Rh7AG018200

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014142
Physical Location & Seq
Reverse (-)
1208129 .. 1212916
4788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG018200.1

Sequence Viewer

Length: 726 bp
ATGGACAAGGTGGAGCAGGAGGTGGAGAAGGTGAAGAAGGAGTGGGACGACACCTACAACAATGTCGTAGATCAAATCAAAGCCATCGAGAACTACGGCAAGTCGCCTTCTTCTTCTACTACCGGTGCGGAGCTAGAGCCGAAGAAGGACTCGCTGCCCAGATTGAAGGGCCTCGCGCAAGACGGCTTGTCGTTGCTCAATTCTCTGCAGTTCAAGCTCGATCTGTTCGCTCCCCAATTGCCGACCGACGATCAGGTCCAGTCCGCCAAGGCCTTGCTCGAGTCCTGGAAAAATCGATCCCAGAGTTTGAGGTTGAGTTTGAGGAATGCGAATTTGCAAGCGAATGAGAATATTAGGAAAGCTGCTCAAAAAGAGAGGGAACTTCTATTGGGAGGTGGAGGAGAGTCCACAACTCGCAGGCGAAACTTGCAGACAAAGGCTGGCATGACATCTGCCGCAGAAAGCATCACAGAGAGCCTTAGGCGGACTCGTCAACTAATGGTTCAGGAGGTGGAAAGGAGCGCAGGCACACTCCAGACTTTCGAGGAATCTACTGGAGTACTGAAGAAGGCTGAGACTGAATACAAAGGACACCGGAGTTTGTTAATGCGCACCAGAAACCTACTATCCACAATGCAACGCCAAGATATCATTGACAGGTTTGGAAGAGAAAATTTTTGCTTTATCCAATATTATCTTTATATACAGATTCTAATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

241

Amino Acids

27.48

Weight (kDa)

9.21

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec20 PF03908 151 - 221 6.6e-20 Sec20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
Acc16I TGCGCA 1 cut(s) 611
AccII CGCG 1 cut(s) 176
AciI CCGC 4 cut(s) 128, 264, 456, 484
AclWI GGATC 1 cut(s) 291
AcsI RAATTY 2 cut(s) 331, 673
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 1 cut(s) 561
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 2 cut(s) 166, 214
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 133, 217, 362
AluI AGCT 3 cut(s) 133, 217, 362
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 169, 270
ApeKI GCWGC 2 cut(s) 154, 362
ApoI RAATTY 2 cut(s) 331, 673
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 3 cut(s) 178, 524, 612
AspS9I GGNCC 2 cut(s) 169, 256
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 479
BbvI GCAGC 2 cut(s) 141, 349
BccI CCATC 1 cut(s) 92
BceAI ACGGC 2 cut(s) 112, 199
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 206
BisI GCNGC 3 cut(s) 155, 363, 456
BlsI GCNGC 3 cut(s) 156, 364, 457
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 169, 256
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 518, 576
Bsa29I ATCGAT 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 122, 594
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 259, 559
Bse21I CCTNAGG 1 cut(s) 479
BseBI CCWGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 259, 559
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 141, 349
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 171, 272
BshTI ACCGGT 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 123, 595
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 2 cut(s) 171, 272
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 4 cut(s) 70, 220, 250, 296
BspACI CCGC 4 cut(s) 128, 264, 456, 484
BspANI GGCC 2 cut(s) 171, 272
BspCNI CTCAG 1 cut(s) 565
BspDI ATCGAT 1 cut(s) 295
BspFNI CGCG 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 210
BspPI GGATC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 259, 559
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 4 cut(s) 70, 220, 250, 296
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 661
BstC8I GCNNGC 4 cut(s) 339, 419, 442, 526
BstDEI CTNAG 2 cut(s) 479, 573
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 3 cut(s) 178, 524, 612
BstKTI GATC 4 cut(s) 73, 223, 253, 299
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 4 cut(s) 70, 220, 250, 296
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 214, 427
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 206
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 141, 349
Bsu15I ATCGAT 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 479
BsuRI GGCC 2 cut(s) 171, 272
BsuTUI ATCGAT 1 cut(s) 295
Cac8I GCNNGC 4 cut(s) 339, 419, 442, 526
CfoI GCGC 3 cut(s) 178, 524, 612
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 169, 256
ClaI ATCGAT 1 cut(s) 295
Csp6I GTAC 1 cut(s) 560
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 1 cut(s) 445
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 2 cut(s) 479, 573
DpnI GATC 4 cut(s) 72, 222, 252, 298
DpnII GATC 4 cut(s) 70, 220, 250, 296
DrdI GACNNNNNNGTC 1 cut(s) 254
DriI GACNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 661
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 661
EciI GGCGGA 2 cut(s) 253, 499
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 272
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 284
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 448
FaiI YATR 3 cut(s) 446, 702, 704
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 155, 363, 456
Fsp4HI GCNGC 3 cut(s) 155, 363, 456
FspAI RTGCGCAY 1 cut(s) 611
FspBI CTAG 1 cut(s) 134
FspI TGCGCA 1 cut(s) 611
GlaI GCGC 3 cut(s) 177, 523, 611
GluI GCNGC 3 cut(s) 155, 363, 456
GsuI CTGGAG 2 cut(s) 518, 576
HaeIII GGCC 2 cut(s) 171, 272
HapII CCGG 2 cut(s) 123, 595
HhaI GCGC 3 cut(s) 178, 524, 612
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 3 cut(s) 176, 522, 610
HinP1I GCGC 3 cut(s) 176, 522, 610
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 6 cut(s) 149, 281, 404, 487, 548, 709
HpaII CCGG 2 cut(s) 123, 595
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 408, 494
Hpy188III TCNNGA 3 cut(s) 88, 506, 535
Hpy8I GTNNAC 2 cut(s) 408, 494
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 6 cut(s) 22, 31, 117, 139, 160, 562
HpyCH4V TGCA 4 cut(s) 208, 337, 430, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 427
HpyF3I CTNAG 2 cut(s) 479, 573
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 3 cut(s) 176, 522, 610
Kzo9I GATC 4 cut(s) 70, 220, 250, 296
LmnI GCTCC 4 cut(s) 13, 130, 235, 519
Lsp1109I GCAGC 2 cut(s) 141, 349
LweI GCATC 1 cut(s) 474
MaeI CTAG 1 cut(s) 134
MalI GATC 4 cut(s) 72, 222, 252, 298
MboI GATC 4 cut(s) 70, 220, 250, 296
MboII GAAGA 6 cut(s) 46, 102, 105, 154, 577, 678
MfeI CAATTG 1 cut(s) 236
MluCI AATT 4 cut(s) 199, 236, 331, 673
MlyI GAGTC 4 cut(s) 143, 290, 413, 481
MnlI CCTC 9 cut(s) 13, 182, 303, 315, 369, 386, 392, 502, 538
MseI TTAA 2 cut(s) 605, 724
MspI CCGG 2 cut(s) 123, 595
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 214, 427
NdeII GATC 4 cut(s) 70, 220, 250, 296
NlaIII CATG 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 278
PceI AGGCCT 1 cut(s) 272
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 548, 709
PfoI TCCNGGA 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 3 cut(s) 156, 364, 457
PleI GAGTC 4 cut(s) 143, 289, 412, 481
PpsI GAGTC 4 cut(s) 143, 289, 412, 481
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 2 cut(s) 169, 256
PspXI VCTCGAGB 1 cut(s) 278
PstI CTGCAG 1 cut(s) 210
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 605, 724
SatI GCNGC 3 cut(s) 155, 363, 456
Sau3AI GATC 4 cut(s) 70, 220, 250, 296
Sau96I GGNCC 2 cut(s) 169, 256
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 4 cut(s) 143, 290, 413, 481
ScrFI CCNGG 1 cut(s) 286
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 206
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 4 cut(s) 199, 236, 331, 673
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 4 cut(s) 128, 264, 456, 484
SspI AATATT 2 cut(s) 352, 692
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 267
TaqI TCGA 5 cut(s) 87, 219, 279, 295, 543
TaqII GACCGA 1 cut(s) 260
TasI AATT 4 cut(s) 199, 236, 331, 673
TatI WGTACW 1 cut(s) 559
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 2 cut(s) 548, 709
Tru1I TTAA 2 cut(s) 605, 724
Tru9I TTAA 2 cut(s) 605, 724
TseI GCWGC 2 cut(s) 154, 362
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 2 cut(s) 331, 673
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.