 cut(s) 54, 87, 171, 366, 510, 1425, 1664
Bpu10I CCTNAGC 3 cut(s) 603, 1713, 1935
BpuEI CTTGAG 2 cut(s) 128, 530
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 2 cut(s) 35, 273
BsaJI CCNNGG 4 cut(s) 192, 930, 1140, 1167
BsaWI WCCGGW 2 cut(s) 520, 1276
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 1320, 2043
Bse1I ACTGG 1 cut(s) 1396
Bse3DI GCAATG 2 cut(s) 424, 2049
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
BseDI CCNNGG 4 cut(s) 192, 930, 1140, 1167
BseLI CCNNNNNNNGG 3 cut(s) 136, 1320, 2043
BseMI GCAATG 2 cut(s) 424, 2049
BseMII CTCAG 9 cut(s) 51, 321, 766, 804, 837, 1242, 1532, 1704, 1926
BseNI ACTGG 1 cut(s) 1396
BseXI GCAGC 6 cut(s) 25, 42, 230, 586, 608, 2039
BseYI CCCAGC 1 cut(s) 1331
BshFI GGCC 2 cut(s) 156, 1835
BshNI GGYRCC 2 cut(s) 509, 1798
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 521, 1277
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 3 cut(s) 136, 1320, 2043
BsmAI GTCTC 6 cut(s) 35, 231, 273, 416, 1382, 1644
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 2 cut(s) 61, 907
BsnI GGCC 2 cut(s) 156, 1835
Bso31I GGTCTC 2 cut(s) 35, 273
Bsp1286I GDGCHC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 4 cut(s) 139, 910, 1107, 1864
BspACI CCGC 3 cut(s) 27, 94, 1781
BspANI GGCC 2 cut(s) 156, 1835
BspCNI CTCAG 9 cut(s) 50, 322, 765, 805, 838, 1241, 1533, 1705, 1927
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 511, 893, 1138, 1800
BspPI GGATC 4 cut(s) 147, 918, 1115, 1872
BspQI GCTCTTC 3 cut(s) 23, 555, 980
BspT107I GGYRCC 2 cut(s) 509, 1798
BspTNI GGTCTC 2 cut(s) 35, 273
BsrDI GCAATG 2 cut(s) 424, 2049
BsrI ACTGG 1 cut(s) 1396
BssECI CCNNGG 4 cut(s) 192, 930, 1140, 1167
BssMI GATC 4 cut(s) 139, 910, 1107, 1864
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 1140
Bst2UI CCWGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
Bst4CI ACNGT 2 cut(s) 131, 509
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 91, 927, 1770
BstKTI GATC 4 cut(s) 142, 913, 1110, 1867
BstMAI GTCTC 6 cut(s) 35, 231, 273, 416, 1382, 1644
BstMBI GATC 4 cut(s) 139, 910, 1107, 1864
BstMWI GCNNNNNNNGC 1 cut(s) 1778
BstNI CCWGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 1 cut(s) 366
BstSCI CCNGG 6 cut(s) 894, 929, 1167, 1422, 1991, 2042
BstV1I GCAGC 6 cut(s) 25, 42, 230, 586, 608, 2039
BstV2I GAAGAC 7 cut(s) 54, 87, 171, 366, 510, 1425, 1664
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 1147
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 1633
BsuRI GGCC 2 cut(s) 156, 1835
Cac8I GCNNGC 3 cut(s) 91, 927, 1770
Cfr13I GGNCC 2 cut(s) 121, 1833
Csp6I GTAC 3 cut(s) 880, 1799, 1958
CviAII CATG 3 cut(s) 926, 1511, 1853
CviQI GTAC 3 cut(s) 880, 1799, 1958
DpnI GATC 4 cut(s) 141, 912, 1109, 1866
DpnII GATC 4 cut(s) 139, 910, 1107, 1864
DraI TTTAAA 2 cut(s) 316, 1374
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 1140
Eco147I AGGCCT 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 35, 273
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 378, 447
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 6 cut(s) 894, 929, 1167, 1422, 1991, 2042
EcoT14I CCWWGG 1 cut(s) 1140
ErhI CCWWGG 1 cut(s) 1140
FaeI CATG 3 cut(s) 929, 1514, 1856
FalI AAGNNNNNCTT 4 cut(s) 224, 256, 455, 487
FaqI GGGAC 1 cut(s) 770
FatI CATG 3 cut(s) 925, 1510, 1852
FauNDI CATATG 2 cut(s) 1777, 2056
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 8 cut(s) 14, 28, 31, 94, 219, 597, 600, 2028
Fsp4HI GCNGC 8 cut(s) 14, 28, 31, 94, 219, 597, 600, 2028
FspBI CTAG 6 cut(s) 366, 371, 744, 1338, 1662, 2001
GluI GCNGC 8 cut(s) 14, 28, 31, 94, 219, 597, 600, 2028
GsaI CCCAGC 1 cut(s) 1335
HaeIII GGCC 2 cut(s) 156, 1835
HapII CCGG 2 cut(s) 521, 1277
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 929, 1514, 1856
HincII GTYRAC 1 cut(s) 1704
HindII GTYRAC 1 cut(s) 1704
HindIII AAGCTT 2 cut(s) 1194, 1766
HpaII CCGG 2 cut(s) 521, 1277
HphI GGTGA 7 cut(s) 961, 1274, 1409, 1460, 1478, 1514, 1985
Hpy166II GTNNAC 3 cut(s) 469, 1556, 1704
Hpy188I TCNGA 8 cut(s) 40, 175, 181, 193, 322, 847, 1231, 1850
Hpy188III TCNNGA 8 cut(s) 116, 145, 278, 289, 521, 547, 725, 1084
Hpy8I GTNNAC 3 cut(s) 469, 1556, 1704
Hpy99I CGWCG 4 cut(s) 26, 206, 209, 212
HpyCH4III ACNGT 2 cut(s) 131, 509
HpyCH4IV ACGT 2 cut(s) 207, 1942
HpyCH4V TGCA 6 cut(s) 13, 905, 1013, 1103, 2027, 2054
HpyF10VI GCNNNNNNNGC 1 cut(s) 1778
HpySE526I ACGT 2 cut(s) 207, 1942
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 929, 1514, 1856
Kpn2I TCCGGA 1 cut(s) 520
KpnI GGTACC 1 cut(s) 1802
Kzo9I GATC 4 cut(s) 139, 910, 1107, 1864
LguI GCTCTTC 3 cut(s) 23, 555, 980
LmnI GCTCC 2 cut(s) 976, 1777
Lsp1109I GCAGC 6 cut(s) 25, 42, 230, 586, 608, 2039
LweI GCATC 3 cut(s) 244, 331, 2055
MaeI CTAG 6 cut(s) 366, 371, 744, 1338, 1662, 2001
MaeII ACGT 2 cut(s) 207, 1942
MaeIII GTNAC 2 cut(s) 131, 1299
MalI GATC 4 cut(s) 141, 912, 1109, 1866
MboI GATC 4 cut(s) 139, 910, 1107, 1864
MfeI CAATTG 1 cut(s) 1644
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 105
MlyI GAGTC 5 cut(s) 29, 657, 1133, 1220, 1958
MmeI TCCRAC 4 cut(s) 762, 999, 1128, 1590
MroI TCCGGA 1 cut(s) 520
MseI TTAA 5 cut(s) 315, 765, 1373, 1742, 1896
MspA1I CMGCKG 2 cut(s) 599, 1934
MspI CCGG 2 cut(s) 521, 1277
MspR9I CCNGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
MunI CAATTG 1 cut(s) 1644
Mva1269I GAATGC 2 cut(s) 61, 907
MvaI CCWGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
MwoI GCNNNNNNNGC 1 cut(s) 1778
NdeI CATATG 2 cut(s) 1777, 2056
NdeII GATC 4 cut(s) 139, 910, 1107, 1864
NlaIII CATG 3 cut(s) 929, 1514, 1856
NlaIV GGNNCC 4 cut(s) 511, 893, 1138, 1800
NspI RCATGY 1 cut(s) 929
PaeI GCATGC 1 cut(s) 929
PceI AGGCCT 1 cut(s) 156
PciSI GCTCTTC 3 cut(s) 23, 555, 980
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 207
PctI GAATGC 2 cut(s) 61, 907
PfeI GAWTC 5 cut(s) 112, 176, 182, 793, 1913
PflFI GACNNNGTC 2 cut(s) 206, 1079
PflMI CCANNNNNTGG 1 cut(s) 1320
PfoI TCCNGGA 2 cut(s) 894, 1991
PkrI GCNGC 8 cut(s) 15, 29, 32, 95, 220, 598, 601, 2029
PleI GAGTC 5 cut(s) 29, 656, 1132, 1220, 1958
PpsI GAGTC 5 cut(s) 29, 656, 1132, 1220, 1958
PpuMI RGGWCCY 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 6 cut(s) 894, 929, 1167, 1422, 1991, 2042
PspFI CCCAGC 1 cut(s) 1331
PspGI CCWGG 6 cut(s) 894, 929, 1167, 1422, 1991, 2042
PspN4I GGNNCC 4 cut(s) 511, 893, 1138, 1800
PspPI GGNCC 2 cut(s) 121, 1833
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 2 cut(s) 206, 1079
PvuII CAGCTG 2 cut(s) 599, 1934
RsaI GTAC 3 cut(s) 881, 1800, 1959
RsaNI GTAC 3 cut(s) 880, 1799, 1958
SapI GCTCTTC 3 cut(s) 23, 555, 980
SaqAI TTAA 5 cut(s) 315, 765, 1373, 1742, 1896
SatI GCNGC 8 cut(s) 14, 28, 31, 94, 219, 597, 600, 2028
Sau3AI GATC 4 cut(s) 139, 910, 1107, 1864
Sau96I GGNCC 2 cut(s) 121, 1833
SchI GAGTC 5 cut(s) 29, 657, 1133, 1220, 1958
ScrFI CCNGG 6 cut(s) 896, 931, 1169, 1424, 1993, 2044
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 3 cut(s) 244, 331, 2055
SinI GGWCC 1 cut(s) 121
SmiI ATTTAAAT 1 cut(s) 316
SmlI CTYRAG 2 cut(s) 143, 545
SmoI CTYRAG 2 cut(s) 143, 545
SpeI ACTAGT 1 cut(s) 365
SphI GCATGC 1 cut(s) 929
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 3 cut(s) 27, 94, 1781
SspMI CTAG 6 cut(s) 366, 371, 744, 1338, 1662, 2001
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 6 cut(s) 894, 929, 1167, 1422, 1991, 2042
StyI CCWWGG 1 cut(s) 1140
SwaI ATTTAAAT 1 cut(s) 316
TaaI ACNGT 2 cut(s) 131, 509
TaiI ACGT 2 cut(s) 210, 1945
TaqI TCGA 6 cut(s) 21, 252, 277, 306, 696, 939
TaqII GACCGA 2 cut(s) 59, 710
TatI WGTACW 1 cut(s) 1957
TauI GCSGC 2 cut(s) 30, 96
TfiI GAWTC 5 cut(s) 112, 176, 182, 793, 1913
Tru1I TTAA 5 cut(s) 315, 765, 1373, 1742, 1896
Tru9I TTAA 5 cut(s) 315, 765, 1373, 1742, 1896
TseI GCWGC 6 cut(s) 13, 30, 218, 596, 599, 2027
Tth111I GACNNNGTC 2 cut(s) 206, 1079
Van91I CCANNNNNTGG 1 cut(s) 1320
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 4 cut(s) 245, 584, 1051, 1157
XceI RCATGY 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 6 cut(s) 366, 371, 744, 1338, 1662, 2001
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.