Rorug06G0418800

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014142
Physical Location & Seq
Reverse (-)
55770234 .. 55773721
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0418800.1

Sequence Viewer

Length: 1332 bp
ATGAGTATGGCGAGGCCGGTGCCTGAGAATCCTTCAGAGCAGGGAATTGCGAAAGCTTCGACAAGCATGTGCATTCCACAGGAGGCTCAGTGTCCTGTGAGAAAGTGGTATTTTACGAAACAGGAAATCGAAGACTCTCCGTCCCGGAGGGATGGCATTAGCACGAAGAAAGAGTCGCACTTGCGGAGTTTATACTGCTCGTTTCTTCAGGACATTGGGATGAAGCTTAAAGTGCCTCAGCTGACAATATCATCTGCAATGATGTTGTGCCACCAGTTTTATATGCGTCAATCTCACGCTAAGAATGGTTGGCAGACGGTGGCAACTGCGAGCATCTTTCTCGCATGCAAAGCAGAAGATACACCACGCTATCTGAATGATGTTGTTGTGGTGGCATATGAGATGGTGCACAAATTTGATTCATCTGCCTTGCACCGAATCAGACAAAAAGAATTTCTCAATAAGCAAAAGGAATTGATCCTAGTTGCGGAGAGACTTCTGCTGTCAACAATTGGCTTTGATCTGGACATTCAGCTTCCATACAAGATACTTGTTGCTGCTCTAAAGAGATTAGATCTTCTCCCTGACCTTGCTAAGGCAGCATGGAGTTTTGTGAATGATTGGCTTCGCACATCATTGTGCTTGCAGTACAAGCCCCATTACATTGCAGCTGGTTCAGTCGCTCTTGCTGCTAATTTTCAAAAGGTGAAACTACCTAAAGAGAAGGGAAAAGTTTGGTGGCTGGAGTTTGATGTTACGCCGAAACAGTTAGATGAGGTCATTCAGCGGATGCATAGTATGTTCAAGCCTCTACCAGCTAAAACTGGGAAGGCCGTTCAACCTGAAATTTTATCCAGAAAGCCAATTGATAGTAGCCCTCAATCATGTATTTCAAGTGAAGCAATGGTAGACCAGCATTCTAGGCATGGTGCCACTGTGGATGATAGAGGATTAGGAGGAGAGTCTGTTATGTCTACATGTAGGCAAAATCTTGGAGGTGAGAACAATCTTACTGGGAAGGATGCTTTACCATGCCAGACGAATAATAGGAGTATTGTTAAGGATAGTGGTGGTGAGATCAAGCCAATAAGAGGGGAATTGGACGATCAGAGCACAAGATGCAAGATTCTCGATGTTCCTAAAAGCTGTGGTAAGATCGATATTAACCGTATTCGAGAATTGAAGAGGAGAAGATGTGATAAAGGTGTAAATAAGAAGTTGGCGGGCTCCATTACTGATGAGTTAGATCCTGAAGCCTGGATAGAAAGTGAGCTTGAAAACGGAGTAGAGCTGGAAGATGCATCTGCAGCAAAGAAACAAAGGAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

443

Amino Acids

49.78

Weight (kDa)

8.98

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 36 - 175 5.4e-15 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 929
AccI GTMKAC 2 cut(s) 909, 974
AciI CCGC 4 cut(s) 184, 488, 787, 1223
AclWI GGATC 2 cut(s) 472, 1241
AcsI RAATTY 3 cut(s) 413, 452, 846
AcuI CTGAAG 3 cut(s) 18, 191, 1272
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 3 cut(s) 487, 595, 1091
AflIII ACRYGT 1 cut(s) 977
AgsI TTSAA 6 cut(s) 701, 805, 839, 894, 1183, 1277
AhdI GACNNNNNGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 1256
AluBI AGCT 9 cut(s) 56, 226, 241, 535, 671, 818, 1146, 1273, 1291
AluI AGCT 9 cut(s) 56, 226, 241, 535, 671, 818, 1146, 1273, 1291
Alw21I GWGCWC 2 cut(s) 411, 1115
Alw26I GTCTC 1 cut(s) 487
Alw44I GTGCAC 1 cut(s) 407
AlwI GGATC 2 cut(s) 472, 1241
AoxI GGCC 2 cut(s) 14, 831
ApaLI GTGCAC 1 cut(s) 407
ApeKI GCWGC 5 cut(s) 557, 599, 668, 689, 1307
ApoI RAATTY 3 cut(s) 413, 452, 846
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 718, 1010, 1085
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 2 cut(s) 19, 929
BanII GRGCYC 1 cut(s) 1229
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 411, 1115
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 5 cut(s) 544, 611, 676, 680, 1319
BccI CCATC 2 cut(s) 146, 397
BceAI ACGGC 1 cut(s) 818
BcgI CGANNNNNNTGC 5 cut(s) 35, 322, 356, 1111, 1145
BciT130I CCWGG 1 cut(s) 1258
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 2 cut(s) 482, 921
BfmI CTRYAG 1 cut(s) 1305
BglII AGATCT 1 cut(s) 574
BisI GCNGC 5 cut(s) 558, 600, 669, 690, 1308
BlsI GCNGC 5 cut(s) 559, 601, 670, 691, 1309
Bme1390I CCNGG 2 cut(s) 145, 1258
BmeRI GACNNNNNGTC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 21, 931, 1228
BmrFI CCNGG 2 cut(s) 145, 1258
BmrI ACTGGG 2 cut(s) 834, 1023
BmsI GCATC 6 cut(s) 342, 780, 1012, 1109, 1288, 1310
BmuI ACTGGG 2 cut(s) 834, 1023
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 2 cut(s) 237, 594
BpuMI CCSGG 1 cut(s) 145
Bsa29I ATCGAT 1 cut(s) 1158
BsaXI ACNNNNNCTCC 6 cut(s) 74, 104, 951, 981, 1180, 1210
Bsc4I CCNNNNNNNGG 3 cut(s) 487, 595, 1091
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 3 cut(s) 274, 829, 1018
Bse3DI GCAATG 3 cut(s) 264, 663, 909
BseBI CCWGG 1 cut(s) 1258
BseCI ATCGAT 1 cut(s) 1158
BseGI GGATG 5 cut(s) 157, 225, 795, 946, 1027
BseLI CCNNNNNNNGG 3 cut(s) 487, 595, 1091
BseMI GCAATG 3 cut(s) 264, 663, 909
BseMII CTCAG 3 cut(s) 15, 101, 251
BseNI ACTGG 3 cut(s) 274, 829, 1018
BseRI GAGGAG 2 cut(s) 972, 1201
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 5 cut(s) 544, 611, 676, 680, 1319
BshFI GGCC 2 cut(s) 16, 833
BshNI GGYRCC 2 cut(s) 19, 929
BshVI ATCGAT 1 cut(s) 1158
BsiHKAI GWGCWC 2 cut(s) 411, 1115
BsiSI CCGG 2 cut(s) 17, 145
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 487, 595, 1091
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 2 cut(s) 72, 916
BsnI GGCC 2 cut(s) 16, 833
Bsp1286I GDGCHC 3 cut(s) 411, 1115, 1229
Bsp143I GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
BspACI CCGC 4 cut(s) 184, 488, 787, 1223
BspANI GGCC 2 cut(s) 16, 833
BspCNI CTCAG 3 cut(s) 16, 100, 250
BspDI ATCGAT 1 cut(s) 1158
BspLI GGNNCC 3 cut(s) 21, 931, 1228
BspMAI CTGCAG 1 cut(s) 1309
BspPI GGATC 2 cut(s) 472, 1241
BspT107I GGYRCC 2 cut(s) 19, 929
BsrDI GCAATG 3 cut(s) 264, 663, 909
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 3 cut(s) 274, 829, 1018
BssAI RCCGGY 1 cut(s) 16
BssMI GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
Bst2UI CCWGG 1 cut(s) 1258
Bst4CI ACNGT 4 cut(s) 319, 768, 937, 1169
Bst6I CTCTTC 1 cut(s) 1178
BstAPI GCANNNNNTGC 1 cut(s) 1119
BstC8I GCNNGC 4 cut(s) 331, 346, 644, 1225
BstDEI CTNAG 6 cut(s) 24, 87, 237, 300, 594, 1329
BstENI CCTNNNNNAGG 1 cut(s) 593
BstF5I GGATG 5 cut(s) 157, 225, 795, 946, 1027
BstKTI GATC 7 cut(s) 480, 523, 577, 1080, 1108, 1158, 1249
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
BstMWI GCNNNNNNNGC 8 cut(s) 232, 350, 599, 652, 689, 922, 1119, 1307
BstNI CCWGG 1 cut(s) 1258
BstNSI RCATGY 3 cut(s) 70, 348, 981
BstSCI CCNGG 2 cut(s) 143, 1256
BstSFI CTRYAG 1 cut(s) 1305
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 5 cut(s) 544, 611, 676, 680, 1319
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 574, 1246
BstYI RGATCY 2 cut(s) 574, 1246
Bsu15I ATCGAT 1 cut(s) 1158
BsuRI GGCC 2 cut(s) 16, 833
BsuTUI ATCGAT 1 cut(s) 1158
BtsCI GGATG 5 cut(s) 157, 225, 795, 946, 1027
BtsIMutI CAGTG 2 cut(s) 95, 933
Cac8I GCNNGC 4 cut(s) 331, 346, 644, 1225
Cfr10I RCCGGY 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 1158
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 649
CviAII CATG 7 cut(s) 67, 345, 603, 885, 926, 978, 1032
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 6 cut(s) 24, 87, 237, 300, 594, 1329
DpnI GATC 7 cut(s) 479, 522, 576, 1079, 1107, 1157, 1248
DpnII GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 1178
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 1178
Eco24I GRGCYC 1 cut(s) 1229
Eco57I CTGAAG 3 cut(s) 18, 191, 1272
EcoNI CCTNNNNNAGG 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 1256
EcoT22I ATGCAT 2 cut(s) 795, 1303
EcoT38I GRGCYC 1 cut(s) 1229
FaeI CATG 7 cut(s) 70, 348, 606, 888, 929, 981, 1035
FalI AAGNNNNNCTT 1 cut(s) 1312
FaqI GGGAC 1 cut(s) 127
FatI CATG 7 cut(s) 66, 344, 602, 884, 925, 977, 1031
FauI CCCGC 1 cut(s) 1216
FauNDI CATATG 1 cut(s) 397
FblI GTMKAC 2 cut(s) 909, 974
Fnu4HI GCNGC 5 cut(s) 558, 600, 669, 690, 1308
FokI GGATG 5 cut(s) 164, 232, 802, 953, 1034
FriOI GRGCYC 1 cut(s) 1229
Fsp4HI GCNGC 5 cut(s) 558, 600, 669, 690, 1308
FspBI CTAG 2 cut(s) 482, 921
GluI GCNGC 5 cut(s) 558, 600, 669, 690, 1308
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 2 cut(s) 16, 833
HapII CCGG 2 cut(s) 17, 145
HgaI GACGC 1 cut(s) 275
Hin1II CATG 7 cut(s) 70, 348, 606, 888, 929, 981, 1035
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 2 cut(s) 54, 224
HinfI GANTC 7 cut(s) 28, 134, 173, 419, 438, 962, 1126
HpaII CCGG 2 cut(s) 17, 145
HphI GGTGA 3 cut(s) 718, 1010, 1085
Hpy166II GTNNAC 4 cut(s) 409, 507, 910, 975
Hpy188I TCNGA 4 cut(s) 37, 375, 443, 1110
Hpy188III TCNNGA 6 cut(s) 209, 524, 855, 1130, 1175, 1250
Hpy8I GTNNAC 4 cut(s) 409, 507, 910, 975
HpyAV CCTTC 5 cut(s) 42, 718, 823, 1012, 1318
HpyCH4III ACNGT 4 cut(s) 319, 768, 937, 1169
HpyF10VI GCNNNNNNNGC 8 cut(s) 232, 350, 599, 652, 689, 922, 1119, 1307
HpyF3I CTNAG 6 cut(s) 24, 87, 237, 300, 594, 1329
Hsp92II CATG 7 cut(s) 70, 348, 606, 888, 929, 981, 1035
Kzo9I GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
LmnI GCTCC 1 cut(s) 1232
Lsp1109I GCAGC 5 cut(s) 544, 611, 676, 680, 1319
LweI GCATC 6 cut(s) 342, 780, 1012, 1109, 1288, 1310
MaeI CTAG 2 cut(s) 482, 921
MaeIII GTNAC 1 cut(s) 754
MalI GATC 7 cut(s) 479, 522, 576, 1079, 1107, 1157, 1248
MboI GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
MboII GAAGA 8 cut(s) 143, 178, 197, 368, 569, 1195, 1203, 1307
MfeI CAATTG 2 cut(s) 510, 864
MflI RGATCY 2 cut(s) 574, 1246
MhlI GDGCHC 3 cut(s) 411, 1115, 1229
MlyI GAGTC 3 cut(s) 128, 182, 971
Mph1103I ATGCAT 2 cut(s) 795, 1303
MseI TTAA 3 cut(s) 228, 1059, 1164
MslI CAYNNNNRTG 2 cut(s) 218, 637
MspA1I CMGCKG 3 cut(s) 241, 671, 787
MspI CCGG 2 cut(s) 17, 145
MspR9I CCNGG 2 cut(s) 145, 1258
MunI CAATTG 2 cut(s) 510, 864
Mva1269I GAATGC 2 cut(s) 72, 916
MvaI CCWGG 1 cut(s) 1258
MwoI GCNNNNNNNGC 8 cut(s) 232, 350, 599, 652, 689, 922, 1119, 1307
NciI CCSGG 1 cut(s) 145
NdeI CATATG 1 cut(s) 397
NdeII GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
NlaIII CATG 7 cut(s) 70, 348, 606, 888, 929, 981, 1035
NlaIV GGNNCC 3 cut(s) 21, 931, 1228
NsiI ATGCAT 2 cut(s) 795, 1303
NspI RCATGY 3 cut(s) 70, 348, 981
PaeI GCATGC 1 cut(s) 348
PciI ACATGT 1 cut(s) 977
PctI GAATGC 2 cut(s) 72, 916
PfeI GAWTC 4 cut(s) 28, 419, 438, 1126
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 5 cut(s) 559, 601, 670, 691, 1309
PleI GAGTC 3 cut(s) 128, 181, 970
PpsI GAGTC 3 cut(s) 128, 181, 970
PscI ACATGT 1 cut(s) 977
Psp6I CCWGG 1 cut(s) 1256
PspGI CCWGG 1 cut(s) 1256
PspN4I GGNNCC 3 cut(s) 21, 931, 1228
PstI CTGCAG 1 cut(s) 1309
PsuI RGATCY 2 cut(s) 574, 1246
PvuII CAGCTG 2 cut(s) 241, 671
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
RseI CAYNNNNRTG 2 cut(s) 218, 637
SaqAI TTAA 3 cut(s) 228, 1059, 1164
SatI GCNGC 5 cut(s) 558, 600, 669, 690, 1308
Sau3AI GATC 7 cut(s) 477, 520, 574, 1077, 1105, 1155, 1246
SchI GAGTC 3 cut(s) 128, 182, 971
ScrFI CCNGG 2 cut(s) 145, 1258
SduI GDGCHC 3 cut(s) 411, 1115, 1229
SfaNI GCATC 6 cut(s) 342, 780, 1012, 1109, 1288, 1310
SfcI CTRYAG 1 cut(s) 1305
SmiMI CAYNNNNRTG 2 cut(s) 218, 637
SphI GCATGC 1 cut(s) 348
SsiI CCGC 4 cut(s) 184, 488, 787, 1223
SspMI CTAG 2 cut(s) 482, 921
StyD4I CCNGG 2 cut(s) 143, 1256
TaaI ACNGT 4 cut(s) 319, 768, 937, 1169
TaqI TCGA 5 cut(s) 59, 129, 1131, 1158, 1174
TatI WGTACW 1 cut(s) 648
TfiI GAWTC 4 cut(s) 28, 419, 438, 1126
Tru1I TTAA 3 cut(s) 228, 1059, 1164
Tru9I TTAA 3 cut(s) 228, 1059, 1164
TscAI CASTG 2 cut(s) 95, 940
TseI GCWGC 5 cut(s) 557, 599, 668, 689, 1307
TspDTI ATGAA 2 cut(s) 236, 411
TspGWI ACGGA 2 cut(s) 129, 1296
TspRI CASTG 2 cut(s) 95, 940
VneI GTGCAC 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 593
XapI RAATTY 3 cut(s) 413, 452, 846
XceI RCATGY 3 cut(s) 70, 348, 981
XmiI GTMKAC 2 cut(s) 909, 974
XspI CTAG 2 cut(s) 482, 921
Zsp2I ATGCAT 2 cut(s) 795, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.