FvH4_5g17100

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014142
Physical Location & Seq
Forward (+)
9751730 .. 9754052
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17100.t1

Sequence Viewer

Length: 870 bp
ATGGACAAGGTGGAGCAGGAGGTGGAGAAGGTGAAGAAGGAGTGGGACGACACCTACAACAATGTCGTAGAGCAAATCAAGGCGATCGAGAACTACGGTAAGTCGGAGACTCAAAACAAGGACTCTCTGCCCAGATTGAAGGGGCTCGCACAAGACGGCTTGGCGTTGCTCAATTCTCTGCAGTTCAAGCTCGATCTGTTCGCTCCTCAATTGCCGACTGACGATCAGGTCCAATCCGCCAAGGCCTTGCTCGACTCCTGGAAAAACCGATCCCACAGTTTGAGGTTGAGTATGAGGAATGCGAATTTACAAGCGAATGATAATATTAGGAAAGCTGCTCAGAAAGAGAGGGAACTTCTGTTGGGAGGTGGAGGAGAGTCCACAGCTCGCAGGCGAAACTTGCAGACAAAGGCTGGCATGACATCTGCTGTAGAAAGCATCACAGATAGCCTTAGGCGGACTCGTCAACTAATGGTTCAGGAGGTGGAAAGAAGCGCTGGCACACTCATGACTTTTGAGGAATCTACTGGAGTACTGAGGAAGGCTGAGACTGAATACAAAGGACACCGTAGTCTGTTAATGCGTACCAGAAACCTACTATCCACAATGCAACGCCAAGATGTCATTGACAGGGTGATCATTGCAGTTGGAGTTTTCCTGTTTACATGTGCTGTTCTTTATGTTGTTTCGAAGCGCATTGGTATACTGTATTTACAGAGGAAGGTCACAGCTGCTTTCAAGGCCGGTATGGTTGGTAAAGAGCTCCGGCCTGGAGCTGTTGGCAACGGTGTAAATCATGCCCCAGTCTATGACAATGCACTTCGTAAAGCCGAGGAACCTTTGGAGAGATTAATGCACGATGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

290

Amino Acids

32.54

Weight (kDa)

9.47

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec20 PF03908 144 - 233 1.5e-27 Sec20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 227, 570
AccI GTMKAC 1 cut(s) 703
AciI CCGC 2 cut(s) 237, 457
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 304
AfaI GTAC 2 cut(s) 534, 586
AfeI AGCGCT 1 cut(s) 496
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 139, 187, 739
AjnI CCWGG 2 cut(s) 257, 769
AluBI AGCT 6 cut(s) 190, 335, 386, 731, 763, 776
AluI AGCT 6 cut(s) 190, 335, 386, 731, 763, 776
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 2 cut(s) 101, 542
AlwI GGATC 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 496
AoxI GGCC 3 cut(s) 243, 741, 767
ApeKI GCWGC 2 cut(s) 335, 731
ApoI RAATTY 1 cut(s) 304
AseI ATTAAT 1 cut(s) 851
AspLEI GCGC 2 cut(s) 497, 696
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 43, 646
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 452
BanII GRGCYC 2 cut(s) 147, 765
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 322, 718
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 259, 771
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 101, 542
BfmI CTRYAG 2 cut(s) 179, 429
BfoI RGCGCY 1 cut(s) 498
BisI GCNGC 2 cut(s) 336, 732
BlsI GCNGC 2 cut(s) 337, 733
BmcAI AGTACT 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 259, 771
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 837
BmrFI CCNGG 2 cut(s) 259, 771
BmrI ACTGGG 1 cut(s) 797
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 797
BpmI CTGGAG 2 cut(s) 549, 792
Bpu14I TTCGAA 1 cut(s) 689
BsaJI CCNNGG 2 cut(s) 240, 831
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 2 cut(s) 532, 803
Bse21I CCTNAGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 2 cut(s) 259, 771
BseDI CCNNGG 2 cut(s) 240, 831
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 3 cut(s) 353, 527, 537
BseNI ACTGG 2 cut(s) 532, 803
BseRI GAGGAG 2 cut(s) 195, 387
BseXI GCAGC 2 cut(s) 322, 718
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 3 cut(s) 245, 743, 769
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 2 cut(s) 744, 766
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 101, 542
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 3 cut(s) 245, 743, 769
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 147, 765
Bsp143I GATC 5 cut(s) 84, 193, 223, 269, 636
BspACI CCGC 2 cut(s) 237, 457
BspANI GGCC 3 cut(s) 245, 743, 769
BspCNI CTCAG 3 cut(s) 352, 528, 538
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 1 cut(s) 837
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 264
BspT104I TTCGAA 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 2 cut(s) 532, 803
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 240, 831
BssMI GATC 5 cut(s) 84, 193, 223, 269, 636
BssNAI GTATAC 1 cut(s) 704
BssT1I CCWWGG 1 cut(s) 240
Bst1107I GTATAC 1 cut(s) 704
Bst2UI CCWGG 2 cut(s) 259, 771
Bst4CI ACNGT 5 cut(s) 98, 278, 569, 708, 788
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 5 cut(s) 147, 388, 392, 415, 499
BstDEI CTNAG 4 cut(s) 339, 452, 536, 546
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 2 cut(s) 497, 696
BstKTI GATC 5 cut(s) 87, 196, 226, 272, 639
BstMAI GTCTC 2 cut(s) 101, 542
BstMBI GATC 5 cut(s) 84, 193, 223, 269, 636
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 3 cut(s) 187, 400, 740
BstNI CCWGG 2 cut(s) 259, 771
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 2 cut(s) 257, 769
BstSFI CTRYAG 2 cut(s) 179, 429
BstV1I GCAGC 2 cut(s) 322, 718
BstZ17I GTATAC 1 cut(s) 704
Bsu36I CCTNAGG 1 cut(s) 452
BsuRI GGCC 3 cut(s) 245, 743, 769
Cac8I GCNNGC 5 cut(s) 147, 388, 392, 415, 499
CciI TCATGA 1 cut(s) 507
CfoI GCGC 2 cut(s) 497, 696
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 533, 585
CviAII CATG 4 cut(s) 418, 508, 666, 797
CviQI GTAC 2 cut(s) 533, 585
DdeI CTNAG 4 cut(s) 339, 452, 536, 546
DpnI GATC 5 cut(s) 86, 195, 225, 271, 638
DpnII GATC 5 cut(s) 84, 193, 223, 269, 636
DrdI GACNNNNNNGTC 2 cut(s) 227, 570
DseDI GACNNNNNNGTC 2 cut(s) 227, 570
EciI GGCGGA 2 cut(s) 226, 472
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 240
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 147, 765
Eco47I GGWCC 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 763
Eco81I CCTNAGG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 257, 769
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 2 cut(s) 147, 765
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 421, 511, 669, 800
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 417, 507, 665, 796
FbaI TGATCA 1 cut(s) 636
FblI GTMKAC 1 cut(s) 703
Fnu4HI GCNGC 2 cut(s) 336, 732
FriOI GRGCYC 2 cut(s) 147, 765
Fsp4HI GCNGC 2 cut(s) 336, 732
GlaI GCGC 2 cut(s) 496, 695
GluI GCNGC 2 cut(s) 336, 732
GsuI CTGGAG 2 cut(s) 549, 792
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 3 cut(s) 245, 743, 769
HapII CCGG 2 cut(s) 744, 766
HhaI GCGC 2 cut(s) 497, 696
Hin1II CATG 4 cut(s) 421, 511, 669, 800
Hin6I GCGC 2 cut(s) 495, 694
HinP1I GCGC 2 cut(s) 495, 694
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HinfI GANTC 6 cut(s) 109, 122, 254, 377, 460, 521
HpaII CCGG 2 cut(s) 744, 766
HphI GGTGA 2 cut(s) 43, 646
Hpy166II GTNNAC 4 cut(s) 381, 467, 663, 704
Hpy188I TCNGA 2 cut(s) 106, 342
Hpy188III TCNNGA 3 cut(s) 88, 479, 508
Hpy8I GTNNAC 4 cut(s) 381, 467, 663, 704
HpyAV CCTTC 5 cut(s) 22, 31, 133, 535, 715
HpyCH4III ACNGT 5 cut(s) 98, 278, 569, 708, 788
HpyCH4V TGCA 6 cut(s) 181, 403, 610, 644, 818, 856
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 400, 740
HpyF3I CTNAG 4 cut(s) 339, 452, 536, 546
Hsp92II CATG 4 cut(s) 421, 511, 669, 800
HspAI GCGC 2 cut(s) 495, 694
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 5 cut(s) 84, 193, 223, 269, 636
LmnI GCTCC 4 cut(s) 13, 208, 768, 773
Lsp1109I GCAGC 2 cut(s) 322, 718
LweI GCATC 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 724
MalI GATC 5 cut(s) 86, 195, 225, 271, 638
MboI GATC 5 cut(s) 84, 193, 223, 269, 636
MboII GAAGA 1 cut(s) 46
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 147, 765
MluCI AATT 3 cut(s) 172, 209, 304
MlyI GAGTC 5 cut(s) 103, 116, 248, 386, 454
MmeI TCCRAC 2 cut(s) 84, 628
MseI TTAA 2 cut(s) 578, 851
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 2 cut(s) 744, 766
MspR9I CCNGG 2 cut(s) 259, 771
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 259, 771
MwoI GCNNNNNNNGC 3 cut(s) 187, 400, 740
NdeII GATC 5 cut(s) 84, 193, 223, 269, 636
NlaIII CATG 4 cut(s) 421, 511, 669, 800
NlaIV GGNNCC 1 cut(s) 837
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 724
NspI RCATGY 1 cut(s) 669
NspV TTCGAA 1 cut(s) 689
PagI TCATGA 1 cut(s) 507
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 1 cut(s) 665
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 257
PkrI GCNGC 2 cut(s) 337, 733
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 5 cut(s) 103, 116, 248, 385, 454
PpsI GAGTC 5 cut(s) 103, 116, 248, 385, 454
PscI ACATGT 1 cut(s) 665
PshBI ATTAAT 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 257, 769
PspGI CCWGG 2 cut(s) 257, 769
PspN4I GGNNCC 1 cut(s) 837
PspPI GGNCC 1 cut(s) 229
PstI CTGCAG 1 cut(s) 183
PvuI CGATCG 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 2 cut(s) 534, 586
RsaNI GTAC 2 cut(s) 533, 585
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 2 cut(s) 578, 851
SatI GCNGC 2 cut(s) 336, 732
Sau3AI GATC 5 cut(s) 84, 193, 223, 269, 636
Sau96I GGNCC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 5 cut(s) 103, 116, 248, 386, 454
ScrFI CCNGG 2 cut(s) 259, 771
SduI GDGCHC 2 cut(s) 147, 765
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 2 cut(s) 179, 429
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 506
Sse9I AATT 3 cut(s) 172, 209, 304
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 2 cut(s) 237, 457
SspI AATATT 1 cut(s) 325
SstI GAGCTC 1 cut(s) 765
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 257, 769
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 5 cut(s) 98, 278, 569, 708, 788
TaqI TCGA 4 cut(s) 87, 192, 252, 689
TasI AATT 3 cut(s) 172, 209, 304
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 578, 851
Tru9I TTAA 2 cut(s) 578, 851
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 2 cut(s) 335, 731
Tsp45I GTSAC 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 229
VspI ATTAAT 1 cut(s) 851
XapI RAATTY 1 cut(s) 304
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 703
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.