Rh7CG018400

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014142
Physical Location & Seq
Reverse (-)
1374470 .. 1377230
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG018400.1

Sequence Viewer

Length: 729 bp
ATGGACAAGGTGGAGCAGGAGGTGGAGAAGGTGAAGAAGGAGTGGGACGACACCTACAACAATGTCGTAGATCAAATCAAAGCCATCGAGAACTACGGCAAGTCACCTTCTTCTTCTTCTACTTCCACTACGGAGCTAGAGCCGAAGAAGGACTCGCTGCCCAGATTGAAGGGCCTCGCGCAAGACGGCTTGTCGTTGCTCAATTCTCTGCAGTTCAAGCTCGATCTGTTCGCTCCTCAATTGCCGACCGACGATCAGGTCCAGTCCGCCAAGGCCTTGCTCGAGTCCTGGAAAAATCGATCCCAGAGTTTGAGGTTGAGTTTGAGGAATGCGAATTTGCAAGCGAATGAGAATATTAGGAAAGCTGCTCAGAAAGAGAGGGAACTTCTATTAGGAGGTGGAGGAGAGTCCACAACTCGCAGGCGAAACTTGCAGACAAAGGCTGGCATGACATCTGCCGCAGAAAGCATCACAGAGAGCCTTAGGCGGAGTCGTCAACTAATGGTTCAGGAGGTGGAAAGGAGCGCAGGCACACTCCAGACTTTCGAGGAATCTACTGGAGTACTGAAGAAGGCTGAGACTGAATACAAAGGACACCGGAGTTTGTTAATGCGCACCAGAAACCTACTATCCACAATGCAACGCCAAGATATCATTGACAGGTTTGGAAGAGAAAATTTTTGCTTTATCCAATATTATCTTTATATACAGATTCTAATGTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

242

Amino Acids

27.61

Weight (kDa)

9.21

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec20 PF03908 152 - 222 2.7e-20 Sec20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc16I TGCGCA 1 cut(s) 614
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 267, 459, 487
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 2 cut(s) 334, 676
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 1 cut(s) 564
AgsI TTSAA 2 cut(s) 169, 217
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 3 cut(s) 136, 220, 365
AluI AGCT 3 cut(s) 136, 220, 365
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 172, 273
ApeKI GCWGC 2 cut(s) 157, 365
ApoI RAATTY 2 cut(s) 334, 676
AspLEI GCGC 3 cut(s) 181, 527, 615
AspS9I GGNCC 2 cut(s) 172, 259
AsuHPI GGTGA 2 cut(s) 43, 96
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 482
BbvI GCAGC 2 cut(s) 144, 352
BccI CCATC 1 cut(s) 92
BceAI ACGGC 2 cut(s) 112, 202
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 209
BisI GCNGC 3 cut(s) 158, 366, 459
BlsI GCNGC 3 cut(s) 159, 367, 460
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 259
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 172, 259
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 477
BpmI CTGGAG 2 cut(s) 521, 579
Bsa29I ATCGAT 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 597
Bse1I ACTGG 2 cut(s) 262, 562
Bse21I CCTNAGG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 289
BseCI ATCGAT 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 383, 567
BseNI ACTGG 2 cut(s) 262, 562
BseRI GAGGAG 2 cut(s) 225, 417
BseXI GCAGC 2 cut(s) 144, 352
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 174, 275
BshVI ATCGAT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 174, 275
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 4 cut(s) 70, 223, 253, 299
BspACI CCGC 3 cut(s) 267, 459, 487
BspANI GGCC 2 cut(s) 174, 275
BspCNI CTCAG 2 cut(s) 382, 568
BspDI ATCGAT 1 cut(s) 298
BspFNI CGCG 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 213
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 2 cut(s) 262, 562
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 4 cut(s) 70, 223, 253, 299
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 664
BstC8I GCNNGC 4 cut(s) 342, 422, 445, 529
BstDEI CTNAG 3 cut(s) 369, 482, 576
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 3 cut(s) 181, 527, 615
BstKTI GATC 4 cut(s) 73, 226, 256, 302
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 4 cut(s) 70, 223, 253, 299
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 217, 430
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 144, 352
Bsu15I ATCGAT 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 2 cut(s) 174, 275
BsuTUI ATCGAT 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 342, 422, 445, 529
CfoI GCGC 3 cut(s) 181, 527, 615
Cfr13I GGNCC 2 cut(s) 172, 259
ClaI ATCGAT 1 cut(s) 298
Csp6I GTAC 1 cut(s) 563
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 3 cut(s) 369, 482, 576
DpnI GATC 4 cut(s) 72, 225, 255, 301
DpnII GATC 4 cut(s) 70, 223, 253, 299
DrdI GACNNNNNNGTC 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 664
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 664
EciI GGCGGA 2 cut(s) 256, 502
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 275
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 587
Eco81I CCTNAGG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 287
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 451
FaiI YATR 3 cut(s) 449, 705, 707
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 158, 366, 459
Fsp4HI GCNGC 3 cut(s) 158, 366, 459
FspAI RTGCGCAY 1 cut(s) 614
FspBI CTAG 1 cut(s) 137
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 3 cut(s) 180, 526, 614
GluI GCNGC 3 cut(s) 158, 366, 459
GsuI CTGGAG 2 cut(s) 521, 579
HaeIII GGCC 2 cut(s) 174, 275
HapII CCGG 1 cut(s) 598
HhaI GCGC 3 cut(s) 181, 527, 615
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 3 cut(s) 179, 525, 613
HinP1I GCGC 3 cut(s) 179, 525, 613
HincII GTYRAC 1 cut(s) 497
HindII GTYRAC 1 cut(s) 497
HinfI GANTC 6 cut(s) 152, 284, 407, 490, 551, 712
HpaII CCGG 1 cut(s) 598
HphI GGTGA 2 cut(s) 43, 96
Hpy166II GTNNAC 2 cut(s) 411, 497
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 3 cut(s) 88, 509, 538
Hpy8I GTNNAC 2 cut(s) 411, 497
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 6 cut(s) 22, 31, 117, 142, 163, 565
HpyCH4V TGCA 4 cut(s) 211, 340, 433, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 430
HpyF3I CTNAG 3 cut(s) 369, 482, 576
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 3 cut(s) 179, 525, 613
Kzo9I GATC 4 cut(s) 70, 223, 253, 299
LmnI GCTCC 4 cut(s) 13, 133, 238, 522
Lsp1109I GCAGC 2 cut(s) 144, 352
LweI GCATC 1 cut(s) 477
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 102
MalI GATC 4 cut(s) 72, 225, 255, 301
MboI GATC 4 cut(s) 70, 223, 253, 299
MboII GAAGA 7 cut(s) 46, 102, 105, 108, 157, 580, 681
MfeI CAATTG 1 cut(s) 239
MluCI AATT 4 cut(s) 202, 239, 334, 676
MlyI GAGTC 4 cut(s) 146, 293, 416, 499
MseI TTAA 2 cut(s) 608, 727
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 1 cut(s) 289
MunI CAATTG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 217, 430
NdeII GATC 4 cut(s) 70, 223, 253, 299
NlaIII CATG 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 102
NsbI TGCGCA 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 281
PceI AGGCCT 1 cut(s) 275
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 551, 712
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 3 cut(s) 159, 367, 460
PleI GAGTC 4 cut(s) 146, 292, 415, 498
PpsI GAGTC 4 cut(s) 146, 292, 415, 498
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 2 cut(s) 172, 259
PspXI VCTCGAGB 1 cut(s) 281
PstI CTGCAG 1 cut(s) 213
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 608, 727
SatI GCNGC 3 cut(s) 158, 366, 459
Sau3AI GATC 4 cut(s) 70, 223, 253, 299
Sau96I GGNCC 2 cut(s) 172, 259
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 4 cut(s) 146, 293, 416, 499
ScrFI CCNGG 1 cut(s) 289
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 209
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 202, 239, 334, 676
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 3 cut(s) 267, 459, 487
SspI AATATT 2 cut(s) 355, 695
SspMI CTAG 1 cut(s) 137
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 270
TaqI TCGA 5 cut(s) 87, 222, 282, 298, 546
TaqII GACCGA 1 cut(s) 263
TasI AATT 4 cut(s) 202, 239, 334, 676
TatI WGTACW 1 cut(s) 562
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 2 cut(s) 551, 712
Tru1I TTAA 2 cut(s) 608, 727
Tru9I TTAA 2 cut(s) 608, 727
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 2 cut(s) 157, 365
Tsp45I GTSAC 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 2 cut(s) 334, 676
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.