AT3G24315

Sec20

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014142
Physical Location & Seq
Reverse (-)
8820426 .. 8822822
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24315.1

Sequence Viewer

Length: 882 bp
ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAGAAGACGATTGGACATATTATCTCGATTCAACAGTACGGTAAATCAAGGAGGGGAGATGGAGGAGAAGAGAAGTTTTCGTTACAGAGGCTCAACGGATTGGCTCAGGATGGTCTCTCTCTTCTCAATTCCCTTCAATTCAATTTGGATCTGCTCGCACCTCAGCTTCCTTCTGATGATCAGGTTCAATCCACTCAGTCACTCCTTGAAACGTGGAAGAATCAATATCACAGTTTGAGGGTAAACTTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAGAGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGACAAGCAAATGCTGGCGTGACATCCGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAGCTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTCGTGGCTTTTGATGAATCTACTGGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGATCTCTGTTGTCGAGGACCCGTAATCTACTTTCAACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTTGGATTTTCTCTCTTTGTCTTTGCTGTTGTTTACGTTGTTTCAAAACGCATCGGAATTCTGAAACTGCAACGAATGGCTACTGCTGCTATTAAAGCTCAATTAGCTGGAAAAGCAGCAAATGGTGTAGGAGATGATGTTATGCCGCTCGGACAACAGTTTGATGGCAATACAGTTCCAACTGTTAATATTCCTCTACAACAACGCATGCACGATGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

293

Amino Acids

32.84

Weight (kDa)

8.71

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec20 PF03908 146 - 237 1.1e-33 Sec20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 805
AccI GTMKAC 1 cut(s) 392
AciI CCGC 1 cut(s) 803
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 714
AfaI GTAC 4 cut(s) 56, 95, 508, 546
AgsI TTSAA 9 cut(s) 20, 89, 194, 199, 245, 266, 500, 615, 702
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 7 cut(s) 223, 326, 350, 367, 481, 755, 764
AluI AGCT 7 cut(s) 223, 326, 350, 367, 481, 755, 764
Alw26I GTCTC 2 cut(s) 176, 467
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 5 cut(s) 347, 478, 622, 743, 773
ApoI RAATTY 1 cut(s) 714
AspS9I GGNCC 1 cut(s) 597
AvaII GGWCC 1 cut(s) 597
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 2 cut(s) 35, 68
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 359, 490, 634, 730, 785
BccI CCATC 4 cut(s) 110, 161, 478, 815
BceAI ACGGC 1 cut(s) 491
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 176, 467
BfmI CTRYAG 1 cut(s) 393
BglII AGATCT 1 cut(s) 581
BisI GCNGC 6 cut(s) 348, 479, 623, 744, 774, 803
BlsI GCNGC 6 cut(s) 349, 480, 624, 745, 775, 804
BmcAI AGTACT 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 597
BmiI GGNNCC 1 cut(s) 599
BmsI GCATC 2 cut(s) 430, 717
BpiI GAAGAC 2 cut(s) 35, 68
BplI GAGNNNNNCTC 2 cut(s) 354, 386
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 3 cut(s) 162, 219, 327
BpuEI CTTGAG 2 cut(s) 325, 336
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bse1I ACTGG 1 cut(s) 544
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 3 cut(s) 10, 172, 434
BseMII CTCAG 5 cut(s) 176, 233, 266, 415, 478
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 2 cut(s) 135, 362
BseXI GCAGC 5 cut(s) 359, 490, 634, 730, 785
BsiWI CGTACG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 176, 467
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 205, 235, 581
BspACI CCGC 1 cut(s) 803
BspCNI CTCAG 5 cut(s) 175, 232, 265, 414, 477
BspLI GGNNCC 1 cut(s) 599
BspPI GGATC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 805
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 3 cut(s) 205, 235, 581
BssSI CACGAG 1 cut(s) 518
Bst2BI CACGAG 1 cut(s) 518
Bst4CI ACNGT 7 cut(s) 93, 98, 290, 397, 816, 832, 841
Bst6I CTCTTC 4 cut(s) 29, 120, 183, 351
BstC8I GCNNGC 4 cut(s) 213, 324, 427, 866
BstDEI CTNAG 6 cut(s) 162, 219, 252, 327, 401, 464
BstF5I GGATG 3 cut(s) 10, 172, 434
BstKTI GATC 3 cut(s) 208, 238, 584
BstMAI GTCTC 2 cut(s) 176, 467
BstMBI GATC 3 cut(s) 205, 235, 581
BstMWI GCNNNNNNNGC 5 cut(s) 475, 743, 752, 761, 770
BstNSI RCATGY 1 cut(s) 868
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 5 cut(s) 359, 490, 634, 730, 785
BstV2I GAAGAC 2 cut(s) 35, 68
BstX2I RGATCY 2 cut(s) 205, 581
BstYI RGATCY 2 cut(s) 205, 581
BtsCI GGATG 3 cut(s) 10, 172, 434
Cac8I GCNNGC 4 cut(s) 213, 324, 427, 866
Cfr13I GGNCC 1 cut(s) 597
CseI GACGC 1 cut(s) 614
Csp6I GTAC 4 cut(s) 55, 94, 507, 545
CviAII CATG 2 cut(s) 337, 865
CviQI GTAC 4 cut(s) 55, 94, 507, 545
DdeI CTNAG 6 cut(s) 162, 219, 252, 327, 401, 464
DpnI GATC 3 cut(s) 207, 237, 583
DpnII GATC 3 cut(s) 205, 235, 581
Eam1104I CTCTTC 4 cut(s) 29, 120, 183, 351
EarI CTCTTC 4 cut(s) 29, 120, 183, 351
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 714
FaeI CATG 2 cut(s) 340, 868
FaiI YATR 8 cut(s) 75, 338, 452, 579, 656, 800, 866, 880
FatI CATG 2 cut(s) 336, 864
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 6 cut(s) 348, 479, 623, 744, 774, 803
FokI GGATG 3 cut(s) 17, 179, 421
Fsp4HI GCNGC 6 cut(s) 348, 479, 623, 744, 774, 803
GluI GCNGC 6 cut(s) 348, 479, 623, 744, 774, 803
GsuI CTGGAG 1 cut(s) 561
HgaI GACGC 1 cut(s) 614
Hin1II CATG 2 cut(s) 340, 868
HinfI GANTC 4 cut(s) 85, 277, 389, 533
Hpy166II GTNNAC 5 cut(s) 301, 393, 410, 473, 691
Hpy188I TCNGA 6 cut(s) 232, 404, 439, 713, 720, 809
Hpy188III TCNNGA 5 cut(s) 82, 164, 353, 491, 629
Hpy8I GTNNAC 5 cut(s) 301, 393, 410, 473, 691
HpyAV CCTTC 2 cut(s) 200, 237
HpyCH4III ACNGT 7 cut(s) 93, 98, 290, 397, 816, 832, 841
HpyCH4IV ACGT 3 cut(s) 269, 406, 693
HpyCH4V TGCA 4 cut(s) 322, 622, 727, 868
HpyF10VI GCNNNNNNNGC 5 cut(s) 475, 743, 752, 761, 770
HpyF3I CTNAG 6 cut(s) 162, 219, 252, 327, 401, 464
HpySE526I ACGT 3 cut(s) 269, 406, 693
Hsp92II CATG 2 cut(s) 340, 868
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 205, 235, 581
LpnPI CCDG 8 cut(s) 149, 224, 411, 451, 476, 525, 628, 750
Lsp1109I GCAGC 5 cut(s) 359, 490, 634, 730, 785
LweI GCATC 2 cut(s) 430, 717
MaeII ACGT 3 cut(s) 269, 406, 693
MaeIII GTNAC 3 cut(s) 138, 255, 430
MalI GATC 3 cut(s) 207, 237, 583
MbiI CCGCTC 1 cut(s) 805
MboI GATC 3 cut(s) 205, 235, 581
MboII GAAGA 8 cut(s) 40, 46, 59, 73, 137, 170, 286, 368
MflI RGATCY 2 cut(s) 205, 581
MluCI AATT 7 cut(s) 184, 194, 199, 316, 636, 714, 758
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 640, 860
MseI TTAA 3 cut(s) 549, 750, 843
MslI CAYNNNNRTG 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 481
MwoI GCNNNNNNNGC 5 cut(s) 475, 743, 752, 761, 770
NdeII GATC 3 cut(s) 205, 235, 581
NlaIII CATG 2 cut(s) 340, 868
NlaIV GGNNCC 1 cut(s) 599
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 2 cut(s) 255, 430
NspI RCATGY 1 cut(s) 868
OliI CACNNNNGTG 1 cut(s) 518
PaeI GCATGC 1 cut(s) 868
PfeI GAWTC 3 cut(s) 85, 277, 533
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 6 cut(s) 349, 480, 624, 745, 775, 804
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 597
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 1 cut(s) 597
PspPPI RGGWCCY 1 cut(s) 597
PsrI GAACNNNNNNTAC 2 cut(s) 376, 408
PsuI RGATCY 2 cut(s) 205, 581
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 4 cut(s) 56, 95, 508, 546
RsaNI GTAC 4 cut(s) 55, 94, 507, 545
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 3 cut(s) 549, 750, 843
SatI GCNGC 6 cut(s) 348, 479, 623, 744, 774, 803
Sau3AI GATC 3 cut(s) 205, 235, 581
Sau96I GGNCC 1 cut(s) 597
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 1 cut(s) 398
SfaNI GCATC 2 cut(s) 430, 717
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 2 cut(s) 304, 351
SmoI CTYRAG 2 cut(s) 304, 351
SphI GCATGC 1 cut(s) 868
Sse9I AATT 7 cut(s) 184, 194, 199, 316, 636, 714, 758
SsiI CCGC 1 cut(s) 803
SspI AATATT 1 cut(s) 847
TaaI ACNGT 7 cut(s) 93, 98, 290, 397, 816, 832, 841
TaiI ACGT 3 cut(s) 272, 409, 696
TaqI TCGA 2 cut(s) 83, 593
TasI AATT 7 cut(s) 184, 194, 199, 316, 636, 714, 758
TatI WGTACW 2 cut(s) 506, 544
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 3 cut(s) 85, 277, 533
Tru1I TTAA 3 cut(s) 549, 750, 843
Tru9I TTAA 3 cut(s) 549, 750, 843
TseFI GTSAC 2 cut(s) 255, 430
TseI GCWGC 5 cut(s) 347, 478, 622, 743, 773
Tsp45I GTSAC 2 cut(s) 255, 430
TspDTI ATGAA 1 cut(s) 546
TspGWI ACGGA 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 1 cut(s) 714
XceI RCATGY 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.