AT3G24330

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8830336 .. 8831838
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24330.1

Sequence Viewer

Length: 1503 bp
ATGGCAGGAGAGAGATCAAAGTTAACAACAAACCACTTTTATAATCATCAGATTATTCTTTGTTACTTTCTTATCATCTCACAAGTTTCCATTGCCTCAAGCAACACGAGTAATGTAGGAGTTAACTGGGGAATAATGGCGAGTCACCAGCTTCCACCAGAAAAGGTTGTGAAGATGCTAATGGACAATAGTTTCACTAAGCTGAAACTATTTGAAGCCGACCAAAACATCTTAGACGCTCTAATTGGCTCAGACATTGAAGTCATGATAGGAATACCAAACCGGTTTCTTAAAGAAATGGCTCAAGATACATCTGTAGCAGCTTCATGGGTTGAAGAAAACGTTACTGCTTATTCTTACAACGGTGGAGTCAACATCAAGTACATAGCTGTTGGAAACGAGCCTTTCCTTCAGACATATAATGGAACTTACGTTGAGTTCACATTACCAGCTCTTATCAACATCCAACGAGCACTAGAGGAAGCTGATCTGAAAAATGTGAAAGTCACTGTTCCTTTCAACGCAGACATCTATTTTTCCCCTGAAGCGAACCCTGTTCCATCAGCTGGAGACTTTAGACCTGAGCTAAGGGATGCAACGATTGAGATAATCAATTTCTTGTATTCACATGATTCGCCTTTCACGGTTAACATATACCCTTTTCTTAGTCTCTATGGAAATGCTTACTTTCCTTTGGATTTTGCCTTCTTTGATGGGACTAACAAGTCTTTGAGAGATGGAAATTTGGTCTACACCAATGTGTTTGATGCGAATCTCGACACTTTGATTTGTGCTATGGAGAGATATAGCTTCTTGGGGATGAAGATCATTGTAGGAGAGGTCGGGTGGCCTACGGATGGAGACAAGAACGCTAATGTAAAGAGTGCAAAGAGATTCAATCAGGGAATGGTAAAGCATGCTATGTCTGGAAATGGAACGCCTGCGAGGAAAGGAGTGATTATGGATGTTTACCTTTTCAGCCTTGTTGATGAGGACGCCAAGAGTATAGCACCGGGGACTTTTGAGAGGCACTGGGGGATCTTTGAGTTTGATGGGAGACCGAAATATGAGCTTGACTTGTCAGGTAAAGGAAATGACAAGCCTTTGGTTCCTGTGGAAGATGTGAAGTATCTGCCCAAAACTTGGTGTATTCTTGACCCTAATGCATATAACCTCGATGACTTGCCTGATAATATCGACTATGCTTGTAGTTTGTCTGATTGCACAGCACTCGGGTATGGATCCTCTTGTAACCATCTCACTGCTACAGGAAATGTTTCATATGCCTTTAATATGTATTATCAGATGCACGATCAGAAAACATGGGACTGCGATTTCTTGGGGTTGGGTTTGATCACAGATGAAGATCCATCTGATGAACTTTGCGAGTTCCCTGTAATGATTGATACAGGAGATTCAACGAGGTTGCAGCCTGGATCTTCAAGAGTGTTGACCAGAGTCGCAGCCGCGGTTTTAGTTATGTTGGTCCTTCCCATCTTGTAG

Protein Analysis

500

Amino Acids

55.66

Weight (kDa)

4.64

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 39 - 359 2e-65 Glycosyl hydrolases family 17
X8 PF07983 381 - 450 8.2e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AasI GACNNNNNNGTC 2 cut(s) 260, 724
AccB7I CCANNNNNTGG 2 cut(s) 566, 1143
AccI GTMKAC 1 cut(s) 750
AccII CGCG 1 cut(s) 1469
AciI CCGC 2 cut(s) 1467, 1469
AclI AACGTT 1 cut(s) 342
AclWI GGATC 5 cut(s) 1046, 1236, 1249, 1361, 1444
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 2 cut(s) 395, 564
AcyI GRCGYC 1 cut(s) 996
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 3 cut(s) 566, 857, 1143
AgeI ACCGGT 1 cut(s) 282
AgsI TTSAA 7 cut(s) 215, 260, 335, 520, 898, 1419, 1443
AjnI CCWGG 1 cut(s) 1432
AleI CACNNNNGTG 1 cut(s) 758
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 4 cut(s) 564, 674, 855, 1051
AlwI GGATC 5 cut(s) 1046, 1236, 1249, 1361, 1444
Ama87I CYCGRG 1 cut(s) 1232
AoxI GGCC 1 cut(s) 848
ApeKI GCWGC 3 cut(s) 320, 1429, 1463
ApoI RAATTY 1 cut(s) 742
AsiGI ACCGGT 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 1276
AspS9I GGNCC 1 cut(s) 1486
AsuC2I CCSGG 1 cut(s) 1014
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 1232
AvaII GGWCC 1 cut(s) 1486
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BamHI GGATCC 1 cut(s) 1241
BauI CACGAG 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 3 cut(s) 332, 1441, 1475
BccI CCATC 8 cut(s) 568, 707, 731, 851, 1046, 1263, 1378, 1502
BcgI CGANNNNNNTGC 2 cut(s) 1213, 1247
BciT130I CCWGG 1 cut(s) 1434
BclI TGATCA 1 cut(s) 1353
BcnI CCSGG 1 cut(s) 1014
BcoDI GTCTC 4 cut(s) 564, 674, 855, 1051
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 2 cut(s) 315, 1266
BisI GCNGC 4 cut(s) 321, 1430, 1464, 1467
BlsI GCNGC 4 cut(s) 322, 1431, 1465, 1468
Bme1390I CCNGG 2 cut(s) 1014, 1434
Bme18I GGWCC 1 cut(s) 1486
BmeT110I CYCGRG 1 cut(s) 1232
BmgT120I GGNCC 1 cut(s) 1486
BmiI GGNNCC 2 cut(s) 1110, 1243
BmrFI CCNGG 2 cut(s) 1014, 1434
BmrI ACTGGG 2 cut(s) 136, 1042
BmsI GCATC 4 cut(s) 165, 583, 757, 1296
BmuI ACTGGG 2 cut(s) 136, 1042
BoxI GACNNNNGTC 1 cut(s) 1457
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 2 cut(s) 582, 587
BpuEI CTTGAG 2 cut(s) 82, 288
BpuMI CCSGG 1 cut(s) 1014
BsaBI GATNNNNATC 3 cut(s) 771, 824, 1365
BsaHI GRCGYC 1 cut(s) 996
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 2 cut(s) 1013, 1467
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 3 cut(s) 566, 857, 1143
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 131, 1037
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 3 cut(s) 771, 824, 1365
BseBI CCWGG 1 cut(s) 1434
BseDI CCNNGG 2 cut(s) 1013, 1467
BseGI GGATG 5 cut(s) 462, 598, 825, 862, 970
BseJI GATNNNNATC 3 cut(s) 771, 824, 1365
BseLI CCNNNNNNNGG 3 cut(s) 566, 857, 1143
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 264, 573
BseNI ACTGG 2 cut(s) 131, 1037
BseXI GCAGC 3 cut(s) 332, 1441, 1475
Bsh1236I CGCG 1 cut(s) 1469
BshFI GGCC 1 cut(s) 850
BshTI ACCGGT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 1232
BsiSI CCGG 2 cut(s) 283, 1013
BslFI GGGAC 3 cut(s) 730, 1030, 1340
BslI CCNNNNNNNGG 3 cut(s) 566, 857, 1143
BsmAI GTCTC 4 cut(s) 564, 674, 855, 1051
BsmFI GGGAC 3 cut(s) 730, 1030, 1340
BsnI GGCC 1 cut(s) 850
Bso31I GGTCTC 1 cut(s) 1051
BsoBI CYCGRG 1 cut(s) 1232
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
BspACI CCGC 2 cut(s) 1467, 1469
BspANI GGCC 1 cut(s) 850
BspCNI CTCAG 2 cut(s) 263, 574
BspFNI CGCG 1 cut(s) 1469
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 1110, 1243
BspPI GGATC 5 cut(s) 1046, 1236, 1249, 1361, 1444
BspTNI GGTCTC 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 2 cut(s) 131, 1037
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 1013, 1467
BssMI GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
BssNI GRCGYC 1 cut(s) 996
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 1434
Bst4CI ACNGT 3 cut(s) 365, 511, 646
BstACI GRCGYC 1 cut(s) 996
BstC8I GCNNGC 2 cut(s) 918, 942
BstDEI CTNAG 6 cut(s) 198, 232, 250, 582, 587, 665
BstDSI CCRYGG 1 cut(s) 1467
BstF5I GGATG 5 cut(s) 462, 598, 825, 862, 970
BstFNI CGCG 1 cut(s) 1469
BstKTI GATC 9 cut(s) 17, 490, 828, 1041, 1244, 1315, 1356, 1369, 1439
BstMAI GTCTC 4 cut(s) 564, 674, 855, 1051
BstMBI GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
BstNI CCWGG 1 cut(s) 1434
BstNSI RCATGY 1 cut(s) 920
BstPAI GACNNNNGTC 1 cut(s) 1457
BstSCI CCNGG 2 cut(s) 1012, 1432
BstSFI CTRYAG 2 cut(s) 315, 1266
BstUI CGCG 1 cut(s) 1469
BstV1I GCAGC 3 cut(s) 332, 1441, 1475
BstX2I RGATCY 4 cut(s) 1038, 1241, 1366, 1436
BstYI RGATCY 4 cut(s) 1038, 1241, 1366, 1436
BsuRI GGCC 1 cut(s) 850
BtgI CCRYGG 1 cut(s) 1467
BtsCI GGATG 5 cut(s) 462, 598, 825, 862, 970
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 3 cut(s) 507, 1030, 1260
Cac8I GCNNGC 2 cut(s) 918, 942
CciI TCATGA 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 1486
Cfr42I CCGCGG 1 cut(s) 1470
CseI GACGC 2 cut(s) 245, 1004
Csp6I GTAC 1 cut(s) 382
CspAI ACCGGT 1 cut(s) 282
CviAII CATG 5 cut(s) 265, 327, 629, 917, 1323
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 6 cut(s) 198, 232, 250, 582, 587, 665
DpnI GATC 9 cut(s) 16, 489, 827, 1040, 1243, 1314, 1355, 1368, 1438
DpnII GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
DrdI GACNNNNNNGTC 2 cut(s) 260, 724
DseDI GACNNNNNNGTC 2 cut(s) 260, 724
Eco31I GGTCTC 1 cut(s) 1051
Eco47I GGWCC 1 cut(s) 1486
Eco57I CTGAAG 2 cut(s) 395, 564
Eco88I CYCGRG 1 cut(s) 1232
EcoRII CCWGG 1 cut(s) 1432
EcoT22I ATGCAT 1 cut(s) 1168
FaeI CATG 5 cut(s) 268, 330, 632, 920, 1326
FaqI GGGAC 3 cut(s) 730, 1030, 1340
FatI CATG 5 cut(s) 264, 326, 628, 916, 1322
FauNDI CATATG 1 cut(s) 1282
FbaI TGATCA 1 cut(s) 1353
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 4 cut(s) 321, 1430, 1464, 1467
FokI GGATG 5 cut(s) 449, 605, 832, 869, 977
Fsp4HI GCNGC 4 cut(s) 321, 1430, 1464, 1467
FspBI CTAG 1 cut(s) 476
GluI GCNGC 4 cut(s) 321, 1430, 1464, 1467
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 1 cut(s) 850
HapII CCGG 2 cut(s) 283, 1013
HgaI GACGC 2 cut(s) 245, 1004
Hin1I GRCGYC 1 cut(s) 996
Hin1II CATG 5 cut(s) 268, 330, 632, 920, 1326
HincII GTYRAC 5 cut(s) 24, 124, 373, 649, 1452
HindII GTYRAC 5 cut(s) 24, 124, 373, 649, 1452
HinfI GANTC 7 cut(s) 142, 369, 632, 772, 894, 1415, 1458
HpaI GTTAAC 3 cut(s) 24, 124, 649
HpaII CCGG 2 cut(s) 283, 1013
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 8 cut(s) 24, 124, 373, 441, 649, 751, 970, 1452
Hpy188I TCNGA 8 cut(s) 51, 253, 414, 492, 1219, 1305, 1317, 1375
Hpy188III TCNNGA 6 cut(s) 265, 305, 776, 927, 1154, 1443
Hpy8I GTNNAC 8 cut(s) 24, 124, 373, 441, 649, 751, 970, 1452
HpyAV CCTTC 3 cut(s) 419, 715, 1499
HpyCH4III ACNGT 3 cut(s) 365, 511, 646
HpyCH4IV ACGT 2 cut(s) 342, 432
HpyCH4V TGCA 6 cut(s) 596, 887, 1166, 1224, 1309, 1429
HpyF3I CTNAG 6 cut(s) 198, 232, 250, 582, 587, 665
HpySE526I ACGT 2 cut(s) 342, 432
Hsp92I GRCGYC 1 cut(s) 996
Hsp92II CATG 5 cut(s) 268, 330, 632, 920, 1326
Ksp22I TGATCA 1 cut(s) 1353
KspAI GTTAAC 3 cut(s) 24, 124, 649
KspI CCGCGG 1 cut(s) 1470
Kzo9I GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
Lsp1109I GCAGC 3 cut(s) 332, 1441, 1475
LweI GCATC 4 cut(s) 165, 583, 757, 1296
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 342, 432
MaeIII GTNAC 5 cut(s) 62, 143, 343, 505, 1250
MalI GATC 9 cut(s) 16, 489, 827, 1040, 1243, 1314, 1355, 1368, 1438
MboI GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
MboII GAAGA 6 cut(s) 184, 347, 835, 1130, 1376, 1431
MflI RGATCY 4 cut(s) 1038, 1241, 1366, 1436
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 3 cut(s) 243, 613, 742
MlyI GAGTC 3 cut(s) 151, 378, 1467
MmeI TCCRAC 2 cut(s) 373, 490
MnlI CCTC 9 cut(s) 106, 472, 832, 939, 985, 1020, 1184, 1255, 1416
Mph1103I ATGCAT 1 cut(s) 1168
MroXI GAANNNNTTC 1 cut(s) 1276
MseI TTAA 5 cut(s) 23, 123, 291, 648, 1290
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 2 cut(s) 566, 1469
MspI CCGG 2 cut(s) 283, 1013
MspR9I CCNGG 2 cut(s) 1014, 1434
MvaI CCWGG 1 cut(s) 1434
MvnI CGCG 1 cut(s) 1469
NciI CCSGG 1 cut(s) 1014
NdeI CATATG 1 cut(s) 1282
NdeII GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
NlaIII CATG 5 cut(s) 268, 330, 632, 920, 1326
NlaIV GGNNCC 2 cut(s) 1110, 1243
NmuCI GTSAC 2 cut(s) 143, 505
NsiI ATGCAT 1 cut(s) 1168
NspI RCATGY 1 cut(s) 920
OliI CACNNNNGTG 1 cut(s) 758
PaeI GCATGC 1 cut(s) 920
PagI TCATGA 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 1276
PfeI GAWTC 4 cut(s) 632, 772, 894, 1415
PflMI CCANNNNNTGG 2 cut(s) 566, 1143
PinAI ACCGGT 1 cut(s) 282
PkrI GCNGC 4 cut(s) 322, 1431, 1465, 1468
PleI GAGTC 3 cut(s) 150, 377, 1466
PpsI GAGTC 3 cut(s) 150, 377, 1466
PshAI GACNNNNGTC 1 cut(s) 1457
PsiI TTATAA 1 cut(s) 42
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 1432
PspGI CCWGG 1 cut(s) 1432
PspN4I GGNNCC 2 cut(s) 1110, 1243
PspPI GGNCC 1 cut(s) 1486
PsuI RGATCY 4 cut(s) 1038, 1241, 1366, 1436
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 758
SacII CCGCGG 1 cut(s) 1470
SaqAI TTAA 5 cut(s) 23, 123, 291, 648, 1290
SatI GCNGC 4 cut(s) 321, 1430, 1464, 1467
Sau3AI GATC 9 cut(s) 14, 487, 825, 1038, 1241, 1312, 1353, 1366, 1436
Sau96I GGNCC 1 cut(s) 1486
SchI GAGTC 3 cut(s) 151, 378, 1467
ScrFI CCNGG 2 cut(s) 1014, 1434
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 4 cut(s) 165, 583, 757, 1296
SfcI CTRYAG 2 cut(s) 315, 1266
Sfr303I CCGCGG 1 cut(s) 1470
SgrBI CCGCGG 1 cut(s) 1470
SinI GGWCC 1 cut(s) 1486
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 97, 303
SmoI CTYRAG 2 cut(s) 97, 303
SphI GCATGC 1 cut(s) 920
Sse9I AATT 3 cut(s) 243, 613, 742
SsiI CCGC 2 cut(s) 1467, 1469
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 1012, 1432
TaaI ACNGT 3 cut(s) 365, 511, 646
TaiI ACGT 2 cut(s) 345, 435
TaqI TCGA 3 cut(s) 777, 1176, 1197
TaqII GACCGA 1 cut(s) 1075
TasI AATT 3 cut(s) 243, 613, 742
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 1469
TfiI GAWTC 4 cut(s) 632, 772, 894, 1415
Tru1I TTAA 5 cut(s) 23, 123, 291, 648, 1290
Tru9I TTAA 5 cut(s) 23, 123, 291, 648, 1290
TscAI CASTG 3 cut(s) 514, 1037, 1267
TseFI GTSAC 2 cut(s) 143, 505
TseI GCWGC 3 cut(s) 320, 1429, 1463
Tsp45I GTSAC 2 cut(s) 143, 505
TspDTI ATGAA 5 cut(s) 315, 836, 1269, 1377, 1392
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 3 cut(s) 514, 1037, 1267
Van91I CCANNNNNTGG 2 cut(s) 566, 1143
VpaK11BI GGWCC 1 cut(s) 1486
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 1276
XspI CTAG 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.