Rmu_sc0037456.1_g000001

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037456.1
OG0014142
Physical Location & Seq
Reverse (-)
1 .. 1556
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037456.1_g000001.1.cds

Sequence Viewer

Length: 544 bp
atggacaaggtggagcaggaggtggagaaggtgaagaaggagtgggacgacacctacaacaatgtcgtagttcaaatcaaagccatcgagaactacggcaagtcgccttcttcttctactaccggtgcggagctagagccgaagaaggactcgctgcccagattgaagggcctcgcgcaagacggcttgtcgttgctcaattctctgcagttcaagctcgatctgttcgctccccaattgccgaccgacgatcaggtccagtccgccaaggccttgctcgagtcctggaaaaatcgatcccagagtttgaggttgagtttgaggaatgcgaatttgcaagcgaatgagaatattaggaaagctgctcaaaaagagagggaacttctattgggaggtggaggagagtccacaactcgcaggcgaaacttgcagacaaaggctggcatgacatctgccgcagaaagcatcacagagagccttaggcggactcgtcaactaatggttcaggaggtggaaaggagcgcaggcacactccagactttcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

181

Amino Acids

20.23

Weight (kDa)

9.33

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccII CGCG 1 cut(s) 176
AciI CCGC 4 cut(s) 128, 264, 456, 484
AclWI GGATC 1 cut(s) 291
AcsI RAATTY 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 3 cut(s) 74, 166, 214
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 133, 217, 362
AluI AGCT 3 cut(s) 133, 217, 362
AlwI GGATC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 169, 270
ApeKI GCWGC 2 cut(s) 154, 362
ApoI RAATTY 1 cut(s) 331
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 2 cut(s) 178, 524
AspS9I GGNCC 2 cut(s) 169, 256
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 479
BbvI GCAGC 2 cut(s) 141, 349
BccI CCATC 1 cut(s) 92
BceAI ACGGC 2 cut(s) 112, 199
BciT130I CCWGG 1 cut(s) 286
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 206
BisI GCNGC 3 cut(s) 155, 363, 456
BlsI GCNGC 3 cut(s) 156, 364, 457
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 169, 256
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 518
Bsa29I ATCGAT 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 479
BseBI CCWGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 141, 349
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 171, 272
BshTI ACCGGT 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 2 cut(s) 171, 272
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 3 cut(s) 220, 250, 296
BspACI CCGC 4 cut(s) 128, 264, 456, 484
BspANI GGCC 2 cut(s) 171, 272
BspDI ATCGAT 1 cut(s) 295
BspFNI CGCG 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 210
BspPI GGATC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 220, 250, 296
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 286
BstC8I GCNNGC 4 cut(s) 339, 419, 442, 526
BstDEI CTNAG 1 cut(s) 479
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 2 cut(s) 178, 524
BstKTI GATC 3 cut(s) 223, 253, 299
BstMBI GATC 3 cut(s) 220, 250, 296
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 214, 427
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 206
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 141, 349
Bsu15I ATCGAT 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 479
BsuRI GGCC 2 cut(s) 171, 272
BsuTUI ATCGAT 1 cut(s) 295
Cac8I GCNNGC 4 cut(s) 339, 419, 442, 526
CfoI GCGC 2 cut(s) 178, 524
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 169, 256
ClaI ATCGAT 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 1 cut(s) 445
DdeI CTNAG 1 cut(s) 479
DpnI GATC 3 cut(s) 222, 252, 298
DpnII GATC 3 cut(s) 220, 250, 296
DrdI GACNNNNNNGTC 1 cut(s) 254
DriI GACNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 2 cut(s) 253, 499
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 448
FaiI YATR 1 cut(s) 446
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 155, 363, 456
Fsp4HI GCNGC 3 cut(s) 155, 363, 456
FspBI CTAG 1 cut(s) 134
GlaI GCGC 2 cut(s) 177, 523
GluI GCNGC 3 cut(s) 155, 363, 456
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 2 cut(s) 171, 272
HapII CCGG 1 cut(s) 123
HhaI GCGC 2 cut(s) 178, 524
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 2 cut(s) 176, 522
HinP1I GCGC 2 cut(s) 176, 522
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 4 cut(s) 149, 281, 404, 487
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 408, 494
Hpy188III TCNNGA 3 cut(s) 88, 506, 535
Hpy8I GTNNAC 2 cut(s) 408, 494
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 5 cut(s) 22, 31, 117, 139, 160
HpyCH4V TGCA 3 cut(s) 208, 337, 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 427
HpyF3I CTNAG 1 cut(s) 479
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 2 cut(s) 176, 522
Kzo9I GATC 3 cut(s) 220, 250, 296
LmnI GCTCC 4 cut(s) 13, 130, 235, 519
Lsp1109I GCAGC 2 cut(s) 141, 349
LweI GCATC 1 cut(s) 474
MaeI CTAG 1 cut(s) 134
MalI GATC 3 cut(s) 222, 252, 298
MboI GATC 3 cut(s) 220, 250, 296
MboII GAAGA 4 cut(s) 46, 102, 105, 154
MfeI CAATTG 1 cut(s) 236
MluCI AATT 3 cut(s) 199, 236, 331
MlyI GAGTC 4 cut(s) 143, 290, 413, 481
MnlI CCTC 8 cut(s) 13, 182, 303, 315, 369, 386, 392, 502
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 214, 427
NdeII GATC 3 cut(s) 220, 250, 296
NlaIII CATG 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 278
PceI AGGCCT 1 cut(s) 272
PctI GAATGC 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 3 cut(s) 156, 364, 457
PleI GAGTC 4 cut(s) 143, 289, 412, 481
PpsI GAGTC 4 cut(s) 143, 289, 412, 481
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 2 cut(s) 169, 256
PspXI VCTCGAGB 1 cut(s) 278
PstI CTGCAG 1 cut(s) 210
SatI GCNGC 3 cut(s) 155, 363, 456
Sau3AI GATC 3 cut(s) 220, 250, 296
Sau96I GGNCC 2 cut(s) 169, 256
SchI GAGTC 4 cut(s) 143, 290, 413, 481
ScrFI CCNGG 1 cut(s) 286
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 206
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 199, 236, 331
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 4 cut(s) 128, 264, 456, 484
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 267
TaqI TCGA 4 cut(s) 87, 219, 279, 295
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 199, 236, 331
TauI GCSGC 1 cut(s) 458
TseI GCWGC 2 cut(s) 154, 362
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.