Rh7BG017700

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014142
Physical Location & Seq
Reverse (-)
1147810 .. 1149993
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG017700.1

Sequence Viewer

Length: 915 bp
ATGGACAAGGTGGAGCAGGAGGTGGAGAAGGTGAAGAAGGAGTGGGACGACACCTACAACAATGTCGTAGATCAAATCAAAGCCATCGAGAACTACGGCAAGTCGCCTTCTTCTTCTTCTTCTTCTTCTACTACCGGTGCGGAGCTAGAGCTAGAGCCGAAGAAGGACTCGCTGCCCAGATTGAAGGGCCTCGCGCAAGACGGCTTGTCGTTGCTCAATTCTCTGCAGTTCAAGCTCGATCTGTTCGCTCCTCAATTGCCGACCGACGATCAGGTCCAGTCCGCCAAGGCCTTGCTCGAGTCCTGGAAAAATCGATCCCAGAGTTTGAGGTTGAGTATGAGGAATGCGAATTTGCAAGCGAATGAGAATATTAGGAAAGCTGCTCAGAAAGAGAGGGAACTTCTATTGGGAGGTGGAGGAGAGTCCACAACTCGCAGGCGAAACTTGCAGACAAAGGCTGGCATGACATCTGCTGCGGAAAGCATCACGGAGAGCCTTCGGCGGACTCGTCAACTAATGGTTCAGGAGGTGGAAAGGAGCGCAGGCACACTCCAGACTTTCGAGGAATCCACTGGAGTACTGAAGAAGGCTGAGACTGAATACAAAGGACACCGGAGTTTGTTAATGCGTACCAGAAACCTACTATCCACAATGCAACGCCAAGATATCATTGACAGGGTGATAATTTCAGTGGGATTTTTCCTGTTTACATGTGCTGTTCTTTATGTTGTTTCGAAGCGCATTGGTATACTGACGTTGCAGAGGAAGGTCACAGCTGCTTTCAAGGCCGGTATGGTTGGGAAAGAACTCCAGCCTGGAGCTGTTGGCAACGGTGTAAATCATGCCCCGGTCTATGACAATGTAGTTCATAAAGTTCAGGAACCTTTAGAAAGATTAATGCACGATGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

304

Amino Acids

33.96

Weight (kDa)

9.26

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec20 PF03908 157 - 248 4.8e-29 Sec20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 748
AccII CGCG 1 cut(s) 194
AciI CCGC 4 cut(s) 140, 282, 476, 502
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 2 cut(s) 579, 631
AflIII ACRYGT 1 cut(s) 710
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 184, 232, 784
AhdI GACNNNNNGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 302, 814
AluBI AGCT 6 cut(s) 145, 151, 235, 380, 776, 821
AluI AGCT 6 cut(s) 145, 151, 235, 380, 776, 821
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 3 cut(s) 187, 288, 786
ApeKI GCWGC 4 cut(s) 172, 380, 473, 776
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 1 cut(s) 896
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 3 cut(s) 196, 542, 741
AspS9I GGNCC 2 cut(s) 187, 274
AsuC2I CCSGG 1 cut(s) 848
AsuHPI GGTGA 2 cut(s) 43, 691
AsuII TTCGAA 1 cut(s) 734
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 274
BbvI GCAGC 4 cut(s) 159, 367, 460, 763
BccI CCATC 1 cut(s) 92
BceAI ACGGC 2 cut(s) 112, 217
BciT130I CCWGG 2 cut(s) 304, 816
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 2 cut(s) 146, 152
BfmI CTRYAG 1 cut(s) 224
BisI GCNGC 4 cut(s) 173, 381, 474, 777
BlsI GCNGC 4 cut(s) 174, 382, 475, 778
BmcAI AGTACT 1 cut(s) 579
Bme1390I CCNGG 3 cut(s) 304, 816, 848
Bme18I GGWCC 1 cut(s) 274
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 187, 274
BmiI GGNNCC 1 cut(s) 882
BmrFI CCNGG 3 cut(s) 304, 816, 848
BmsI GCATC 1 cut(s) 492
BpmI CTGGAG 4 cut(s) 536, 594, 794, 837
Bpu14I TTCGAA 1 cut(s) 734
BpuMI CCSGG 1 cut(s) 848
Bsa29I ATCGAT 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 285, 846
BsaWI WCCGGW 2 cut(s) 134, 612
Bse118I RCCGGY 2 cut(s) 134, 788
Bse1I ACTGG 2 cut(s) 277, 577
BseBI CCWGG 2 cut(s) 304, 816
BseCI ATCGAT 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 285, 846
BseMII CTCAG 2 cut(s) 398, 582
BseNI ACTGG 2 cut(s) 277, 577
BseRI GAGGAG 2 cut(s) 240, 432
BseXI GCAGC 4 cut(s) 159, 367, 460, 763
Bsh1236I CGCG 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 189, 290, 788
BshTI ACCGGT 1 cut(s) 134
BshVI ATCGAT 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 135, 613, 789, 848
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 3 cut(s) 189, 290, 788
BsoBI CYCGRG 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 734
Bsp143I GATC 4 cut(s) 70, 238, 268, 314
BspACI CCGC 4 cut(s) 140, 282, 476, 502
BspANI GGCC 3 cut(s) 189, 290, 788
BspCNI CTCAG 2 cut(s) 397, 583
BspDI ATCGAT 1 cut(s) 313
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 882
BspMAI CTGCAG 1 cut(s) 228
BspPI GGATC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 734
BsrFI RCCGGY 2 cut(s) 134, 788
BsrI ACTGG 2 cut(s) 277, 577
BssAI RCCGGY 2 cut(s) 134, 788
BssECI CCNNGG 2 cut(s) 285, 846
BssMI GATC 4 cut(s) 70, 238, 268, 314
BssNAI GTATAC 1 cut(s) 749
BssT1I CCWWGG 1 cut(s) 285
Bst1107I GTATAC 1 cut(s) 749
Bst2UI CCWGG 2 cut(s) 304, 816
Bst4CI ACNGT 1 cut(s) 833
BstBI TTCGAA 1 cut(s) 734
BstC8I GCNNGC 4 cut(s) 357, 437, 460, 544
BstDEI CTNAG 2 cut(s) 384, 591
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 3 cut(s) 196, 542, 741
BstKTI GATC 4 cut(s) 73, 241, 271, 317
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 4 cut(s) 70, 238, 268, 314
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 3 cut(s) 232, 445, 785
BstNI CCWGG 2 cut(s) 304, 816
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 3 cut(s) 302, 814, 846
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 4 cut(s) 159, 367, 460, 763
BstZ17I GTATAC 1 cut(s) 749
Bsu15I ATCGAT 1 cut(s) 313
BsuRI GGCC 3 cut(s) 189, 290, 788
BsuTUI ATCGAT 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 570, 696
Cac8I GCNNGC 4 cut(s) 357, 437, 460, 544
CfoI GCGC 3 cut(s) 196, 542, 741
Cfr10I RCCGGY 2 cut(s) 134, 788
Cfr13I GGNCC 2 cut(s) 187, 274
ClaI ATCGAT 1 cut(s) 313
Csp6I GTAC 2 cut(s) 578, 630
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 3 cut(s) 463, 711, 842
CviQI GTAC 2 cut(s) 578, 630
DdeI CTNAG 2 cut(s) 384, 591
DpnI GATC 4 cut(s) 72, 240, 270, 316
DpnII GATC 4 cut(s) 70, 238, 268, 314
DrdI GACNNNNNNGTC 1 cut(s) 272
DriI GACNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 205
EciI GGCGGA 2 cut(s) 271, 517
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 290
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 302, 814
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 466, 714, 845
FaqI GGGAC 1 cut(s) 59
FatI CATG 3 cut(s) 462, 710, 841
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 173, 381, 474, 777
Fsp4HI GCNGC 4 cut(s) 173, 381, 474, 777
FspBI CTAG 2 cut(s) 146, 152
GlaI GCGC 3 cut(s) 195, 541, 740
GluI GCNGC 4 cut(s) 173, 381, 474, 777
GsuI CTGGAG 4 cut(s) 536, 594, 794, 837
HaeIII GGCC 3 cut(s) 189, 290, 788
HapII CCGG 4 cut(s) 135, 613, 789, 848
HhaI GCGC 3 cut(s) 196, 542, 741
Hin1II CATG 3 cut(s) 466, 714, 845
Hin6I GCGC 3 cut(s) 194, 540, 739
HinP1I GCGC 3 cut(s) 194, 540, 739
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HinfI GANTC 5 cut(s) 167, 299, 422, 505, 566
HpaII CCGG 4 cut(s) 135, 613, 789, 848
HphI GGTGA 2 cut(s) 43, 691
Hpy166II GTNNAC 4 cut(s) 426, 512, 708, 749
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 4 cut(s) 88, 524, 553, 878
Hpy8I GTNNAC 4 cut(s) 426, 512, 708, 749
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 8 cut(s) 22, 31, 117, 157, 178, 506, 580, 760
HpyCH4III ACNGT 1 cut(s) 833
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 6 cut(s) 226, 355, 448, 655, 760, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 445, 785
HpyF3I CTNAG 2 cut(s) 384, 591
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 3 cut(s) 466, 714, 845
HspAI GCGC 3 cut(s) 194, 540, 739
Kzo9I GATC 4 cut(s) 70, 238, 268, 314
LmnI GCTCC 5 cut(s) 13, 142, 253, 537, 818
Lsp1109I GCAGC 4 cut(s) 159, 367, 460, 763
LweI GCATC 1 cut(s) 492
MaeI CTAG 2 cut(s) 146, 152
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 1 cut(s) 769
MalI GATC 4 cut(s) 72, 240, 270, 316
MboI GATC 4 cut(s) 70, 238, 268, 314
MboII GAAGA 9 cut(s) 46, 102, 105, 108, 111, 114, 117, 172, 595
MfeI CAATTG 1 cut(s) 254
MluCI AATT 4 cut(s) 217, 254, 349, 684
MlyI GAGTC 4 cut(s) 161, 308, 431, 499
MseI TTAA 2 cut(s) 623, 896
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 4 cut(s) 135, 613, 789, 848
MspR9I CCNGG 3 cut(s) 304, 816, 848
MunI CAATTG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 2 cut(s) 304, 816
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 232, 445, 785
NciI CCSGG 1 cut(s) 848
NdeII GATC 4 cut(s) 70, 238, 268, 314
NlaIII CATG 3 cut(s) 466, 714, 845
NlaIV GGNNCC 1 cut(s) 882
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 1 cut(s) 714
NspV TTCGAA 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 296
PceI AGGCCT 1 cut(s) 290
PciI ACATGT 1 cut(s) 710
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 566
PfoI TCCNGGA 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 4 cut(s) 174, 382, 475, 778
PleI GAGTC 4 cut(s) 161, 307, 430, 499
PpsI GAGTC 4 cut(s) 161, 307, 430, 499
PscI ACATGT 1 cut(s) 710
PshBI ATTAAT 1 cut(s) 896
Psp6I CCWGG 2 cut(s) 302, 814
PspGI CCWGG 2 cut(s) 302, 814
PspN4I GGNNCC 1 cut(s) 882
PspPI GGNCC 2 cut(s) 187, 274
PspXI VCTCGAGB 1 cut(s) 296
PstI CTGCAG 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 579, 631
RsaNI GTAC 2 cut(s) 578, 630
SaqAI TTAA 2 cut(s) 623, 896
SatI GCNGC 4 cut(s) 173, 381, 474, 777
Sau3AI GATC 4 cut(s) 70, 238, 268, 314
Sau96I GGNCC 2 cut(s) 187, 274
ScaI AGTACT 1 cut(s) 579
SchI GAGTC 4 cut(s) 161, 308, 431, 499
ScrFI CCNGG 3 cut(s) 304, 816, 848
SfaNI GCATC 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 224
Sfr274I CTCGAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 734
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 4 cut(s) 217, 254, 349, 684
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 4 cut(s) 140, 282, 476, 502
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 146, 152
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 3 cut(s) 302, 814, 846
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 833
TaiI ACGT 1 cut(s) 758
TaqI TCGA 6 cut(s) 87, 237, 297, 313, 561, 734
TaqII GACCGA 1 cut(s) 278
TasI AATT 4 cut(s) 217, 254, 349, 684
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 2 cut(s) 623, 896
Tru9I TTAA 2 cut(s) 623, 896
TscAI CASTG 2 cut(s) 577, 696
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 4 cut(s) 172, 380, 473, 776
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 1 cut(s) 857
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 577, 696
VpaK11BI GGWCC 1 cut(s) 274
VspI ATTAAT 1 cut(s) 896
XapI RAATTY 1 cut(s) 349
XceI RCATGY 1 cut(s) 714
XhoI CTCGAG 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 748
XspI CTAG 2 cut(s) 146, 152
ZrmI AGTACT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.